EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000016427 (Gene tree)
Gene ID: -
Gene Symbol: lsm14b
Alias: zRAP55|zgc:55673
Full Name: LSM family member 14B
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 4029 bases
Position: chrFKLU01000062.1:418362-422390
Accession: ZDB-GENE-040426-779
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000021388	SM-ATX	PF14438.6	2.8e-09	1	1
ENSLBEP00000021388	LSM14	PF12701.7	2.9e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000022539	-	432	-	ENSLBEP00000021388	143 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000016427's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000016427's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000016427	lsm14b	69	68.367	ENSLBEG00000007971	-	94	68.367
ENSLBEG00000016427	lsm14b	97	60.000	ENSLBEG00000010487	lsm14aa	84	75.510

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000016427	lsm14b	97	75.177	ENSG00000149657	LSM14B	63	75.177	Homo_sapiens
ENSLBEG00000016427	lsm14b	67	62.500	ENSAPOG00000009997	-	89	62.500	Acanthochromis_polyacanthus
ENSLBEG00000016427	lsm14b	66	67.368	ENSACIG00000003134	-	77	67.368	Amphilophus_citrinellus
ENSLBEG00000016427	lsm14b	66	65.263	ENSAPEG00000013779	-	94	65.263	Amphiprion_percula
ENSLBEG00000016427	lsm14b	57	73.171	ENSATEG00000015882	-	93	73.171	Anabas_testudineus
ENSLBEG00000016427	lsm14b	74	57.143	ENSBTAG00000053538	-	50	57.143	Bos_taurus
ENSLBEG00000016427	lsm14b	69	71.569	ENSTSYG00000031914	LSM14B	63	59.420	Carlito_syrichta
ENSLBEG00000016427	lsm14b	97	75.177	ENSCCAG00000021267	LSM14B	62	75.000	Cebus_capucinus
ENSLBEG00000016427	lsm14b	69	71.287	ENSCANG00000036986	LSM14B	56	71.000	Colobus_angolensis_palliatus
ENSLBEG00000016427	lsm14b	66	68.421	ENSCVAG00000012411	-	98	68.421	Cyprinodon_variegatus
ENSLBEG00000016427	lsm14b	66	91.579	ENSCVAG00000005570	-	98	91.579	Cyprinodon_variegatus
ENSLBEG00000016427	lsm14b	66	65.263	ENSGAFG00000013718	-	98	65.263	Gambusia_affinis
ENSLBEG00000016427	lsm14b	86	76.423	ENSHBUG00000011864	-	83	76.423	Haplochromis_burtoni
ENSLBEG00000016427	lsm14b	63	70.000	ENSHBUG00000012323	-	86	70.000	Haplochromis_burtoni
ENSLBEG00000016427	lsm14b	64	88.043	ENSHCOG00000004862	-	84	88.043	Hippocampus_comes
ENSLBEG00000016427	lsm14b	66	66.316	ENSKMAG00000012850	-	98	66.316	Kryptolebias_marmoratus
ENSLBEG00000016427	lsm14b	63	64.444	ENSKMAG00000016674	-	95	61.905	Kryptolebias_marmoratus
ENSLBEG00000016427	lsm14b	97	75.177	ENSMMUG00000014084	LSM14B	63	75.000	Macaca_mulatta
ENSLBEG00000016427	lsm14b	97	75.177	ENSMNEG00000045573	LSM14B	63	75.000	Macaca_nemestrina
ENSLBEG00000016427	lsm14b	69	71.287	ENSMLEG00000040895	LSM14B	56	71.000	Mandrillus_leucophaeus
ENSLBEG00000016427	lsm14b	97	75.887	ENSMICG00000014675	LSM14B	67	75.714	Microcebus_murinus
ENSLBEG00000016427	lsm14b	96	75.714	ENSNGAG00000016305	-	78	81.443	Nannospalax_galili
ENSLBEG00000016427	lsm14b	86	77.236	ENSNBRG00000022606	-	83	77.236	Neolamprologus_brichardi
ENSLBEG00000016427	lsm14b	63	71.111	ENSNBRG00000022370	-	86	71.111	Neolamprologus_brichardi
ENSLBEG00000016427	lsm14b	69	71.287	ENSNLEG00000015757	LSM14B	56	71.000	Nomascus_leucogenys
ENSLBEG00000016427	lsm14b	94	65.217	ENSMEUG00000006305	-	67	65.217	Notamacropus_eugenii
ENSLBEG00000016427	lsm14b	97	74.648	ENSOANG00000003370	LSM14B	55	74.648	Ornithorhynchus_anatinus
ENSLBEG00000016427	lsm14b	66	66.667	ENSORLG00020018184	-	98	66.667	Oryzias_latipes_hni
ENSLBEG00000016427	lsm14b	56	68.750	ENSOMEG00000007241	-	96	68.750	Oryzias_melastigma
ENSLBEG00000016427	lsm14b	73	68.224	ENSPPAG00000035799	LSM14B	56	71.000	Pan_paniscus
ENSLBEG00000016427	lsm14b	97	75.177	ENSPTRG00000013696	LSM14B	63	75.000	Pan_troglodytes
ENSLBEG00000016427	lsm14b	97	75.177	ENSPANG00000011747	LSM14B	63	75.000	Papio_anubis
ENSLBEG00000016427	lsm14b	97	77.305	ENSPKIG00000003275	lsm14b	88	83.158	Paramormyrops_kingsleyae
ENSLBEG00000016427	lsm14b	57	59.259	ENSPMGG00000004595	-	82	59.259	Periophthalmus_magnuspinnatus
ENSLBEG00000016427	lsm14b	98	88.571	ENSPMGG00000014569	lsm14b	87	88.571	Periophthalmus_magnuspinnatus
ENSLBEG00000016427	lsm14b	74	85.981	ENSPREG00000016484	-	69	85.981	Poecilia_reticulata
ENSLBEG00000016427	lsm14b	58	66.265	ENSPREG00000007817	-	95	66.265	Poecilia_reticulata
ENSLBEG00000016427	lsm14b	97	75.887	ENSPCOG00000013625	LSM14B	64	75.714	Propithecus_coquereli
ENSLBEG00000016427	lsm14b	63	70.000	ENSPNYG00000021706	-	85	70.000	Pundamilia_nyererei
ENSLBEG00000016427	lsm14b	86	76.423	ENSPNYG00000019601	-	83	76.423	Pundamilia_nyererei
ENSLBEG00000016427	lsm14b	69	71.287	ENSSBOG00000032820	LSM14B	56	71.000	Saimiri_boliviensis_boliviensis
ENSLBEG00000016427	lsm14b	59	72.941	ENSSLDG00000012686	-	92	72.941	Seriola_lalandi_dorsalis
ENSLBEG00000016427	lsm14b	59	72.941	ENSSLDG00000011341	-	92	72.941	Seriola_lalandi_dorsalis
ENSLBEG00000016427	lsm14b	58	97.590	ENSSLDG00000011706	-	90	97.590	Seriola_lalandi_dorsalis
ENSLBEG00000016427	lsm14b	68	65.979	ENSSPAG00000018837	-	96	65.979	Stegastes_partitus
ENSLBEG00000016427	lsm14b	64	94.565	ENSXCOG00000017365	-	93	94.565	Xiphophorus_couchianus
ENSLBEG00000016427	lsm14b	60	62.791	ENSXCOG00000011423	-	95	62.791	Xiphophorus_couchianus
ENSLBEG00000016427	lsm14b	60	62.791	ENSXMAG00000015481	-	95	62.791	Xiphophorus_maculatus