EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000016394 (Gene tree)
Gene ID: 110001790
Gene Symbol: -
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 18976 bases
Position: chrFKLU01000854.1:47536-66511
Accession: 110001790
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000021387	Upf2	PF04050.14	1.1e-32	1	1
ENSLBEP00000021430	Upf2	PF04050.14	1.2e-32	1	1
ENSLBEP00000021430	MIF4G	PF02854.19	9.9e-76	1	3
ENSLBEP00000021430	MIF4G	PF02854.19	9.9e-76	2	3
ENSLBEP00000021430	MIF4G	PF02854.19	9.9e-76	3	3
ENSLBEP00000021387	MIF4G	PF02854.19	1.2e-75	1	3
ENSLBEP00000021387	MIF4G	PF02854.19	1.2e-75	2	3
ENSLBEP00000021387	MIF4G	PF02854.19	1.2e-75	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000022582	-	3672	-	ENSLBEP00000021430	1223 (aa)	-	-
ENSLBET00000022537	-	7004	XM_020657300	ENSLBEP00000021387	1289 (aa)	XP_020512956	UPI0009B34591

Gene Model

Click here to download ENSLBEG00000016394's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000016394's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000016394	-	83	97.527	ENSLBEG00000000728	-	94	96.869

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000016394	-	99	82.659	ENSG00000151461	UPF2	100	82.609	Homo_sapiens
ENSLBEG00000016394	-	100	91.143	ENSAPOG00000015837	UPF2	100	91.707	Acanthochromis_polyacanthus
ENSLBEG00000016394	-	99	83.424	ENSAMEG00000004586	UPF2	100	83.372	Ailuropoda_melanoleuca
ENSLBEG00000016394	-	99	95.455	ENSACIG00000018078	UPF2	100	95.455	Amphilophus_citrinellus
ENSLBEG00000016394	-	99	95.462	ENSAOCG00000016766	UPF2	100	95.383	Amphiprion_ocellaris
ENSLBEG00000016394	-	99	95.540	ENSAPEG00000019084	UPF2	100	95.462	Amphiprion_percula
ENSLBEG00000016394	-	99	95.622	ENSATEG00000021677	UPF2	99	95.622	Anabas_testudineus
ENSLBEG00000016394	-	100	79.022	ENSAPLG00000010287	UPF2	90	84.609	Anas_platyrhynchos
ENSLBEG00000016394	-	99	82.710	ENSACAG00000009259	UPF2	100	82.659	Anolis_carolinensis
ENSLBEG00000016394	-	90	79.555	ENSANAG00000028451	UPF2	93	79.555	Aotus_nancymaae
ENSLBEG00000016394	-	99	95.305	ENSACLG00000012696	UPF2	100	95.305	Astatotilapia_calliptera
ENSLBEG00000016394	-	99	88.984	ENSAMXG00000013700	UPF2	99	87.266	Astyanax_mexicanus
ENSLBEG00000016394	-	99	83.191	ENSBTAG00000000288	UPF2	99	81.250	Bos_taurus
ENSLBEG00000016394	-	99	82.490	ENSCJAG00000020685	UPF2	100	80.808	Callithrix_jacchus
ENSLBEG00000016394	-	99	83.502	ENSCAFG00000004839	UPF2	100	83.450	Canis_familiaris
ENSLBEG00000016394	-	100	84.472	ENSCAFG00020005882	UPF2	100	84.172	Canis_lupus_dingo
ENSLBEG00000016394	-	99	83.191	ENSCHIG00000020359	UPF2	99	81.250	Capra_hircus
