EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000014862 (Gene tree)
Gene ID: 109991964
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 13427 bases
Position: chrFKLU01000219.1:528421-541847
Accession: 109991964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000019395	UPF1_Zn_bind	PF09416.10	2.3e-75	1	1
ENSLBEP00000019395	ResIII	PF04851.15	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000020446	-	3525	XM_020644413	ENSLBEP00000019395	1113 (aa)	XP_020500069	UPI0009B4159B

Gene Model

Click here to download ENSLBEG00000014862's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000014862's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000014862	upf1	100	92.301	ENSLBEG00000027848	-	100	90.779

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000014862	upf1	100	90.485	ENSG00000005007	UPF1	100	89.339	Homo_sapiens
ENSLBEG00000014862	upf1	100	97.934	ENSAPOG00000023773	upf1	100	97.934	Acanthochromis_polyacanthus
ENSLBEG00000014862	upf1	100	92.473	ENSAPOG00000010916	-	100	91.846	Acanthochromis_polyacanthus
ENSLBEG00000014862	upf1	100	89.833	ENSAMEG00000011474	UPF1	100	88.782	Ailuropoda_melanoleuca
ENSLBEG00000014862	upf1	100	96.137	ENSACIG00000019949	upf1	100	96.137	Amphilophus_citrinellus
ENSLBEG00000014862	upf1	93	92.308	ENSACIG00000010985	-	99	91.346	Amphilophus_citrinellus
ENSLBEG00000014862	upf1	100	98.023	ENSAOCG00000018519	upf1	100	98.023	Amphiprion_ocellaris
ENSLBEG00000014862	upf1	100	92.473	ENSAOCG00000006352	-	100	91.846	Amphiprion_ocellaris
ENSLBEG00000014862	upf1	100	98.023	ENSAPEG00000016344	upf1	100	98.023	Amphiprion_percula
ENSLBEG00000014862	upf1	100	92.384	ENSAPEG00000006292	-	100	91.846	Amphiprion_percula
ENSLBEG00000014862	upf1	100	97.670	ENSATEG00000017867	upf1	100	97.670	Anabas_testudineus
ENSLBEG00000014862	upf1	100	92.294	ENSATEG00000016606	-	100	91.577	Anabas_testudineus
ENSLBEG00000014862	upf1	95	92.243	ENSAPLG00000009175	UPF1	100	90.935	Anas_platyrhynchos
ENSLBEG00000014862	upf1	95	90.534	ENSANAG00000024107	UPF1	95	89.222	Aotus_nancymaae
ENSLBEG00000014862	upf1	100	92.115	ENSACLG00000022630	-	100	91.667	Astatotilapia_calliptera
ENSLBEG00000014862	upf1	100	96.316	ENSACLG00000007181	upf1	100	96.316	Astatotilapia_calliptera
ENSLBEG00000014862	upf1	100	93.178	ENSAMXG00000042187	upf1	100	93.088	Astyanax_mexicanus
ENSLBEG00000014862	upf1	100	89.939	ENSBTAG00000020922	UPF1	100	88.801	Bos_taurus
ENSLBEG00000014862	upf1	80	54.153	WBGene00004880	smg-2	83	54.042	Caenorhabditis_elegans
ENSLBEG00000014862	upf1	100	89.616	ENSCJAG00000019627	UPF1	100	88.482	Callithrix_jacchus
ENSLBEG00000014862	upf1	100	89.703	ENSCAFG00000014578	UPF1	100	88.569	Canis_familiaris
ENSLBEG00000014862	upf1	100	90.573	ENSCAFG00020012347	UPF1	100	89.427	Canis_lupus_dingo
ENSLBEG00000014862	upf1	100	90.813	ENSCHIG00000011018	UPF1	100	89.664	Capra_hircus
ENSLBEG00000014862	upf1	95	91.940	ENSTSYG00000008877	UPF1	98	90.628	Carlito_syrichta
ENSLBEG00000014862	upf1	96	91.196	ENSCAPG00000005758	UPF1	95	90.534	Cavia_aperea
