EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000015018 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specificity factor subunit 3-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 6359 bases
Position: chrFKLU01006103.1:972-7330
Accession: 109977913
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000019580	CPSF73-100_C	PF11718.8	5.8e-43	1	1
ENSLBEP00000019580	Beta-Casp	PF10996.8	4e-19	1	1
ENSLBEP00000019580	RMMBL	PF07521.12	8.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000020640	-	1116	XM_020627542	ENSLBEP00000019580	371 (aa)	XP_020483198	-

Gene Model

Click here to download ENSLBEG00000015018's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000015018's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000015018	-	99	81.867	ENSLBEG00000013492	CPSF3	57	81.867

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000015018	-	99	79.625	ENSG00000119203	CPSF3	58	79.625	Homo_sapiens
ENSLBEG00000015018	-	99	88.978	ENSAPOG00000022087	cpsf3	60	88.108	Acanthochromis_polyacanthus
ENSLBEG00000015018	-	99	80.161	ENSAMEG00000008493	CPSF3	55	80.161	Ailuropoda_melanoleuca
ENSLBEG00000015018	-	99	87.097	ENSACIG00000009846	cpsf3	59	87.097	Amphilophus_citrinellus
ENSLBEG00000015018	-	99	82.306	ENSACIG00000023663	CPSF3	59	82.306	Amphilophus_citrinellus
ENSLBEG00000015018	-	99	89.247	ENSAOCG00000022056	cpsf3	51	93.168	Amphiprion_ocellaris
ENSLBEG00000015018	-	99	82.880	ENSAOCG00000010077	CPSF3	58	82.880	Amphiprion_ocellaris
ENSLBEG00000015018	-	99	82.842	ENSAPEG00000021167	CPSF3	59	82.258	Amphiprion_percula
ENSLBEG00000015018	-	99	89.305	ENSAPEG00000019526	cpsf3	58	88.283	Amphiprion_percula
ENSLBEG00000015018	-	99	76.839	ENSATEG00000014525	CPSF3	52	76.839	Anabas_testudineus
ENSLBEG00000015018	-	99	90.591	ENSATEG00000003959	cpsf3	58	88.710	Anabas_testudineus
ENSLBEG00000015018	-	99	79.088	ENSAPLG00000006941	CPSF3	55	79.088	Anas_platyrhynchos
ENSLBEG00000015018	-	99	77.480	ENSACAG00000001759	CPSF3	59	77.480	Anolis_carolinensis
ENSLBEG00000015018	-	99	71.314	ENSANAG00000031254	CPSF3	54	71.314	Aotus_nancymaae
ENSLBEG00000015018	-	99	82.306	ENSACLG00000018846	CPSF3	59	82.306	Astatotilapia_calliptera
ENSLBEG00000015018	-	99	90.217	ENSACLG00000014484	cpsf3	59	90.217	Astatotilapia_calliptera
ENSLBEG00000015018	-	99	81.471	ENSAMXG00000004786	cpsf3	58	81.471	Astyanax_mexicanus
ENSLBEG00000015018	-	99	80.161	ENSBTAG00000019735	CPSF3	55	80.161	Bos_taurus
ENSLBEG00000015018	-	99	79.357	ENSCJAG00000006276	CPSF3	55	79.357	Callithrix_jacchus
ENSLBEG00000015018	-	99	80.161	ENSCAFG00000003375	CPSF3	52	80.161	Canis_familiaris
ENSLBEG00000015018	-	90	82.059	ENSCAFG00020026799	CPSF3	55	82.059	Canis_lupus_dingo
ENSLBEG00000015018	-	99	80.161	ENSCHIG00000013973	CPSF3	55	80.161	Capra_hircus
ENSLBEG00000015018	-	99	79.625	ENSTSYG00000002967	CPSF3	55	79.625	Carlito_syrichta
ENSLBEG00000015018	-	99	80.161	ENSCAPG00000013851	CPSF3	56	80.161	Cavia_aperea
