EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000014675 (Gene tree)
Gene ID: 109988389
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 10980 bases
Position: chrFKLU01000138.1:1028325-1039304
Accession: 109988389
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000019128	RRM_1	PF00076.22	7.5e-07	1	1
ENSLBEP00000019098	RRM_1	PF00076.22	7.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000020160	-	6605	XM_020639860	ENSLBEP00000019128	1074 (aa)	XP_020495516	-
ENSLBET00000020129	-	6702	-	ENSLBEP00000019098	1067 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000014675's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000014675's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000014675	scaf4a	100	80.255	ENSAPOG00000002946	scaf4a	98	79.345	Acanthochromis_polyacanthus
ENSLBEG00000014675	scaf4a	56	56.349	ENSAPOG00000019615	scaf4b	69	56.452	Acanthochromis_polyacanthus
ENSLBEG00000014675	scaf4a	56	54.365	ENSAOCG00000010433	scaf4b	76	55.510	Amphiprion_ocellaris
ENSLBEG00000014675	scaf4a	100	81.603	ENSAOCG00000000615	scaf4a	98	78.506	Amphiprion_ocellaris
ENSLBEG00000014675	scaf4a	100	80.692	ENSAPEG00000021229	scaf4a	98	78.051	Amphiprion_percula
ENSLBEG00000014675	scaf4a	56	54.365	ENSAPEG00000010913	scaf4b	76	55.510	Amphiprion_percula
ENSLBEG00000014675	scaf4a	90	58.685	ENSACAG00000002569	SCAF4	75	49.637	Anolis_carolinensis
ENSLBEG00000014675	scaf4a	99	49.912	ENSAMXG00000008585	scaf4a	81	55.752	Astyanax_mexicanus
ENSLBEG00000014675	scaf4a	54	53.261	ENSCJAG00000008993	SCAF4	92	54.282	Callithrix_jacchus
ENSLBEG00000014675	scaf4a	54	56.094	ENSCAFG00020026019	SCAF4	81	52.528	Canis_lupus_dingo
ENSLBEG00000014675	scaf4a	100	70.625	ENSCSEG00000019549	scaf4a	98	69.080	Cynoglossus_semilaevis
ENSLBEG00000014675	scaf4a	83	55.638	ENSDARG00000077093	scaf4a	78	55.973	Danio_rerio
ENSLBEG00000014675	scaf4a	76	79.641	ENSELUG00000009909	scaf4a	79	78.173	Esox_lucius
ENSLBEG00000014675	scaf4a	99	73.930	ENSFHEG00000017866	scaf4a	91	74.633	Fundulus_heteroclitus
ENSLBEG00000014675	scaf4a	65	62.953	ENSGMOG00000015188	scaf4a	77	62.238	Gadus_morhua
ENSLBEG00000014675	scaf4a	65	79.243	ENSGAFG00000019460	scaf4a	84	75.694	Gambusia_affinis
ENSLBEG00000014675	scaf4a	72	76.818	ENSGACG00000020580	scaf4a	85	78.214	Gasterosteus_aculeatus
ENSLBEG00000014675	scaf4a	52	54.348	ENSGGOG00000015557	SCAF4	75	53.581	Gorilla_gorilla
ENSLBEG00000014675	scaf4a	100	74.912	ENSHBUG00000007920	scaf4a	99	71.928	Haplochromis_burtoni
ENSLBEG00000014675	scaf4a	84	51.852	ENSIPUG00000011285	scaf4	82	58.926	Ictalurus_punctatus
ENSLBEG00000014675	scaf4a	86	50.273	ENSLACG00000013913	SCAF4	85	48.859	Latimeria_chalumnae