ENSLBEG00000014862	upf1	100	90.861	ENSCPOG00000025463	UPF1	100	89.520	Cavia_porcellus
ENSLBEG00000014862	upf1	100	90.485	ENSCCAG00000032175	UPF1	100	89.339	Cebus_capucinus
ENSLBEG00000014862	upf1	94	91.910	ENSCATG00000040306	UPF1	98	90.440	Cercocebus_atys
ENSLBEG00000014862	upf1	95	91.846	ENSCLAG00000004037	UPF1	99	90.628	Chinchilla_lanigera
ENSLBEG00000014862	upf1	100	90.485	ENSCSAG00000005276	UPF1	100	89.339	Chlorocebus_sabaeus
ENSLBEG00000014862	upf1	100	91.320	ENSCPBG00000012513	UPF1	100	89.991	Chrysemys_picta_bellii
ENSLBEG00000014862	upf1	76	79.812	ENSCING00000021399	-	99	79.460	Ciona_intestinalis
ENSLBEG00000014862	upf1	99	71.708	ENSCSAVG00000006533	-	99	70.473	Ciona_savignyi
ENSLBEG00000014862	upf1	95	91.846	ENSCANG00000029819	UPF1	97	90.534	Colobus_angolensis_palliatus
ENSLBEG00000014862	upf1	100	90.531	ENSCGRG00001021067	Upf1	100	89.469	Cricetulus_griseus_chok1gshd
ENSLBEG00000014862	upf1	96	90.994	ENSCGRG00000013480	Upf1	98	90.253	Cricetulus_griseus_crigri
ENSLBEG00000014862	upf1	100	92.556	ENSCSEG00000016159	-	100	91.390	Cynoglossus_semilaevis
ENSLBEG00000014862	upf1	100	89.238	ENSCSEG00000017239	upf1	100	89.058	Cynoglossus_semilaevis
ENSLBEG00000014862	upf1	100	91.756	ENSCVAG00000010561	upf1	100	91.308	Cyprinodon_variegatus
ENSLBEG00000014862	upf1	100	93.178	ENSDARG00000016302	upf1	100	93.088	Danio_rerio
ENSLBEG00000014862	upf1	95	89.326	ENSDORG00000009984	Upf1	95	88.109	Dipodomys_ordii
ENSLBEG00000014862	upf1	83	72.601	FBgn0030354	Upf1	81	71.266	Drosophila_melanogaster
ENSLBEG00000014862	upf1	54	86.755	ENSEBUG00000010069	upf1	96	87.086	Eptatretus_burgeri
ENSLBEG00000014862	upf1	100	90.813	ENSEASG00005006549	UPF1	100	89.664	Equus_asinus_asinus
ENSLBEG00000014862	upf1	100	90.813	ENSECAG00000010639	UPF1	100	89.664	Equus_caballus
ENSLBEG00000014862	upf1	100	93.447	ENSELUG00000020917	upf1	100	92.844	Esox_lucius
ENSLBEG00000014862	upf1	100	92.321	ENSELUG00000012916	-	100	92.143	Esox_lucius
ENSLBEG00000014862	upf1	100	89.703	ENSFCAG00000009757	UPF1	100	88.569	Felis_catus
ENSLBEG00000014862	upf1	95	92.850	ENSFALG00000009312	UPF1	96	91.439	Ficedula_albicollis
ENSLBEG00000014862	upf1	95	91.753	ENSFDAG00000014816	UPF1	99	90.534	Fukomys_damarensis
ENSLBEG00000014862	upf1	100	92.672	ENSFHEG00000006428	upf1	98	94.660	Fundulus_heteroclitus
ENSLBEG00000014862	upf1	87	94.264	ENSFHEG00000016276	-	96	94.264	Fundulus_heteroclitus
ENSLBEG00000014862	upf1	100	90.957	ENSGMOG00000007541	upf1	100	90.691	Gadus_morhua
ENSLBEG00000014862	upf1	100	90.997	ENSGALG00000003220	UPF1	100	89.673	Gallus_gallus
ENSLBEG00000014862	upf1	62	96.542	ENSGAFG00000015443	-	85	96.542	Gambusia_affinis
ENSLBEG00000014862	upf1	100	91.756	ENSGAFG00000004831	upf1	100	91.308	Gambusia_affinis
ENSLBEG00000014862	upf1	100	91.637	ENSGAGG00000022217	UPF1	100	90.569	Gopherus_agassizii
ENSLBEG00000014862	upf1	95	92.803	ENSGGOG00000002608	UPF1	99	91.477	Gorilla_gorilla
ENSLBEG00000014862	upf1	85	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSLBEG00000014862	upf1	88	96.154	ENSHBUG00000014694	upf1	100	96.154	Haplochromis_burtoni