ENSLBEG00000015018	-	99	80.161	ENSCPOG00000011299	CPSF3	55	80.161	Cavia_porcellus
ENSLBEG00000015018	-	99	79.357	ENSCCAG00000036730	CPSF3	55	79.357	Cebus_capucinus
ENSLBEG00000015018	-	99	76.902	ENSCATG00000014770	CPSF3	52	85.809	Cercocebus_atys
ENSLBEG00000015018	-	99	80.161	ENSCLAG00000002727	CPSF3	55	80.161	Chinchilla_lanigera
ENSLBEG00000015018	-	99	65.147	ENSCSAG00000007125	CPSF3	51	65.147	Chlorocebus_sabaeus
ENSLBEG00000015018	-	90	51.765	ENSCHOG00000000180	CPSF3	51	51.765	Choloepus_hoffmanni
ENSLBEG00000015018	-	99	78.933	ENSCPBG00000014074	CPSF3	54	78.933	Chrysemys_picta_bellii
ENSLBEG00000015018	-	99	59.424	ENSCING00000007214	-	55	59.424	Ciona_intestinalis
ENSLBEG00000015018	-	99	75.204	ENSCANG00000034435	CPSF3	56	75.204	Colobus_angolensis_palliatus
ENSLBEG00000015018	-	99	79.144	ENSCGRG00001013134	Cpsf3	55	79.144	Cricetulus_griseus_chok1gshd
ENSLBEG00000015018	-	99	79.144	ENSCGRG00000018319	Cpsf3	55	79.144	Cricetulus_griseus_crigri
ENSLBEG00000015018	-	99	82.656	ENSCSEG00000002021	CPSF3	58	82.656	Cynoglossus_semilaevis
ENSLBEG00000015018	-	77	82.394	ENSCVAG00000022039	-	86	82.394	Cyprinodon_variegatus
ENSLBEG00000015018	-	99	81.720	ENSCVAG00000015067	CPSF3	54	81.720	Cyprinodon_variegatus
ENSLBEG00000015018	-	99	81.183	ENSDARG00000027649	cpsf3	54	81.183	Danio_rerio
ENSLBEG00000015018	-	99	78.877	ENSDNOG00000008940	CPSF3	52	78.877	Dasypus_novemcinctus
ENSLBEG00000015018	-	99	79.625	ENSDORG00000014263	Cpsf3	57	79.625	Dipodomys_ordii
ENSLBEG00000015018	-	99	59.677	FBgn0261065	Cpsf73	54	59.677	Drosophila_melanogaster
ENSLBEG00000015018	-	99	79.893	ENSETEG00000003893	CPSF3	57	79.893	Echinops_telfairi
ENSLBEG00000015018	-	99	70.588	ENSEBUG00000009018	cpsf3	52	70.588	Eptatretus_burgeri
ENSLBEG00000015018	-	99	80.161	ENSEASG00005003970	CPSF3	55	80.161	Equus_asinus_asinus
ENSLBEG00000015018	-	99	80.161	ENSECAG00000019911	CPSF3	51	85.174	Equus_caballus
ENSLBEG00000015018	-	99	66.756	ENSEEUG00000015422	CPSF3	55	66.756	Erinaceus_europaeus
ENSLBEG00000015018	-	99	86.104	ENSELUG00000013775	cpsf3	58	86.104	Esox_lucius
ENSLBEG00000015018	-	99	80.161	ENSFCAG00000007852	CPSF3	58	80.161	Felis_catus
ENSLBEG00000015018	-	99	79.088	ENSFALG00000006572	CPSF3	58	79.088	Ficedula_albicollis
ENSLBEG00000015018	-	99	79.625	ENSFDAG00000006317	CPSF3	54	79.625	Fukomys_damarensis
ENSLBEG00000015018	-	99	86.133	ENSFHEG00000014774	cpsf3	55	86.133	Fundulus_heteroclitus
ENSLBEG00000015018	-	99	68.435	ENSFHEG00000012186	CPSF3	91	68.435	Fundulus_heteroclitus
ENSLBEG00000015018	-	99	84.946	ENSGMOG00000003157	cpsf3	54	84.946	Gadus_morhua
ENSLBEG00000015018	-	99	78.400	ENSGALG00000016424	CPSF3	59	78.400	Gallus_gallus
ENSLBEG00000015018	-	99	83.065	ENSGAFG00000008016	CPSF3	54	83.065	Gambusia_affinis
ENSLBEG00000015018	-	99	87.366	ENSGAFG00000019449	cpsf3	59	87.366	Gambusia_affinis
ENSLBEG00000015018	-	99	79.200	ENSGAGG00000025583	CPSF3	75	79.200	Gopherus_agassizii
ENSLBEG00000015018	-	99	79.625	ENSGGOG00000001757	CPSF3	59	79.625	Gorilla_gorilla
