EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000016163 (Gene tree)
Gene ID: 109983913
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 7856 bases
Position: chrFKLU01000062.1:360253-368108
Accession: 109983913
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000021208	RRM_1	PF00076.22	2.7e-16	1	1
ENSLBEP00000021186	RRM_1	PF00076.22	3e-16	1	1
ENSLBEP00000021140	RRM_1	PF00076.22	3.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000022320	RBM38-202	696	-	ENSLBEP00000021186	231 (aa)	-	-
ENSLBET00000022273	RBM38-201	747	XM_020633857	ENSLBEP00000021140	248 (aa)	XP_020489513	-
ENSLBET00000022343	RBM38-203	663	-	ENSLBEP00000021208	220 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000016163's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000016163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000016163	RBM38	67	72.222	ENSLBEG00000000774	rbm24b	100	62.140
ENSLBEG00000016163	RBM38	100	64.062	ENSLBEG00000018878	rbm38	98	63.745
ENSLBEG00000016163	RBM38	59	79.562	ENSLBEG00000003025	rbm24a	100	62.553
ENSLBEG00000016163	RBM38	55	30.137	ENSLBEG00000027508	hnrnpd	55	30.208

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000016163	RBM38	92	70.320	ENSG00000132819	RBM38	94	86.441	Homo_sapiens
ENSLBEG00000016163	RBM38	100	92.339	ENSAPOG00000009939	-	100	92.339	Acanthochromis_polyacanthus
ENSLBEG00000016163	RBM38	100	64.844	ENSAPOG00000003301	rbm38	98	64.400	Acanthochromis_polyacanthus
ENSLBEG00000016163	RBM38	100	94.372	ENSACIG00000012502	-	100	98.305	Amphilophus_citrinellus
ENSLBEG00000016163	RBM38	100	63.035	ENSACIG00000000010	rbm38	98	62.550	Amphilophus_citrinellus
ENSLBEG00000016163	RBM38	97	92.116	ENSAOCG00000012559	RBM38	100	92.116	Amphiprion_ocellaris
ENSLBEG00000016163	RBM38	100	65.234	ENSAOCG00000013497	-	98	64.800	Amphiprion_ocellaris
ENSLBEG00000016163	RBM38	100	65.234	ENSAPEG00000013137	rbm38	98	64.800	Amphiprion_percula
ENSLBEG00000016163	RBM38	100	91.935	ENSAPEG00000023581	-	100	91.935	Amphiprion_percula
ENSLBEG00000016163	RBM38	100	92.742	ENSATEG00000016710	-	100	92.742	Anabas_testudineus
ENSLBEG00000016163	RBM38	99	64.255	ENSATEG00000016366	rbm38	99	64.255	Anabas_testudineus
ENSLBEG00000016163	RBM38	94	69.333	ENSACAG00000016238	RBM38	95	64.831	Anolis_carolinensis
ENSLBEG00000016163	RBM38	92	71.233	ENSANAG00000031959	RBM38	78	93.617	Aotus_nancymaae
ENSLBEG00000016163	RBM38	100	89.919	ENSACLG00000019514	-	100	89.919	Astatotilapia_calliptera
ENSLBEG00000016163	RBM38	96	64.629	ENSAMXG00000038120	rbm38	97	63.755	Astyanax_mexicanus
ENSLBEG00000016163	RBM38	100	78.151	ENSAMXG00000015601	-	100	77.311	Astyanax_mexicanus
