EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000016890 (Gene tree)
Gene ID: 109990211
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 10571 bases
Position: chrFKLU01000179.1:385363-395933
Accession: 109990211
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000022019	DEAD	PF00270.29	1e-40	1	1
ENSLBEP00000022044	DEAD	PF00270.29	1.7e-25	1	2
ENSLBEP00000022044	DEAD	PF00270.29	1.7e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000023188	-	7180	XM_020642245	ENSLBEP00000022019	496 (aa)	XP_020497901	UPI0009B36D13
ENSLBET00000023212	-	1344	-	ENSLBEP00000022044	447 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000016890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000016890's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000016890	-	72	36.997	ENSLBEG00000011290	zgc:193690	75	36.997
ENSLBEG00000016890	-	76	40.000	ENSLBEG00000008635	eif4a2	91	40.000
ENSLBEG00000016890	-	70	40.741	ENSLBEG00000012311	-	65	32.061
ENSLBEG00000016890	-	76	31.877	ENSLBEG00000007913	ddx43	54	31.877
ENSLBEG00000016890	-	77	36.693	ENSLBEG00000002817	DDX39A	88	36.842
ENSLBEG00000016890	-	70	40.741	ENSLBEG00000016034	-	63	32.626
ENSLBEG00000016890	-	77	36.269	ENSLBEG00000025618	-	90	36.269
ENSLBEG00000016890	-	55	31.301	ENSLBEG00000028087	DDX41	66	30.239
ENSLBEG00000016890	-	72	31.793	ENSLBEG00000010767	DDX5	55	32.479
ENSLBEG00000016890	-	65	30.909	ENSLBEG00000027227	ddx18	50	30.909
ENSLBEG00000016890	-	67	31.549	ENSLBEG00000021815	ddx55	59	31.549
ENSLBEG00000016890	-	74	31.818	ENSLBEG00000027804	ddx49	78	31.818
ENSLBEG00000016890	-	73	30.623	ENSLBEG00000022589	ddx27	51	30.894
ENSLBEG00000016890	-	97	86.902	ENSLBEG00000001740	ddx61	98	86.902
ENSLBEG00000016890	-	54	32.721	ENSLBEG00000017177	-	78	32.721
ENSLBEG00000016890	-	72	31.421	ENSLBEG00000022905	ddx5	60	31.680
ENSLBEG00000016890	-	70	39.344	ENSLBEG00000019504	ddx4	50	39.344
ENSLBEG00000016890	-	77	34.884	ENSLBEG00000012254	ddx39b	90	34.545
ENSLBEG00000016890	-	74	38.978	ENSLBEG00000018971	eif4a1b	92	38.978
ENSLBEG00000016890	-	70	35.714	ENSLBEG00000013395	ddx19	79	35.714
ENSLBEG00000016890	-	73	32.258	ENSLBEG00000026649	-	72	30.960
ENSLBEG00000016890	-	97	76.495	ENSLBEG00000017823	ddx6	99	71.937
ENSLBEG00000016890	-	70	36.538	ENSLBEG00000000341	ddx19	80	36.538
ENSLBEG00000016890	-	73	30.376	ENSLBEG00000015403	ddx52	55	30.376
ENSLBEG00000016890	-	93	30.849	ENSLBEG00000028348	ddx47	82	32.258
ENSLBEG00000016890	-	73	31.527	ENSLBEG00000019475	ddx23	51	31.527
ENSLBEG00000016890	-	71	37.216	ENSLBEG00000020356	eif4a3	94	37.216
ENSLBEG00000016890	-	78	34.171	ENSLBEG00000019194	ddx20	51	34.171
ENSLBEG00000016890	-	65	30.909	ENSLBEG00000023115	DDX18	51	30.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000016890	-	98	85.567	ENSAPOG00000014829	ddx61	98	85.773	Acanthochromis_polyacanthus
ENSLBEG00000016890	-	76	97.867	ENSAPOG00000023627	-	95	97.867	Acanthochromis_polyacanthus
ENSLBEG00000016890	-	100	87.097	ENSACIG00000018355	-	100	87.097	Amphilophus_citrinellus