ENSLBEG00000015018	-	99	90.217	ENSHBUG00000001188	cpsf3	59	90.217	Haplochromis_burtoni
ENSLBEG00000015018	-	99	82.385	ENSHBUG00000014332	CPSF3	92	82.385	Haplochromis_burtoni
ENSLBEG00000015018	-	99	79.357	ENSHGLG00000000666	CPSF3	54	79.357	Heterocephalus_glaber_female
ENSLBEG00000015018	-	99	79.357	ENSHGLG00100007765	CPSF3	54	79.357	Heterocephalus_glaber_male
ENSLBEG00000015018	-	99	86.559	ENSHCOG00000007251	cpsf3	54	86.559	Hippocampus_comes
ENSLBEG00000015018	-	99	81.989	ENSHCOG00000015957	CPSF3	53	81.989	Hippocampus_comes
ENSLBEG00000015018	-	99	82.888	ENSIPUG00000023488	cpsf3	58	80.697	Ictalurus_punctatus
ENSLBEG00000015018	-	99	79.357	ENSSTOG00000004476	CPSF3	55	79.357	Ictidomys_tridecemlineatus
ENSLBEG00000015018	-	99	78.877	ENSJJAG00000023415	Cpsf3	55	78.877	Jaculus_jaculus
ENSLBEG00000015018	-	99	88.441	ENSKMAG00000002806	cpsf3	54	88.441	Kryptolebias_marmoratus
ENSLBEG00000015018	-	99	82.258	ENSKMAG00000007317	CPSF3	54	82.258	Kryptolebias_marmoratus
ENSLBEG00000015018	-	99	70.053	ENSLACG00000008308	CPSF3	54	70.053	Latimeria_chalumnae
ENSLBEG00000015018	-	99	81.217	ENSLOCG00000016823	cpsf3	55	81.217	Lepisosteus_oculatus
ENSLBEG00000015018	-	99	79.893	ENSLAFG00000009467	CPSF3	55	79.893	Loxodonta_africana
ENSLBEG00000015018	-	99	79.357	ENSMFAG00000001339	CPSF3	58	79.357	Macaca_fascicularis
ENSLBEG00000015018	-	99	79.357	ENSMMUG00000018038	CPSF3	58	79.357	Macaca_mulatta
ENSLBEG00000015018	-	90	77.876	ENSMNEG00000039447	CPSF3	54	77.876	Macaca_nemestrina
ENSLBEG00000015018	-	99	79.625	ENSMLEG00000026825	CPSF3	55	79.625	Mandrillus_leucophaeus
ENSLBEG00000015018	-	99	82.385	ENSMAMG00000008835	CPSF3	58	82.385	Mastacembelus_armatus
ENSLBEG00000015018	-	99	87.097	ENSMAMG00000003076	cpsf3	54	92.188	Mastacembelus_armatus
ENSLBEG00000015018	-	99	83.065	ENSMZEG00005006258	CPSF3	59	82.306	Maylandia_zebra
ENSLBEG00000015018	-	99	90.217	ENSMZEG00005014358	cpsf3	59	90.217	Maylandia_zebra
ENSLBEG00000015018	-	99	78.667	ENSMGAG00000013995	CPSF3	56	78.667	Meleagris_gallopavo
ENSLBEG00000015018	-	91	76.744	ENSMAUG00000000166	Cpsf3	91	76.744	Mesocricetus_auratus
ENSLBEG00000015018	-	99	75.538	ENSMICG00000002363	CPSF3	58	75.538	Microcebus_murinus
ENSLBEG00000015018	-	90	81.176	ENSMOCG00000020067	Cpsf3	52	81.176	Microtus_ochrogaster
ENSLBEG00000015018	-	99	82.016	ENSMMOG00000018212	CPSF3	56	82.016	Mola_mola
ENSLBEG00000015018	-	99	77.368	ENSMODG00000014703	CPSF3	55	77.368	Monodelphis_domestica
ENSLBEG00000015018	-	99	89.516	ENSMALG00000016416	cpsf3	59	88.587	Monopterus_albus
ENSLBEG00000015018	-	94	82.022	ENSMALG00000011474	CPSF3	58	82.022	Monopterus_albus
ENSLBEG00000015018	-	99	79.893	MGP_CAROLIEiJ_G0017640	Cpsf3	55	79.893	Mus_caroli
ENSLBEG00000015018	-	99	79.893	ENSMUSG00000054309	Cpsf3	55	79.893	Mus_musculus
ENSLBEG00000015018	-	99	79.625	MGP_PahariEiJ_G0029397	Cpsf3	55	79.625	Mus_pahari
ENSLBEG00000015018	-	99	79.893	MGP_SPRETEiJ_G0018481	Cpsf3	55	79.893	Mus_spretus