ENSLBEG00000016163	RBM38	92	69.725	ENSBTAG00000008105	RBM38	89	69.585	Bos_taurus
ENSLBEG00000016163	RBM38	57	65.116	WBGene00006321	sup-12	73	72.727	Caenorhabditis_elegans
ENSLBEG00000016163	RBM38	92	71.233	ENSCJAG00000019139	RBM38	78	93.617	Callithrix_jacchus
ENSLBEG00000016163	RBM38	92	71.101	ENSCAFG00020021943	RBM38	89	70.183	Canis_lupus_dingo
ENSLBEG00000016163	RBM38	97	63.927	ENSCHIG00000002609	RBM38	89	68.664	Capra_hircus
ENSLBEG00000016163	RBM38	92	69.406	ENSCPOG00000012781	RBM38	89	68.807	Cavia_porcellus
ENSLBEG00000016163	RBM38	92	71.233	ENSCCAG00000036872	RBM38	78	93.617	Cebus_capucinus
ENSLBEG00000016163	RBM38	92	69.863	ENSCATG00000032133	RBM38	78	93.617	Cercocebus_atys
ENSLBEG00000016163	RBM38	92	68.950	ENSCLAG00000005906	RBM38	92	67.890	Chinchilla_lanigera
ENSLBEG00000016163	RBM38	92	69.863	ENSCSAG00000015503	RBM38	89	69.266	Chlorocebus_sabaeus
ENSLBEG00000016163	RBM38	94	71.300	ENSCPBG00000024059	RBM38	100	68.468	Chrysemys_picta_bellii
ENSLBEG00000016163	RBM38	97	52.804	ENSCANG00000030105	-	80	51.802	Colobus_angolensis_palliatus
ENSLBEG00000016163	RBM38	97	63.303	ENSCGRG00001012928	Rbm38	89	68.349	Cricetulus_griseus_chok1gshd
ENSLBEG00000016163	RBM38	78	64.130	ENSCSEG00000020943	rbm38	61	65.946	Cynoglossus_semilaevis
ENSLBEG00000016163	RBM38	100	87.903	ENSCSEG00000004701	-	100	87.903	Cynoglossus_semilaevis
ENSLBEG00000016163	RBM38	99	59.438	ENSCVAG00000015952	rbm38	98	60.870	Cyprinodon_variegatus
ENSLBEG00000016163	RBM38	100	85.484	ENSCVAG00000005472	-	100	85.484	Cyprinodon_variegatus
ENSLBEG00000016163	RBM38	99	72.199	ENSDARG00000058818	rbm38	100	71.784	Danio_rerio
ENSLBEG00000016163	RBM38	92	69.907	ENSDNOG00000032004	RBM38	98	68.837	Dasypus_novemcinctus
ENSLBEG00000016163	RBM38	92	68.807	ENSECAG00000007700	RBM38	89	68.203	Equus_caballus
ENSLBEG00000016163	RBM38	97	63.761	ENSEEUG00000013489	RBM38	89	68.807	Erinaceus_europaeus
ENSLBEG00000016163	RBM38	85	71.574	ENSELUG00000000585	-	98	62.882	Esox_lucius
ENSLBEG00000016163	RBM38	100	82.731	ENSELUG00000005849	-	100	81.124	Esox_lucius
ENSLBEG00000016163	RBM38	92	70.183	ENSFCAG00000042916	RBM38	84	86.538	Felis_catus
ENSLBEG00000016163	RBM38	77	75.138	ENSFALG00000010805	RBM38	92	70.556	Ficedula_albicollis
ENSLBEG00000016163	RBM38	100	61.868	ENSFHEG00000017748	rbm38	98	61.868	Fundulus_heteroclitus
ENSLBEG00000016163	RBM38	100	84.416	ENSFHEG00000006160	-	100	84.416	Fundulus_heteroclitus
ENSLBEG00000016163	RBM38	79	88.108	ENSGMOG00000016655	-	99	85.946	Gadus_morhua
ENSLBEG00000016163	RBM38	94	70.536	ENSGALG00000026081	RBM38	100	68.161	Gallus_gallus
ENSLBEG00000016163	RBM38	94	89.401	ENSGACG00000009873	-	100	89.401	Gasterosteus_aculeatus