ENSLBEG00000016890	-	98	86.804	ENSAOCG00000007627	ddx61	98	87.010	Amphiprion_ocellaris
ENSLBEG00000016890	-	100	94.355	ENSAOCG00000006269	-	100	94.556	Amphiprion_ocellaris
ENSLBEG00000016890	-	98	86.804	ENSAPEG00000007293	ddx61	98	87.010	Amphiprion_percula
ENSLBEG00000016890	-	100	94.355	ENSAPEG00000021368	-	100	94.556	Amphiprion_percula
ENSLBEG00000016890	-	100	94.355	ENSAPEG00000020642	-	100	94.556	Amphiprion_percula
ENSLBEG00000016890	-	100	92.742	ENSATEG00000005424	-	100	92.742	Anabas_testudineus
ENSLBEG00000016890	-	97	87.083	ENSATEG00000011302	ddx61	99	86.975	Anabas_testudineus
ENSLBEG00000016890	-	100	93.750	ENSACLG00000003260	-	100	93.750	Astatotilapia_calliptera
ENSLBEG00000016890	-	98	86.094	ENSACLG00000027620	ddx61	99	86.094	Astatotilapia_calliptera
ENSLBEG00000016890	-	99	86.028	ENSAMXG00000033980	-	100	86.028	Astyanax_mexicanus
ENSLBEG00000016890	-	97	85.804	ENSAMXG00000032542	ddx61	99	85.072	Astyanax_mexicanus
ENSLBEG00000016890	-	100	92.944	ENSCSEG00000009893	-	100	92.944	Cynoglossus_semilaevis
ENSLBEG00000016890	-	100	90.157	ENSCVAG00000011006	-	100	89.718	Cyprinodon_variegatus
ENSLBEG00000016890	-	99	84.694	ENSDARG00000018425	ddx61	99	84.694	Danio_rerio
ENSLBEG00000016890	-	98	88.235	ENSELUG00000020545	ddx61	99	87.730	Esox_lucius
ENSLBEG00000016890	-	99	88.755	ENSELUG00000022538	-	99	88.554	Esox_lucius
ENSLBEG00000016890	-	100	90.524	ENSFHEG00000015487	-	100	89.516	Fundulus_heteroclitus
ENSLBEG00000016890	-	67	88.218	ENSGMOG00000003561	-	100	88.218	Gadus_morhua
ENSLBEG00000016890	-	96	88.050	ENSGMOG00000013762	ddx61	99	87.371	Gadus_morhua
ENSLBEG00000016890	-	100	89.738	ENSGAFG00000015865	-	100	89.135	Gambusia_affinis
ENSLBEG00000016890	-	98	83.800	ENSGACG00000003401	ddx61	100	84.725	Gasterosteus_aculeatus
ENSLBEG00000016890	-	99	94.898	ENSGACG00000002413	-	100	94.898	Gasterosteus_aculeatus
ENSLBEG00000016890	-	98	86.299	ENSHBUG00000017832	ddx61	99	86.299	Haplochromis_burtoni
ENSLBEG00000016890	-	100	93.750	ENSHBUG00000017033	-	100	93.750	Haplochromis_burtoni
ENSLBEG00000016890	-	100	89.919	ENSHCOG00000012238	-	100	89.919	Hippocampus_comes
ENSLBEG00000016890	-	97	83.299	ENSHCOG00000008184	ddx61	97	83.299	Hippocampus_comes
ENSLBEG00000016890	-	96	87.395	ENSIPUG00000008367	-	100	85.685	Ictalurus_punctatus
ENSLBEG00000016890	-	96	84.421	ENSIPUG00000012823	DDX6	99	82.992	Ictalurus_punctatus
ENSLBEG00000016890	-	100	92.540	ENSKMAG00000007213	-	100	92.540	Kryptolebias_marmoratus
ENSLBEG00000016890	-	97	82.680	ENSLACG00000015214	ddx61	100	82.680	Latimeria_chalumnae
ENSLBEG00000016890	-	76	78.906	ENSLOCG00000004352	ddx61	94	50.233	Lepisosteus_oculatus
ENSLBEG00000016890	-	100	93.973	ENSMAMG00000005559	-	100	93.973	Mastacembelus_armatus
ENSLBEG00000016890	-	97	86.307	ENSMAMG00000005321	ddx61	97	86.722	Mastacembelus_armatus
ENSLBEG00000016890	-	100	93.750	ENSMZEG00005026268	-	100	93.750	Maylandia_zebra
ENSLBEG00000016890	-	98	86.299	ENSMZEG00005003556	ddx61	99	86.299	Maylandia_zebra