ENSLBEG00000015018	-	99	80.161	ENSMPUG00000013213	CPSF3	55	80.161	Mustela_putorius_furo
ENSLBEG00000015018	-	99	79.947	ENSMLUG00000010636	CPSF3	55	79.947	Myotis_lucifugus
ENSLBEG00000015018	-	99	79.144	ENSNGAG00000019836	Cpsf3	55	79.144	Nannospalax_galili
ENSLBEG00000015018	-	99	82.306	ENSNBRG00000010525	CPSF3	59	82.306	Neolamprologus_brichardi
ENSLBEG00000015018	-	99	89.674	ENSNBRG00000004770	cpsf3	59	89.674	Neolamprologus_brichardi
ENSLBEG00000015018	-	99	79.357	ENSNLEG00000013359	CPSF3	58	79.357	Nomascus_leucogenys
ENSLBEG00000015018	-	90	78.466	ENSOPRG00000008902	CPSF3	50	78.466	Ochotona_princeps
ENSLBEG00000015018	-	99	80.429	ENSODEG00000003129	CPSF3	55	80.429	Octodon_degus
ENSLBEG00000015018	-	99	89.785	ENSONIG00000018812	cpsf3	54	89.785	Oreochromis_niloticus
ENSLBEG00000015018	-	99	79.088	ENSOANG00000008577	CPSF3	66	79.088	Ornithorhynchus_anatinus
ENSLBEG00000015018	-	99	80.161	ENSOCUG00000003728	CPSF3	55	80.161	Oryctolagus_cuniculus
ENSLBEG00000015018	-	99	85.067	ENSORLG00000018854	cpsf3	55	85.067	Oryzias_latipes
ENSLBEG00000015018	-	99	84.800	ENSORLG00020013331	cpsf3	58	84.054	Oryzias_latipes_hni
ENSLBEG00000015018	-	99	85.067	ENSORLG00015011017	cpsf3	59	84.906	Oryzias_latipes_hsok
ENSLBEG00000015018	-	99	86.059	ENSOMEG00000010647	cpsf3	52	86.059	Oryzias_melastigma
ENSLBEG00000015018	-	99	69.437	ENSOGAG00000001680	CPSF3	55	69.437	Otolemur_garnettii
ENSLBEG00000015018	-	99	80.161	ENSOARG00000015073	CPSF3	55	80.161	Ovis_aries
ENSLBEG00000015018	-	99	79.625	ENSPPAG00000042457	CPSF3	55	79.625	Pan_paniscus
ENSLBEG00000015018	-	99	80.161	ENSPPRG00000016790	CPSF3	58	80.161	Panthera_pardus
ENSLBEG00000015018	-	99	80.161	ENSPTIG00000003920	CPSF3	59	80.161	Panthera_tigris_altaica
ENSLBEG00000015018	-	99	79.625	ENSPTRG00000011638	CPSF3	55	79.625	Pan_troglodytes
ENSLBEG00000015018	-	99	79.625	ENSPANG00000016798	CPSF3	55	79.625	Papio_anubis
ENSLBEG00000015018	-	99	84.324	ENSPKIG00000023646	cpsf3	58	84.324	Paramormyrops_kingsleyae
ENSLBEG00000015018	-	99	78.933	ENSPSIG00000016144	CPSF3	55	78.933	Pelodiscus_sinensis
ENSLBEG00000015018	-	86	93.082	ENSPMGG00000006141	-	55	93.082	Periophthalmus_magnuspinnatus
ENSLBEG00000015018	-	99	82.065	ENSPMGG00000015311	CPSF3	92	82.065	Periophthalmus_magnuspinnatus
ENSLBEG00000015018	-	99	79.625	ENSPEMG00000017668	Cpsf3	55	79.625	Peromyscus_maniculatus_bairdii
ENSLBEG00000015018	-	99	79.357	ENSPCIG00000009823	CPSF3	56	79.357	Phascolarctos_cinereus
ENSLBEG00000015018	-	99	86.364	ENSPFOG00000015922	cpsf3	55	86.364	Poecilia_formosa
ENSLBEG00000015018	-	99	82.258	ENSPFOG00000010418	-	54	82.258	Poecilia_formosa
ENSLBEG00000015018	-	99	82.258	ENSPLAG00000021300	-	92	82.258	Poecilia_latipinna
ENSLBEG00000015018	-	99	86.364	ENSPLAG00000000882	cpsf3	55	86.364	Poecilia_latipinna
ENSLBEG00000015018	-	60	93.304	ENSPMEG00000021555	CPSF3	88	93.304	Poecilia_mexicana
ENSLBEG00000015018	-	99	86.364	ENSPMEG00000018309	cpsf3	55	86.364	Poecilia_mexicana
ENSLBEG00000015018	-	99	72.207	ENSPREG00000004482	CPSF3	51	72.207	Poecilia_reticulata