ENSLBEG00000016163	RBM38	94	71.233	ENSGACG00000015224	rbm38	100	71.233	Gasterosteus_aculeatus
ENSLBEG00000016163	RBM38	94	70.852	ENSGAGG00000001187	RBM38	100	68.468	Gopherus_agassizii
ENSLBEG00000016163	RBM38	100	93.074	ENSHBUG00000011778	-	100	93.074	Haplochromis_burtoni
ENSLBEG00000016163	RBM38	100	63.137	ENSHBUG00000012058	rbm38	98	62.151	Haplochromis_burtoni
ENSLBEG00000016163	RBM38	92	66.514	ENSHGLG00000015077	RBM38	89	68.349	Heterocephalus_glaber_female
ENSLBEG00000016163	RBM38	87	92.500	ENSHCOG00000005622	-	58	92.500	Hippocampus_comes
ENSLBEG00000016163	RBM38	90	50.893	ENSHCOG00000019040	rbm38	78	54.082	Hippocampus_comes
ENSLBEG00000016163	RBM38	100	71.667	ENSIPUG00000019349	-	100	70.833	Ictalurus_punctatus
ENSLBEG00000016163	RBM38	97	58.120	ENSKMAG00000012402	rbm38	99	59.244	Kryptolebias_marmoratus
ENSLBEG00000016163	RBM38	100	78.723	ENSLOCG00000003456	rbm38	100	77.872	Lepisosteus_oculatus
ENSLBEG00000016163	RBM38	92	69.863	ENSMFAG00000043808	RBM38	78	93.617	Macaca_fascicularis
ENSLBEG00000016163	RBM38	92	69.863	ENSMMUG00000031391	RBM38	78	93.617	Macaca_mulatta
ENSLBEG00000016163	RBM38	92	69.863	ENSMNEG00000034683	RBM38	78	93.617	Macaca_nemestrina
ENSLBEG00000016163	RBM38	50	66.972	ENSMLEG00000043261	-	90	73.874	Mandrillus_leucophaeus
ENSLBEG00000016163	RBM38	100	65.759	ENSMAMG00000024135	rbm38	98	64.143	Mastacembelus_armatus
ENSLBEG00000016163	RBM38	100	90.726	ENSMAMG00000020499	RBM38	100	90.726	Mastacembelus_armatus
ENSLBEG00000016163	RBM38	100	93.074	ENSMZEG00005000849	-	100	93.074	Maylandia_zebra
ENSLBEG00000016163	RBM38	100	63.137	ENSMZEG00005026036	rbm38	98	62.151	Maylandia_zebra
ENSLBEG00000016163	RBM38	97	65.138	ENSMAUG00000021211	Rbm38	89	69.266	Mesocricetus_auratus
ENSLBEG00000016163	RBM38	92	69.863	ENSMICG00000038011	RBM38	98	68.807	Microcebus_murinus
ENSLBEG00000016163	RBM38	97	64.679	ENSMOCG00000008715	Rbm38	94	66.522	Microtus_ochrogaster
ENSLBEG00000016163	RBM38	100	92.339	ENSMMOG00000020051	-	100	92.339	Mola_mola
ENSLBEG00000016163	RBM38	94	68.468	ENSMODG00000016458	RBM38	92	65.929	Monodelphis_domestica
ENSLBEG00000016163	RBM38	100	57.940	ENSMALG00000022327	rbm38	98	58.264	Monopterus_albus
ENSLBEG00000016163	RBM38	82	96.296	ENSMALG00000004680	RBM38	72	96.296	Monopterus_albus
ENSLBEG00000016163	RBM38	92	66.514	MGP_CAROLIEiJ_G0024745	Rbm38	94	66.522	Mus_caroli
ENSLBEG00000016163	RBM38	92	66.514	ENSMUSG00000027510	Rbm38	94	66.522	Mus_musculus
ENSLBEG00000016163	RBM38	92	66.055	MGP_PahariEiJ_G0026186	Rbm38	94	66.087	Mus_pahari
ENSLBEG00000016163	RBM38	92	66.514	MGP_SPRETEiJ_G0025665	Rbm38	94	66.522	Mus_spretus
ENSLBEG00000016163	RBM38	76	74.725	ENSMPUG00000006518	RBM38	89	73.626	Mustela_putorius_furo