ENSLBEG00000016890	-	96	84.874	ENSMMOG00000007415	ddx61	97	85.294	Mola_mola
ENSLBEG00000016890	-	71	77.054	ENSMMOG00000008825	-	92	77.054	Mola_mola
ENSLBEG00000016890	-	100	94.631	ENSMMOG00000013694	-	100	94.631	Mola_mola
ENSLBEG00000016890	-	97	74.897	ENSMALG00000013776	ddx61	96	75.103	Monopterus_albus
ENSLBEG00000016890	-	100	92.742	ENSMALG00000013817	-	100	92.742	Monopterus_albus
ENSLBEG00000016890	-	100	87.298	ENSNBRG00000015075	-	100	87.298	Neolamprologus_brichardi
ENSLBEG00000016890	-	98	79.424	ENSNBRG00000015800	ddx61	99	79.424	Neolamprologus_brichardi
ENSLBEG00000016890	-	98	86.392	ENSONIG00000011418	ddx61	99	86.392	Oreochromis_niloticus
ENSLBEG00000016890	-	100	93.952	ENSONIG00000013748	-	100	93.952	Oreochromis_niloticus
ENSLBEG00000016890	-	100	91.734	ENSORLG00000009178	-	100	91.734	Oryzias_latipes
ENSLBEG00000016890	-	100	91.734	ENSORLG00020015515	-	100	91.734	Oryzias_latipes_hni
ENSLBEG00000016890	-	100	91.532	ENSORLG00015006764	-	100	91.532	Oryzias_latipes_hsok
ENSLBEG00000016890	-	96	93.023	ENSOMEG00000022326	-	99	93.023	Oryzias_melastigma
ENSLBEG00000016890	-	97	90.605	ENSPKIG00000024264	ddx61	99	88.821	Paramormyrops_kingsleyae
ENSLBEG00000016890	-	100	81.526	ENSPMGG00000013355	-	100	80.478	Periophthalmus_magnuspinnatus
ENSLBEG00000016890	-	100	90.323	ENSPFOG00000005750	-	100	89.718	Poecilia_formosa
ENSLBEG00000016890	-	100	90.380	ENSPLAG00000000403	-	100	89.718	Poecilia_latipinna
ENSLBEG00000016890	-	100	89.919	ENSPMEG00000023737	-	100	89.315	Poecilia_mexicana
ENSLBEG00000016890	-	100	93.750	ENSPNYG00000003986	-	100	93.750	Pundamilia_nyererei
ENSLBEG00000016890	-	98	80.228	ENSPNYG00000015045	ddx61	99	80.228	Pundamilia_nyererei
ENSLBEG00000016890	-	97	85.421	ENSPNAG00000024072	ddx61	99	85.421	Pygocentrus_nattereri
ENSLBEG00000016890	-	99	87.324	ENSPNAG00000008742	-	100	87.324	Pygocentrus_nattereri
ENSLBEG00000016890	-	96	88.866	ENSSFOG00015021404	ddx61	99	87.018	Scleropages_formosus
ENSLBEG00000016890	-	100	92.742	ENSSMAG00000001793	-	100	92.742	Scophthalmus_maximus
ENSLBEG00000016890	-	96	87.185	ENSSMAG00000006591	ddx61	97	86.515	Scophthalmus_maximus
ENSLBEG00000016890	-	96	88.655	ENSSDUG00000009713	ddx61	99	87.117	Seriola_dumerili
ENSLBEG00000016890	-	100	95.089	ENSSDUG00000007530	-	100	95.089	Seriola_dumerili
ENSLBEG00000016890	-	100	95.089	ENSSLDG00000007608	-	100	95.089	Seriola_lalandi_dorsalis
ENSLBEG00000016890	-	96	88.655	ENSSLDG00000000132	ddx61	99	87.117	Seriola_lalandi_dorsalis
ENSLBEG00000016890	-	100	94.960	ENSSPAG00000013878	-	100	94.960	Stegastes_partitus
ENSLBEG00000016890	-	96	87.789	ENSSPAG00000001578	ddx61	98	86.777	Stegastes_partitus
ENSLBEG00000016890	-	99	90.707	ENSTRUG00000012432	-	99	90.909	Takifugu_rubripes
ENSLBEG00000016890	-	98	90.965	ENSTNIG00000003560	-	100	90.965	Tetraodon_nigroviridis
ENSLBEG00000016890	-	100	89.955	ENSXCOG00000001406	-	100	89.286	Xiphophorus_couchianus
ENSLBEG00000016890	-	100	89.955	ENSXMAG00000016090	-	100	89.336	Xiphophorus_maculatus