ENSLBEG00000015018	-	99	87.027	ENSPREG00000014875	cpsf3	59	87.027	Poecilia_reticulata
ENSLBEG00000015018	-	99	79.357	ENSPPYG00000012666	CPSF3	57	79.357	Pongo_abelii
ENSLBEG00000015018	-	99	79.893	ENSPVAG00000005324	CPSF3	55	79.893	Pteropus_vampyrus
ENSLBEG00000015018	-	99	90.217	ENSPNYG00000004405	cpsf3	59	90.217	Pundamilia_nyererei
ENSLBEG00000015018	-	85	89.274	ENSPNYG00000021047	CPSF3	53	89.274	Pundamilia_nyererei
ENSLBEG00000015018	-	99	82.306	ENSPNAG00000023060	cpsf3	59	82.306	Pygocentrus_nattereri
ENSLBEG00000015018	-	99	79.893	ENSRNOG00000052418	Cpsf3	54	79.893	Rattus_norvegicus
ENSLBEG00000015018	-	99	74.263	ENSRBIG00000041615	CPSF3	56	74.263	Rhinopithecus_bieti
ENSLBEG00000015018	-	99	79.625	ENSRROG00000033792	CPSF3	55	79.625	Rhinopithecus_roxellana
ENSLBEG00000015018	-	99	32.026	YLR277C	YSH1	59	32.026	Saccharomyces_cerevisiae
ENSLBEG00000015018	-	99	73.740	ENSSBOG00000027263	CPSF3	54	73.740	Saimiri_boliviensis_boliviensis
ENSLBEG00000015018	-	99	79.357	ENSSHAG00000007024	CPSF3	55	79.357	Sarcophilus_harrisii
ENSLBEG00000015018	-	99	84.367	ENSSFOG00015002108	cpsf3	59	84.140	Scleropages_formosus
ENSLBEG00000015018	-	99	82.609	ENSSMAG00000020534	CPSF3	54	82.609	Scophthalmus_maximus
ENSLBEG00000015018	-	99	82.527	ENSSDUG00000018498	CPSF3	58	82.210	Seriola_dumerili
ENSLBEG00000015018	-	99	89.600	ENSSDUG00000002828	cpsf3	53	89.600	Seriola_dumerili
ENSLBEG00000015018	-	99	82.703	ENSSLDG00000005234	CPSF3	59	82.703	Seriola_lalandi_dorsalis
ENSLBEG00000015018	-	99	89.333	ENSSLDG00000008469	cpsf3	53	89.333	Seriola_lalandi_dorsalis
ENSLBEG00000015018	-	99	79.088	ENSSPUG00000015525	CPSF3	54	79.088	Sphenodon_punctatus
ENSLBEG00000015018	-	99	82.880	ENSSPAG00000002906	CPSF3	59	82.880	Stegastes_partitus
ENSLBEG00000015018	-	99	89.247	ENSSPAG00000018579	cpsf3	54	89.247	Stegastes_partitus
ENSLBEG00000015018	-	99	80.161	ENSSSCG00000020799	CPSF3	59	80.161	Sus_scrofa
ENSLBEG00000015018	-	99	79.088	ENSTGUG00000013016	CPSF3	55	79.088	Taeniopygia_guttata
ENSLBEG00000015018	-	99	74.387	ENSTRUG00000013905	CPSF3	91	74.387	Takifugu_rubripes
ENSLBEG00000015018	-	99	88.710	ENSTRUG00000007030	cpsf3	90	88.441	Takifugu_rubripes
ENSLBEG00000015018	-	99	80.161	ENSUAMG00000007535	CPSF3	54	80.161	Ursus_americanus
ENSLBEG00000015018	-	99	80.161	ENSUMAG00000003676	CPSF3	54	84.688	Ursus_maritimus
ENSLBEG00000015018	-	99	77.748	ENSVPAG00000008041	CPSF3	59	77.748	Vicugna_pacos
ENSLBEG00000015018	-	99	80.161	ENSVVUG00000002194	CPSF3	55	80.161	Vulpes_vulpes
ENSLBEG00000015018	-	99	78.284	ENSXETG00000008263	cpsf3	54	78.284	Xenopus_tropicalis
ENSLBEG00000015018	-	99	87.634	ENSXCOG00000019695	cpsf3	54	87.634	Xiphophorus_couchianus
ENSLBEG00000015018	-	90	80.531	ENSXCOG00000000957	-	79	80.531	Xiphophorus_couchianus
ENSLBEG00000015018	-	99	82.527	ENSXMAG00000027291	CPSF3	54	82.527	Xiphophorus_maculatus
ENSLBEG00000015018	-	99	86.400	ENSXMAG00000009784	cpsf3	58	86.400	Xiphophorus_maculatus