EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000013936 (Gene tree)
Gene ID: 109992415
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 9677 bases
Position: chrFKLU01000231.1:644342-654018
Accession: 109992415
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000018192	PWI	PF01480.17	7.6e-31	1	1
ENSLBEP00000018154	PWI	PF01480.17	9.7e-31	1	1
ENSLBEP00000018116	PWI	PF01480.17	1e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000019166	-	3382	XM_020645000	ENSLBEP00000018154	832 (aa)	XP_020500656	UPI0009B42FDB
ENSLBET00000019207	-	2049	-	ENSLBEP00000018192	682 (aa)	-	-
ENSLBET00000019126	-	3469	XM_020644999	ENSLBEP00000018116	861 (aa)	XP_020500655	UPI0009B3019E

Gene Model

Click here to download ENSLBEG00000013936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000013936's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000013936	srrm1	100	87.861	ENSAPOG00000001170	srrm1	99	100.000	Acanthochromis_polyacanthus
ENSLBEG00000013936	srrm1	100	84.211	ENSAOCG00000021757	srrm1	72	90.311	Amphiprion_ocellaris
ENSLBEG00000013936	srrm1	100	87.254	ENSAPEG00000018964	srrm1	87	83.041	Amphiprion_percula
ENSLBEG00000013936	srrm1	75	73.077	ENSDARG00000001244	srrm1	99	96.154	Danio_rerio
ENSLBEG00000013936	srrm1	61	75.352	ENSGMOG00000019099	srrm1	70	78.746	Gadus_morhua
ENSLBEG00000013936	srrm1	60	81.853	ENSGACG00000007266	srrm1	81	96.407	Gasterosteus_aculeatus
ENSLBEG00000013936	srrm1	58	80.800	ENSHBUG00000020364	srrm1	63	77.200	Haplochromis_burtoni
ENSLBEG00000013936	srrm1	100	86.590	ENSMAMG00000010305	srrm1	58	82.365	Mastacembelus_armatus
ENSLBEG00000013936	srrm1	58	81.600	ENSONIG00000008206	srrm1	54	80.800	Oreochromis_niloticus
ENSLBEG00000013936	srrm1	61	75.000	ENSPKIG00000008252	srrm1	62	54.219	Paramormyrops_kingsleyae
ENSLBEG00000013936	srrm1	68	80.224	ENSPLAG00000006807	srrm1	99	100.000	Poecilia_latipinna
ENSLBEG00000013936	srrm1	68	80.224	ENSPLAG00000002058	srrm1	77	100.000	Poecilia_latipinna
ENSLBEG00000013936	srrm1	58	61.416	ENSPMEG00000002603	srrm1	96	66.137	Poecilia_mexicana
ENSLBEG00000013936	srrm1	100	89.827	ENSSDUG00000012967	srrm1	77	92.096	Seriola_dumerili
ENSLBEG00000013936	srrm1	72	87.298	ENSSLDG00000012771	srrm1	78	92.440	Seriola_lalandi_dorsalis
ENSLBEG00000013936	srrm1	58	85.170	ENSSPAG00000009507	srrm1	58	85.170	Stegastes_partitus
ENSLBEG00000013936	srrm1	100	63.597	ENSTRUG00000002519	srrm1	55	82.105	Takifugu_rubripes
ENSLBEG00000013936	srrm1	61	82.254	ENSTNIG00000016909	srrm1	57	81.053	Tetraodon_nigroviridis