ENSLBEG00000016163	RBM38	92	69.266	ENSMLUG00000011140	RBM38	98	68.203	Myotis_lucifugus
ENSLBEG00000016163	RBM38	100	90.323	ENSNBRG00000022545	-	100	90.323	Neolamprologus_brichardi
ENSLBEG00000016163	RBM38	100	63.556	ENSNBRG00000022685	rbm38	98	62.550	Neolamprologus_brichardi
ENSLBEG00000016163	RBM38	51	78.814	ENSMEUG00000005475	-	87	78.814	Notamacropus_eugenii
ENSLBEG00000016163	RBM38	92	69.863	ENSODEG00000007980	RBM38	89	69.266	Octodon_degus
ENSLBEG00000016163	RBM38	99	90.283	ENSONIG00000020324	-	100	90.283	Oreochromis_niloticus
ENSLBEG00000016163	RBM38	99	63.386	ENSONIG00000017073	rbm38	100	62.400	Oreochromis_niloticus
ENSLBEG00000016163	RBM38	91	70.698	ENSOANG00000009259	RBM38	81	69.159	Ornithorhynchus_anatinus
ENSLBEG00000016163	RBM38	100	86.000	ENSORLG00000027180	-	100	87.600	Oryzias_latipes
ENSLBEG00000016163	RBM38	100	58.333	ENSORLG00000012154	rbm38	98	58.333	Oryzias_latipes
ENSLBEG00000016163	RBM38	100	86.000	ENSORLG00020020751	-	100	87.600	Oryzias_latipes_hni
ENSLBEG00000016163	RBM38	100	58.730	ENSORLG00020017871	rbm38	98	58.730	Oryzias_latipes_hni
ENSLBEG00000016163	RBM38	100	87.550	ENSORLG00015017040	-	100	87.550	Oryzias_latipes_hsok
ENSLBEG00000016163	RBM38	100	58.333	ENSORLG00015012606	rbm38	98	58.730	Oryzias_latipes_hsok
ENSLBEG00000016163	RBM38	99	60.000	ENSOMEG00000006805	rbm38	98	59.524	Oryzias_melastigma
ENSLBEG00000016163	RBM38	100	89.113	ENSOMEG00000023912	-	100	89.113	Oryzias_melastigma
ENSLBEG00000016163	RBM38	92	70.776	ENSOGAG00000029136	RBM38	88	70.183	Otolemur_garnettii
ENSLBEG00000016163	RBM38	92	70.183	ENSPPRG00000009507	RBM38	84	86.538	Panthera_pardus
ENSLBEG00000016163	RBM38	83	71.357	ENSPTRG00000013661	RBM38	78	93.617	Pan_troglodytes
ENSLBEG00000016163	RBM38	52	85.833	ENSPTRG00000045845	-	66	85.833	Pan_troglodytes
ENSLBEG00000016163	RBM38	92	69.863	ENSPANG00000020919	-	78	93.617	Papio_anubis
ENSLBEG00000016163	RBM38	97	57.143	ENSPANG00000033127	-	91	56.682	Papio_anubis
ENSLBEG00000016163	RBM38	100	75.949	ENSPKIG00000018122	-	97	89.474	Paramormyrops_kingsleyae
ENSLBEG00000016163	RBM38	100	70.683	ENSPKIG00000025417	rbm38	100	70.492	Paramormyrops_kingsleyae
ENSLBEG00000016163	RBM38	96	68.996	ENSPSIG00000011649	RBM38	94	66.667	Pelodiscus_sinensis
ENSLBEG00000016163	RBM38	100	82.400	ENSPMGG00000017094	-	100	83.200	Periophthalmus_magnuspinnatus
ENSLBEG00000016163	RBM38	99	62.745	ENSPMGG00000011343	rbm38	98	62.055	Periophthalmus_magnuspinnatus
ENSLBEG00000016163	RBM38	100	62.996	ENSPCIG00000013648	RBM38	92	65.044	Phascolarctos_cinereus
ENSLBEG00000016163	RBM38	100	58.140	ENSPFOG00000011658	rbm38	98	57.692	Poecilia_formosa