ENSLBEG00000014862	upf1	100	89.442	ENSHGLG00000010900	UPF1	100	88.569	Heterocephalus_glaber_female
ENSLBEG00000014862	upf1	95	89.972	ENSHGLG00100005904	UPF1	96	88.941	Heterocephalus_glaber_male
ENSLBEG00000014862	upf1	100	91.585	ENSHCOG00000008918	upf1	100	91.487	Hippocampus_comes
ENSLBEG00000014862	upf1	100	93.357	ENSIPUG00000005108	UPF1	100	93.178	Ictalurus_punctatus
ENSLBEG00000014862	upf1	100	90.396	ENSSTOG00000009196	UPF1	100	89.339	Ictidomys_tridecemlineatus
ENSLBEG00000014862	upf1	100	89.903	ENSJJAG00000023151	Upf1	100	88.850	Jaculus_jaculus
ENSLBEG00000014862	upf1	100	91.935	ENSKMAG00000004962	upf1	100	91.308	Kryptolebias_marmoratus
ENSLBEG00000014862	upf1	64	92.275	ENSLACG00000008482	UPF1	100	90.309	Latimeria_chalumnae
ENSLBEG00000014862	upf1	100	92.825	ENSLOCG00000002072	upf1	100	92.197	Lepisosteus_oculatus
ENSLBEG00000014862	upf1	100	89.598	ENSLAFG00000014963	UPF1	100	88.462	Loxodonta_africana
ENSLBEG00000014862	upf1	100	90.246	ENSMFAG00000037748	UPF1	100	89.104	Macaca_fascicularis
ENSLBEG00000014862	upf1	100	90.009	ENSMMUG00000023286	UPF1	100	88.869	Macaca_mulatta
ENSLBEG00000014862	upf1	100	90.246	ENSMNEG00000000046	UPF1	100	89.104	Macaca_nemestrina
ENSLBEG00000014862	upf1	95	91.846	ENSMLEG00000028404	UPF1	99	90.534	Mandrillus_leucophaeus
ENSLBEG00000014862	upf1	100	97.491	ENSMAMG00000006229	upf1	100	97.491	Mastacembelus_armatus
ENSLBEG00000014862	upf1	100	92.122	ENSMAMG00000006231	-	100	91.674	Mastacembelus_armatus
ENSLBEG00000014862	upf1	100	97.215	ENSMZEG00005003489	upf1	100	97.215	Maylandia_zebra
ENSLBEG00000014862	upf1	100	92.115	ENSMZEG00005016386	-	100	91.667	Maylandia_zebra
ENSLBEG00000014862	upf1	95	91.760	ENSMGAG00000004745	UPF1	100	90.449	Meleagris_gallopavo
ENSLBEG00000014862	upf1	95	91.471	ENSMAUG00000011398	Upf1	95	90.253	Mesocricetus_auratus
ENSLBEG00000014862	upf1	100	90.573	ENSMICG00000001659	UPF1	100	89.427	Microcebus_murinus
ENSLBEG00000014862	upf1	100	89.658	ENSMOCG00000005699	Upf1	100	88.694	Microtus_ochrogaster
ENSLBEG00000014862	upf1	95	90.000	ENSMMOG00000007537	-	99	89.340	Mola_mola
ENSLBEG00000014862	upf1	100	95.867	ENSMMOG00000007881	upf1	100	95.867	Mola_mola
ENSLBEG00000014862	upf1	100	89.730	ENSMODG00000003689	UPF1	100	88.686	Monodelphis_domestica
ENSLBEG00000014862	upf1	100	91.161	ENSMALG00000018100	-	100	90.536	Monopterus_albus
ENSLBEG00000014862	upf1	100	95.058	ENSMALG00000000144	upf1	100	95.058	Monopterus_albus
ENSLBEG00000014862	upf1	100	90.442	MGP_CAROLIEiJ_G0031142	Upf1	100	89.381	Mus_caroli
ENSLBEG00000014862	upf1	100	90.442	ENSMUSG00000058301	Upf1	100	89.381	Mus_musculus
ENSLBEG00000014862	upf1	100	90.442	MGP_PahariEiJ_G0021607	Upf1	100	89.381	Mus_pahari
ENSLBEG00000014862	upf1	100	90.442	MGP_SPRETEiJ_G0032260	Upf1	100	89.381	Mus_spretus
ENSLBEG00000014862	upf1	100	90.573	ENSMPUG00000015516	UPF1	100	89.427	Mustela_putorius_furo
ENSLBEG00000014862	upf1	99	90.451	ENSMLUG00000012122	UPF1	99	89.302	Myotis_lucifugus
ENSLBEG00000014862	upf1	100	89.423	ENSNGAG00000024107	Upf1	100	88.374	Nannospalax_galili