ENSLBEG00000016394	-	99	82.879	ENSTSYG00000000935	UPF2	100	82.828	Carlito_syrichta
ENSLBEG00000016394	-	91	75.064	ENSCAPG00000016658	UPF2	94	74.914	Cavia_aperea
ENSLBEG00000016394	-	97	81.066	ENSCPOG00000008809	UPF2	92	83.504	Cavia_porcellus
ENSLBEG00000016394	-	100	78.631	ENSCCAG00000035991	UPF2	100	74.747	Cebus_capucinus
ENSLBEG00000016394	-	99	82.815	ENSCATG00000032679	UPF2	100	82.764	Cercocebus_atys
ENSLBEG00000016394	-	99	81.931	ENSCLAG00000011434	UPF2	100	81.882	Chinchilla_lanigera
ENSLBEG00000016394	-	99	82.815	ENSCSAG00000013372	UPF2	100	82.764	Chlorocebus_sabaeus
ENSLBEG00000016394	-	81	89.135	ENSCHOG00000000422	UPF2	81	89.135	Choloepus_hoffmanni
ENSLBEG00000016394	-	99	81.577	ENSCPBG00000027823	UPF2	92	85.812	Chrysemys_picta_bellii
ENSLBEG00000016394	-	78	49.213	ENSCSAVG00000007772	-	99	49.311	Ciona_savignyi
ENSLBEG00000016394	-	100	77.437	ENSCANG00000040396	UPF2	100	77.855	Colobus_angolensis_palliatus
ENSLBEG00000016394	-	99	82.866	ENSCGRG00001019347	Upf2	100	83.048	Cricetulus_griseus_chok1gshd
ENSLBEG00000016394	-	99	82.866	ENSCGRG00000017993	Upf2	100	83.048	Cricetulus_griseus_crigri
ENSLBEG00000016394	-	99	87.099	ENSCSEG00000003520	UPF2	99	86.458	Cynoglossus_semilaevis
ENSLBEG00000016394	-	98	92.981	ENSCVAG00000006167	UPF2	100	92.666	Cyprinodon_variegatus
ENSLBEG00000016394	-	99	83.113	ENSDNOG00000018160	UPF2	100	83.061	Dasypus_novemcinctus
ENSLBEG00000016394	-	99	82.646	ENSDORG00000002478	Upf2	100	82.828	Dipodomys_ordii
ENSLBEG00000016394	-	89	36.493	FBgn0029992	Upf2	90	38.840	Drosophila_melanogaster
ENSLBEG00000016394	-	72	91.971	ENSETEG00000011583	-	62	91.667	Echinops_telfairi
ENSLBEG00000016394	-	67	70.861	ENSEBUG00000012448	-	93	69.058	Eptatretus_burgeri
ENSLBEG00000016394	-	99	82.555	ENSEASG00005019274	UPF2	100	82.619	Equus_asinus_asinus
ENSLBEG00000016394	-	99	82.555	ENSECAG00000017022	UPF2	100	82.504	Equus_caballus
ENSLBEG00000016394	-	81	75.312	ENSEEUG00000007819	UPF2	74	75.851	Erinaceus_europaeus
ENSLBEG00000016394	-	99	88.456	ENSELUG00000012014	UPF2	100	88.534	Esox_lucius
ENSLBEG00000016394	-	100	85.635	ENSFCAG00000005785	UPF2	100	83.294	Felis_catus
ENSLBEG00000016394	-	99	83.217	ENSFALG00000001889	UPF2	98	83.140	Ficedula_albicollis
ENSLBEG00000016394	-	99	81.620	ENSFDAG00000014348	UPF2	100	81.776	Fukomys_damarensis
ENSLBEG00000016394	-	98	93.060	ENSFHEG00000009826	UPF2	100	92.271	Fundulus_heteroclitus
ENSLBEG00000016394	-	90	89.042	ENSGMOG00000005557	UPF2	100	87.782	Gadus_morhua
ENSLBEG00000016394	-	99	83.813	ENSGALG00000033772	UPF2	100	83.528	Gallus_gallus