ENSLBEG00000016163	RBM38	100	84.000	ENSPLAG00000002500	-	100	83.200	Poecilia_latipinna
ENSLBEG00000016163	RBM38	100	58.824	ENSPLAG00000005218	rbm38	98	57.692	Poecilia_latipinna
ENSLBEG00000016163	RBM38	100	57.480	ENSPMEG00000015770	rbm38	98	57.692	Poecilia_mexicana
ENSLBEG00000016163	RBM38	100	58.140	ENSPREG00000007398	rbm38	98	57.692	Poecilia_reticulata
ENSLBEG00000016163	RBM38	92	69.406	ENSPCOG00000026201	RBM38	77	93.617	Propithecus_coquereli
ENSLBEG00000016163	RBM38	68	94.231	ENSPVAG00000006457	RBM38	66	85.484	Pteropus_vampyrus
ENSLBEG00000016163	RBM38	100	89.919	ENSPNYG00000019727	-	100	97.458	Pundamilia_nyererei
ENSLBEG00000016163	RBM38	97	64.783	ENSPNYG00000021373	rbm38	98	61.753	Pundamilia_nyererei
ENSLBEG00000016163	RBM38	96	70.870	ENSPNAG00000010596	rbm38	97	70.000	Pygocentrus_nattereri
ENSLBEG00000016163	RBM38	100	76.891	ENSPNAG00000015123	-	98	82.963	Pygocentrus_nattereri
ENSLBEG00000016163	RBM38	97	66.667	ENSRNOG00000006420	Rbm38	94	66.087	Rattus_norvegicus
ENSLBEG00000016163	RBM38	100	57.273	ENSRROG00000036388	-	92	55.310	Rhinopithecus_roxellana
ENSLBEG00000016163	RBM38	92	70.776	ENSSBOG00000031053	RBM38	88	93.617	Saimiri_boliviensis_boliviensis
ENSLBEG00000016163	RBM38	100	71.074	ENSSFOG00015004453	rbm38	100	74.274	Scleropages_formosus
ENSLBEG00000016163	RBM38	100	66.148	ENSSDUG00000022611	rbm38	98	65.737	Seriola_dumerili
ENSLBEG00000016163	RBM38	100	91.532	ENSSDUG00000021082	RBM38	100	91.532	Seriola_dumerili
ENSLBEG00000016163	RBM38	100	66.148	ENSSLDG00000010845	rbm38	98	65.737	Seriola_lalandi_dorsalis
ENSLBEG00000016163	RBM38	100	92.339	ENSSLDG00000011778	RBM38	100	92.339	Seriola_lalandi_dorsalis
ENSLBEG00000016163	RBM38	100	92.742	ENSSPAG00000020989	RBM38	100	92.742	Stegastes_partitus
ENSLBEG00000016163	RBM38	100	64.202	ENSSPAG00000011113	rbm38	98	63.745	Stegastes_partitus
ENSLBEG00000016163	RBM38	92	69.725	ENSSSCG00000007504	RBM38	89	69.124	Sus_scrofa
ENSLBEG00000016163	RBM38	100	87.149	ENSTRUG00000019869	-	100	87.149	Takifugu_rubripes
ENSLBEG00000016163	RBM38	98	63.786	ENSTRUG00000024954	rbm38	97	64.198	Takifugu_rubripes
ENSLBEG00000016163	RBM38	94	90.950	ENSTNIG00000007093	-	100	90.950	Tetraodon_nigroviridis
ENSLBEG00000016163	RBM38	92	70.776	ENSUAMG00000019780	RBM38	89	69.863	Ursus_americanus
ENSLBEG00000016163	RBM38	92	71.101	ENSVVUG00000017246	RBM38	89	70.183	Vulpes_vulpes
ENSLBEG00000016163	RBM38	100	61.062	ENSXETG00000011268	rbm38	99	64.000	Xenopus_tropicalis
ENSLBEG00000016163	RBM38	75	76.536	ENSXCOG00000017324	-	68	83.333	Xiphophorus_couchianus
ENSLBEG00000016163	RBM38	100	59.761	ENSXMAG00000023662	rbm38	98	61.868	Xiphophorus_maculatus