ENSLBEG00000014862	upf1	100	93.531	ENSNBRG00000000670	upf1	100	93.351	Neolamprologus_brichardi
ENSLBEG00000014862	upf1	100	88.764	ENSNBRG00000022069	-	99	91.075	Neolamprologus_brichardi
ENSLBEG00000014862	upf1	95	86.223	ENSNLEG00000006062	UPF1	99	84.911	Nomascus_leucogenys
ENSLBEG00000014862	upf1	83	86.122	ENSMEUG00000014146	-	83	83.460	Notamacropus_eugenii
ENSLBEG00000014862	upf1	95	86.364	ENSOPRG00000014018	UPF1	88	89.923	Ochotona_princeps
ENSLBEG00000014862	upf1	100	90.764	ENSODEG00000012426	UPF1	100	89.609	Octodon_degus
ENSLBEG00000014862	upf1	100	97.035	ENSONIG00000010452	upf1	100	97.035	Oreochromis_niloticus
ENSLBEG00000014862	upf1	100	92.115	ENSONIG00000012729	-	100	91.667	Oreochromis_niloticus
ENSLBEG00000014862	upf1	100	89.773	ENSOANG00000004568	UPF1	100	88.549	Ornithorhynchus_anatinus
ENSLBEG00000014862	upf1	100	92.025	ENSORLG00000008453	upf1	100	90.860	Oryzias_latipes
ENSLBEG00000014862	upf1	100	91.943	ENSORLG00020014758	upf1	100	90.779	Oryzias_latipes_hni
ENSLBEG00000014862	upf1	100	91.943	ENSORLG00015010165	upf1	100	90.779	Oryzias_latipes_hsok
ENSLBEG00000014862	upf1	100	92.384	ENSOMEG00000003665	upf1	100	90.502	Oryzias_melastigma
ENSLBEG00000014862	upf1	100	90.573	ENSOGAG00000012866	UPF1	100	89.427	Otolemur_garnettii
ENSLBEG00000014862	upf1	96	88.838	ENSOARG00000010739	UPF1	100	87.387	Ovis_aries
ENSLBEG00000014862	upf1	95	91.846	ENSPPAG00000043884	UPF1	96	90.534	Pan_paniscus
ENSLBEG00000014862	upf1	100	89.703	ENSPPRG00000023470	UPF1	100	88.569	Panthera_pardus
ENSLBEG00000014862	upf1	95	90.737	ENSPTIG00000010159	UPF1	99	89.414	Panthera_tigris_altaica
ENSLBEG00000014862	upf1	100	90.246	ENSPTRG00000010721	UPF1	100	89.104	Pan_troglodytes
ENSLBEG00000014862	upf1	100	90.246	ENSPANG00000008847	UPF1	100	89.104	Papio_anubis
ENSLBEG00000014862	upf1	89	95.495	ENSPKIG00000006069	upf1	96	95.495	Paramormyrops_kingsleyae
ENSLBEG00000014862	upf1	70	91.421	ENSPSIG00000009491	UPF1	100	89.501	Pelodiscus_sinensis
ENSLBEG00000014862	upf1	100	92.294	ENSPMGG00000017327	upf1	100	90.901	Periophthalmus_magnuspinnatus
ENSLBEG00000014862	upf1	100	89.658	ENSPEMG00000001085	Upf1	100	88.606	Peromyscus_maniculatus_bairdii
ENSLBEG00000014862	upf1	100	86.465	ENSPMAG00000001206	upf1	100	85.574	Petromyzon_marinus
ENSLBEG00000014862	upf1	100	91.093	ENSPCIG00000006156	UPF1	100	89.947	Phascolarctos_cinereus
ENSLBEG00000014862	upf1	100	94.250	ENSPLAG00000018155	-	100	92.812	Poecilia_latipinna
ENSLBEG00000014862	upf1	100	91.577	ENSPLAG00000016232	-	100	91.398	Poecilia_latipinna
ENSLBEG00000014862	upf1	100	93.890	ENSPMEG00000011443	-	100	92.812	Poecilia_mexicana
ENSLBEG00000014862	upf1	100	91.495	ENSPMEG00000016319	-	100	91.316	Poecilia_mexicana
ENSLBEG00000014862	upf1	100	94.260	ENSPREG00000009940	upf1	100	92.915	Poecilia_reticulata
ENSLBEG00000014862	upf1	100	91.398	ENSPREG00000011247	-	100	91.219	Poecilia_reticulata
ENSLBEG00000014862	upf1	100	84.555	ENSPPYG00000009752	UPF1	100	83.944	Pongo_abelii
ENSLBEG00000014862	upf1	76	98.990	ENSPCAG00000012962	UPF1	76	98.990	Procavia_capensis