ENSLBEG00000016394	-	99	92.488	ENSGAFG00000020867	UPF2	100	91.706	Gambusia_affinis
ENSLBEG00000016394	-	99	93.443	ENSGACG00000001080	UPF2	100	93.677	Gasterosteus_aculeatus
ENSLBEG00000016394	-	99	82.568	ENSGAGG00000002700	UPF2	99	78.834	Gopherus_agassizii
ENSLBEG00000016394	-	99	82.659	ENSGGOG00000001479	UPF2	100	82.609	Gorilla_gorilla
ENSLBEG00000016394	-	99	95.455	ENSHBUG00000004249	UPF2	100	95.455	Haplochromis_burtoni
ENSLBEG00000016394	-	99	72.933	ENSHGLG00000003822	-	99	72.933	Heterocephalus_glaber_female
ENSLBEG00000016394	-	99	81.854	ENSHGLG00000015176	-	100	81.804	Heterocephalus_glaber_female
ENSLBEG00000016394	-	99	79.407	ENSHGLG00100010036	UPF2	89	85.053	Heterocephalus_glaber_male
ENSLBEG00000016394	-	100	90.263	ENSHCOG00000004025	UPF2	100	90.185	Hippocampus_comes
ENSLBEG00000016394	-	99	87.695	ENSIPUG00000015524	UPF2	100	87.295	Ictalurus_punctatus
ENSLBEG00000016394	-	99	82.957	ENSSTOG00000013075	UPF2	100	83.139	Ictidomys_tridecemlineatus
ENSLBEG00000016394	-	99	79.517	ENSJJAG00000004913	Upf2	100	80.000	Jaculus_jaculus
ENSLBEG00000016394	-	98	93.770	ENSKMAG00000001071	UPF2	100	93.770	Kryptolebias_marmoratus
ENSLBEG00000016394	-	99	78.431	ENSLACG00000015945	UPF2	93	84.530	Latimeria_chalumnae
ENSLBEG00000016394	-	98	88.208	ENSLOCG00000015698	UPF2	100	87.893	Lepisosteus_oculatus
ENSLBEG00000016394	-	99	82.815	ENSMFAG00000043865	UPF2	100	82.764	Macaca_fascicularis
ENSLBEG00000016394	-	99	82.815	ENSMMUG00000008241	UPF2	100	82.764	Macaca_mulatta
ENSLBEG00000016394	-	83	83.268	ENSMNEG00000008062	UPF2	99	83.578	Macaca_nemestrina
ENSLBEG00000016394	-	100	79.701	ENSMLEG00000036120	UPF2	100	80.560	Mandrillus_leucophaeus
ENSLBEG00000016394	-	99	93.818	ENSMAMG00000018276	UPF2	100	95.227	Mastacembelus_armatus
ENSLBEG00000016394	-	99	95.305	ENSMZEG00005021595	UPF2	100	95.305	Maylandia_zebra
ENSLBEG00000016394	-	99	83.503	ENSMGAG00000004573	UPF2	91	85.861	Meleagris_gallopavo
ENSLBEG00000016394	-	99	80.841	ENSMAUG00000016512	Upf2	100	81.026	Mesocricetus_auratus
ENSLBEG00000016394	-	100	84.228	ENSMICG00000001716	UPF2	100	83.766	Microcebus_murinus
ENSLBEG00000016394	-	99	81.839	ENSMOCG00000008263	Upf2	100	81.946	Microtus_ochrogaster
ENSLBEG00000016394	-	100	93.457	ENSMMOG00000006528	UPF2	100	93.296	Mola_mola
ENSLBEG00000016394	-	99	80.919	ENSMODG00000016794	UPF2	99	81.001	Monodelphis_domestica
ENSLBEG00000016394	-	99	93.966	ENSMALG00000002663	UPF2	100	93.417	Monopterus_albus
ENSLBEG00000016394	-	99	82.632	MGP_CAROLIEiJ_G0023157	Upf2	99	85.269	Mus_caroli