ENSLBEG00000014675	scaf4a	58	43.219	ENSLOCG00000009162	scaf4a	83	56.725	Lepisosteus_oculatus
ENSLBEG00000014675	scaf4a	76	74.394	ENSMAMG00000013223	scaf4a	100	73.441	Mastacembelus_armatus
ENSLBEG00000014675	scaf4a	99	75.828	ENSMZEG00005024349	scaf4a	98	74.575	Maylandia_zebra
ENSLBEG00000014675	scaf4a	58	57.353	ENSMGAG00000014515	SCAF4	83	51.667	Meleagris_gallopavo
ENSLBEG00000014675	scaf4a	85	83.142	ENSMALG00000013825	scaf4a	94	82.759	Monopterus_albus
ENSLBEG00000014675	scaf4a	100	74.518	ENSONIG00000004687	scaf4a	98	72.329	Oreochromis_niloticus
ENSLBEG00000014675	scaf4a	100	65.976	ENSORLG00000004384	scaf4a	98	64.767	Oryzias_latipes
ENSLBEG00000014675	scaf4a	66	51.751	ENSORLG00000003420	scaf4b	69	51.737	Oryzias_latipes
ENSLBEG00000014675	scaf4a	66	52.140	ENSORLG00020013853	scaf4b	51	74.101	Oryzias_latipes_hni
ENSLBEG00000014675	scaf4a	100	65.889	ENSORLG00020011857	scaf4a	98	65.717	Oryzias_latipes_hni
ENSLBEG00000014675	scaf4a	100	68.087	ENSORLG00015017880	scaf4a	98	66.435	Oryzias_latipes_hsok
ENSLBEG00000014675	scaf4a	99	68.135	ENSOMEG00000014482	scaf4a	98	65.717	Oryzias_melastigma
ENSLBEG00000014675	scaf4a	61	63.352	ENSPKIG00000022408	scaf4a	96	63.585	Paramormyrops_kingsleyae
ENSLBEG00000014675	scaf4a	55	41.123	ENSPSIG00000014242	SCAF4	81	53.276	Pelodiscus_sinensis
ENSLBEG00000014675	scaf4a	100	51.447	ENSPMGG00000016741	scaf4a	93	52.536	Periophthalmus_magnuspinnatus
ENSLBEG00000014675	scaf4a	85	71.016	ENSPFOG00000017156	scaf4a	94	71.970	Poecilia_formosa
ENSLBEG00000014675	scaf4a	65	79.887	ENSPLAG00000001972	scaf4a	92	76.738	Poecilia_latipinna
ENSLBEG00000014675	scaf4a	52	52.941	ENSPNYG00000010526	scaf4b	74	50.347	Pundamilia_nyererei
ENSLBEG00000014675	scaf4a	51	74.336	ENSPNAG00000015199	-	53	74.312	Pygocentrus_nattereri
ENSLBEG00000014675	scaf4a	70	57.444	ENSPNAG00000016892	scaf4a	98	52.837	Pygocentrus_nattereri
ENSLBEG00000014675	scaf4a	54	54.823	ENSRBIG00000040007	SCAF4	77	51.728	Rhinopithecus_bieti
ENSLBEG00000014675	scaf4a	91	44.824	ENSSFOG00015006338	scaf4a	79	54.071	Scleropages_formosus
ENSLBEG00000014675	scaf4a	99	73.573	ENSSMAG00000017901	scaf4a	97	73.292	Scophthalmus_maximus
ENSLBEG00000014675	scaf4a	79	42.357	ENSSMAG00000003738	scaf4b	95	42.232	Scophthalmus_maximus
ENSLBEG00000014675	scaf4a	100	80.000	ENSSDUG00000012918	scaf4a	98	79.556	Seriola_dumerili
ENSLBEG00000014675	scaf4a	100	80.267	ENSSLDG00000021671	scaf4a	98	79.733	Seriola_lalandi_dorsalis
ENSLBEG00000014675	scaf4a	72	40.485	ENSTRUG00000009536	-	52	73.571	Takifugu_rubripes
ENSLBEG00000014675	scaf4a	54	54.823	ENSUMAG00000016962	SCAF4	79	52.843	Ursus_maritimus
ENSLBEG00000014675	scaf4a	60	52.778	ENSXETG00000007351	scaf4	84	49.175	Xenopus_tropicalis