ENSLBEG00000014862	upf1	100	90.175	ENSPCOG00000023813	UPF1	100	89.035	Propithecus_coquereli
ENSLBEG00000014862	upf1	67	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSLBEG00000014862	upf1	100	92.115	ENSPNYG00000016731	-	100	91.667	Pundamilia_nyererei
ENSLBEG00000014862	upf1	100	97.215	ENSPNYG00000003694	upf1	100	97.215	Pundamilia_nyererei
ENSLBEG00000014862	upf1	100	93.268	ENSPNAG00000025614	upf1	100	93.178	Pygocentrus_nattereri
ENSLBEG00000014862	upf1	100	90.442	ENSRNOG00000020134	Upf1	100	89.381	Rattus_norvegicus
ENSLBEG00000014862	upf1	95	89.503	ENSRBIG00000013894	UPF1	98	91.173	Rhinopithecus_bieti
ENSLBEG00000014862	upf1	95	91.846	ENSRROG00000040935	UPF1	98	91.173	Rhinopithecus_roxellana
ENSLBEG00000014862	upf1	72	57.572	YMR080C	NAM7	82	57.572	Saccharomyces_cerevisiae
ENSLBEG00000014862	upf1	95	91.839	ENSSBOG00000023632	UPF1	96	90.525	Saimiri_boliviensis_boliviensis
ENSLBEG00000014862	upf1	95	92.142	ENSSHAG00000010499	UPF1	100	90.833	Sarcophilus_harrisii
ENSLBEG00000014862	upf1	100	93.011	ENSSFOG00015021095	upf1	100	92.294	Scleropages_formosus
ENSLBEG00000014862	upf1	100	92.390	ENSSMAG00000021018	-	100	91.674	Scophthalmus_maximus
ENSLBEG00000014862	upf1	100	96.858	ENSSMAG00000005055	upf1	100	96.858	Scophthalmus_maximus
ENSLBEG00000014862	upf1	100	98.029	ENSSDUG00000013320	upf1	100	98.029	Seriola_dumerili
ENSLBEG00000014862	upf1	100	92.301	ENSSDUG00000009629	-	100	91.674	Seriola_dumerili
ENSLBEG00000014862	upf1	100	92.301	ENSSLDG00000006878	-	100	91.674	Seriola_lalandi_dorsalis
ENSLBEG00000014862	upf1	100	97.222	ENSSLDG00000020868	upf1	100	97.222	Seriola_lalandi_dorsalis
ENSLBEG00000014862	upf1	100	91.385	ENSSPUG00000010538	UPF1	98	94.831	Sphenodon_punctatus
ENSLBEG00000014862	upf1	100	92.384	ENSSPAG00000011521	-	100	91.577	Stegastes_partitus
ENSLBEG00000014862	upf1	100	93.980	ENSSPAG00000000003	upf1	100	93.980	Stegastes_partitus
ENSLBEG00000014862	upf1	100	90.813	ENSSSCG00000039301	UPF1	99	91.493	Sus_scrofa
ENSLBEG00000014862	upf1	81	87.128	ENSTGUG00000001057	UPF1	100	90.680	Taeniopygia_guttata
ENSLBEG00000014862	upf1	100	91.308	ENSTRUG00000005131	-	100	90.771	Takifugu_rubripes
ENSLBEG00000014862	upf1	100	94.794	ENSTRUG00000000150	upf1	100	94.345	Takifugu_rubripes
ENSLBEG00000014862	upf1	100	87.191	ENSTTRG00000011544	UPF1	100	85.954	Tursiops_truncatus
ENSLBEG00000014862	upf1	100	90.573	ENSUAMG00000007093	UPF1	100	89.427	Ursus_americanus
ENSLBEG00000014862	upf1	96	92.041	ENSUMAG00000006652	UPF1	99	91.837	Ursus_maritimus
ENSLBEG00000014862	upf1	100	90.573	ENSVVUG00000007797	UPF1	100	89.427	Vulpes_vulpes
ENSLBEG00000014862	upf1	100	78.261	ENSXETG00000013602	upf1	100	77.304	Xenopus_tropicalis
ENSLBEG00000014862	upf1	94	92.065	ENSXCOG00000005764	-	99	91.587	Xiphophorus_couchianus
ENSLBEG00000014862	upf1	97	92.658	ENSXCOG00000015275	-	96	92.286	Xiphophorus_couchianus
ENSLBEG00000014862	upf1	100	91.674	ENSXMAG00000002540	-	100	91.226	Xiphophorus_maculatus
ENSLBEG00000014862	upf1	100	92.722	ENSXMAG00000001703	-	100	92.363	Xiphophorus_maculatus