ENSLBEG00000016394	-	99	82.788	ENSMUSG00000043241	Upf2	100	82.970	Mus_musculus
ENSLBEG00000016394	-	99	82.788	MGP_PahariEiJ_G0019217	Upf2	100	83.895	Mus_pahari
ENSLBEG00000016394	-	99	82.944	MGP_SPRETEiJ_G0024075	Upf2	100	83.895	Mus_spretus
ENSLBEG00000016394	-	99	83.502	ENSMPUG00000001064	UPF2	100	83.450	Mustela_putorius_furo
ENSLBEG00000016394	-	99	82.646	ENSMLUG00000000228	UPF2	100	82.700	Myotis_lucifugus
ENSLBEG00000016394	-	99	95.462	ENSNBRG00000013629	UPF2	100	95.462	Neolamprologus_brichardi
ENSLBEG00000016394	-	99	82.737	ENSNLEG00000012058	UPF2	100	82.686	Nomascus_leucogenys
ENSLBEG00000016394	-	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSLBEG00000016394	-	99	81.839	ENSODEG00000001290	UPF2	100	81.712	Octodon_degus
ENSLBEG00000016394	-	99	95.383	ENSONIG00000017991	UPF2	100	95.383	Oreochromis_niloticus
ENSLBEG00000016394	-	99	81.910	ENSOCUG00000006230	UPF2	100	82.016	Oryctolagus_cuniculus
ENSLBEG00000016394	-	99	91.556	ENSORLG00000017189	UPF2	100	92.103	Oryzias_latipes
ENSLBEG00000016394	-	99	91.634	ENSORLG00020005969	UPF2	100	92.181	Oryzias_latipes_hni
ENSLBEG00000016394	-	99	91.634	ENSORLG00015005713	UPF2	100	92.181	Oryzias_latipes_hsok
ENSLBEG00000016394	-	99	88.950	ENSOMEG00000023420	UPF2	98	88.871	Oryzias_melastigma
ENSLBEG00000016394	-	99	83.268	ENSOGAG00000005796	UPF2	100	82.751	Otolemur_garnettii
ENSLBEG00000016394	-	99	83.061	ENSOARG00000014587	UPF2	99	81.123	Ovis_aries
ENSLBEG00000016394	-	99	80.156	ENSPPAG00000037953	UPF2	100	79.938	Pan_paniscus
ENSLBEG00000016394	-	99	83.346	ENSPPRG00000000690	UPF2	100	83.294	Panthera_pardus
ENSLBEG00000016394	-	99	83.346	ENSPTIG00000008867	UPF2	100	83.294	Panthera_tigris_altaica
ENSLBEG00000016394	-	99	82.659	ENSPTRG00000002291	UPF2	100	82.609	Pan_troglodytes
ENSLBEG00000016394	-	99	82.815	ENSPANG00000023399	UPF2	100	82.764	Papio_anubis
ENSLBEG00000016394	-	99	87.617	ENSPKIG00000025502	UPF2	100	86.293	Paramormyrops_kingsleyae
ENSLBEG00000016394	-	62	81.842	ENSPSIG00000015158	UPF2	95	81.711	Pelodiscus_sinensis
ENSLBEG00000016394	-	99	90.439	ENSPMGG00000005259	UPF2	100	90.439	Periophthalmus_magnuspinnatus
ENSLBEG00000016394	-	93	76.724	ENSPEMG00000015731	Upf2	99	76.724	Peromyscus_maniculatus_bairdii
ENSLBEG00000016394	-	99	82.788	ENSPCIG00000006656	UPF2	91	85.410	Phascolarctos_cinereus
ENSLBEG00000016394	-	99	92.879	ENSPFOG00000017118	UPF2	100	92.097	Poecilia_formosa
ENSLBEG00000016394	-	99	92.801	ENSPLAG00000005094	UPF2	100	92.019	Poecilia_latipinna
ENSLBEG00000016394	-	99	92.801	ENSPMEG00000017009	UPF2	100	92.019	Poecilia_mexicana
ENSLBEG00000016394	-	99	90.909	ENSPREG00000021880	UPF2	100	90.909	Poecilia_reticulata
ENSLBEG00000016394	-	65	84.970	ENSPPYG00000002089	-	100	84.888	Pongo_abelii
ENSLBEG00000016394	-	100	73.877	ENSPCAG00000000684	UPF2	100	70.785	Procavia_capensis
ENSLBEG00000016394	-	100	81.979	ENSPCOG00000021656	UPF2	100	81.245	Propithecus_coquereli
ENSLBEG00000016394	-	99	76.516	ENSPVAG00000017286	UPF2	100	76.475	Pteropus_vampyrus
ENSLBEG00000016394	-	99	92.868	ENSPNYG00000017096	UPF2	100	92.868	Pundamilia_nyererei
ENSLBEG00000016394	-	99	88.707	ENSPNAG00000009357	UPF2	100	88.707	Pygocentrus_nattereri
ENSLBEG00000016394	-	99	78.866	ENSRNOG00000023593	Upf2	100	94.444	Rattus_norvegicus
ENSLBEG00000016394	-	99	81.606	ENSRBIG00000037780	UPF2	100	79.673	Rhinopithecus_bieti
ENSLBEG00000016394	-	99	82.582	ENSRROG00000043547	UPF2	100	82.686	Rhinopithecus_roxellana
ENSLBEG00000016394	-	99	82.335	ENSSBOG00000020012	UPF2	100	80.808	Saimiri_boliviensis_boliviensis
ENSLBEG00000016394	-	99	86.739	ENSSFOG00015023788	upf2	100	86.271	Scleropages_formosus
ENSLBEG00000016394	-	89	92.028	ENSSMAG00000007637	UPF2	100	92.081	Scophthalmus_maximus
ENSLBEG00000016394	-	100	95.606	ENSSDUG00000017244	UPF2	100	95.606	Seriola_dumerili
ENSLBEG00000016394	-	100	94.835	ENSSLDG00000016866	UPF2	100	94.835	Seriola_lalandi_dorsalis
ENSLBEG00000016394	-	99	81.924	ENSSARG00000008615	UPF2	91	84.099	Sorex_araneus
ENSLBEG00000016394	-	100	81.144	ENSSPUG00000014544	UPF2	99	81.014	Sphenodon_punctatus
ENSLBEG00000016394	-	68	85.029	ENSSSCG00000011117	-	99	84.983	Sus_scrofa
ENSLBEG00000016394	-	99	83.294	ENSTGUG00000002163	-	100	83.242	Taeniopygia_guttata
ENSLBEG00000016394	-	100	92.940	ENSTRUG00000007519	UPF2	100	92.940	Takifugu_rubripes
ENSLBEG00000016394	-	99	89.531	ENSTNIG00000004453	UPF2	95	95.477	Tetraodon_nigroviridis
ENSLBEG00000016394	-	92	74.456	ENSTBEG00000012679	UPF2	93	75.251	Tupaia_belangeri
ENSLBEG00000016394	-	99	81.931	ENSTTRG00000016388	UPF2	100	81.882	Tursiops_truncatus
ENSLBEG00000016394	-	91	94.382	ENSUAMG00000023560	UPF2	99	85.135	Ursus_americanus
ENSLBEG00000016394	-	99	83.424	ENSUMAG00000012953	UPF2	87	85.751	Ursus_maritimus
ENSLBEG00000016394	-	86	96.774	ENSVPAG00000006763	UPF2	77	96.774	Vicugna_pacos
ENSLBEG00000016394	-	99	83.502	ENSVVUG00000006166	UPF2	100	83.450	Vulpes_vulpes
ENSLBEG00000016394	-	99	78.401	ENSXETG00000033103	UPF2	91	83.863	Xenopus_tropicalis
ENSLBEG00000016394	-	99	92.712	ENSXCOG00000011604	UPF2	100	91.928	Xiphophorus_couchianus
ENSLBEG00000016394	-	99	92.879	ENSXMAG00000017209	UPF2	100	92.097	Xiphophorus_maculatus