EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000017177 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 5961 bases
Position: chrFKLU01006861.1:3714-9674
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000022385	ResIII	PF04851.15	8.6e-09	1	1
ENSLBEP00000022371	ResIII	PF04851.15	1.4e-08	1	1
ENSLBEP00000022385	DEAD	PF00270.29	4.7e-37	1	1
ENSLBEP00000022371	DEAD	PF00270.29	8.1e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000023550	-	1314	-	ENSLBEP00000022371	349 (aa)	-	-
ENSLBET00000023564	-	819	-	ENSLBEP00000022385	272 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000017177's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000017177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000017177	-	82	37.768	ENSLBEG00000008635	eif4a2	69	36.237
ENSLBEG00000017177	-	78	33.088	ENSLBEG00000001740	ddx61	60	33.088
ENSLBEG00000017177	-	81	31.142	ENSLBEG00000027804	ddx49	61	31.142
ENSLBEG00000017177	-	82	33.449	ENSLBEG00000018971	eif4a1b	70	33.449
ENSLBEG00000017177	-	85	94.286	ENSLBEG00000012254	ddx39b	66	97.527
ENSLBEG00000017177	-	81	30.526	ENSLBEG00000028348	ddx47	57	30.526
ENSLBEG00000017177	-	72	35.178	ENSLBEG00000020356	eif4a3	67	35.178
ENSLBEG00000017177	-	78	32.721	ENSLBEG00000016890	-	54	32.721
ENSLBEG00000017177	-	78	30.769	ENSLBEG00000017823	ddx6	54	30.657
ENSLBEG00000017177	-	81	73.050	ENSLBEG00000002817	DDX39A	63	73.050
ENSLBEG00000017177	-	81	74.823	ENSLBEG00000025618	-	66	74.823

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000017177	-	85	75.102	ENSG00000198563	DDX39B	100	76.050	Homo_sapiens
ENSLBEG00000017177	-	85	75.102	ENSAMEG00000009508	DDX39B	66	79.078	Ailuropoda_melanoleuca
ENSLBEG00000017177	-	81	81.139	ENSACIG00000004534	ddx39b	65	81.139	Amphilophus_citrinellus
ENSLBEG00000017177	-	81	81.495	ENSATEG00000012366	ddx39b	65	81.495	Anabas_testudineus
ENSLBEG00000017177	-	85	75.102	ENSACAG00000012240	DDX39B	70	76.000	Anolis_carolinensis
ENSLBEG00000017177	-	85	75.102	ENSANAG00000030372	DDX39B	66	79.078	Aotus_nancymaae
ENSLBEG00000017177	-	81	81.139	ENSACLG00000018759	ddx39b	64	81.139	Astatotilapia_calliptera
ENSLBEG00000017177	-	81	80.427	ENSAMXG00000017837	ddx39b	64	80.427	Astyanax_mexicanus
ENSLBEG00000017177	-	85	75.102	ENSBTAG00000014490	DDX39B	66	79.078	Bos_taurus
ENSLBEG00000017177	-	85	75.102	ENSCJAG00000003152	DDX39B	66	79.078	Callithrix_jacchus
ENSLBEG00000017177	-	81	79.078	ENSCAFG00000000509	DDX39B	66	79.078	Canis_familiaris
ENSLBEG00000017177	-	81	79.078	ENSCAFG00020020530	DDX39B	66	79.078	Canis_lupus_dingo
ENSLBEG00000017177	-	85	75.102	ENSCHIG00000004579	DDX39B	66	79.078	Capra_hircus
ENSLBEG00000017177	-	85	75.102	ENSTSYG00000010226	-	66	79.078	Carlito_syrichta
ENSLBEG00000017177	-	82	74.009	ENSTSYG00000029741	-	91	73.500	Carlito_syrichta
ENSLBEG00000017177	-	85	75.102	ENSCAPG00000010066	DDX39B	66	79.078	Cavia_aperea
ENSLBEG00000017177	-	85	75.102	ENSCPOG00000002335	DDX39B	66	79.078	Cavia_porcellus
ENSLBEG00000017177	-	85	75.102	ENSCCAG00000027897	DDX39B	66	79.078	Cebus_capucinus
ENSLBEG00000017177	-	85	68.980	ENSCATG00000043709	DDX39B	66	71.277	Cercocebus_atys
ENSLBEG00000017177	-	85	75.102	ENSCLAG00000014555	DDX39B	66	79.078	Chinchilla_lanigera
ENSLBEG00000017177	-	85	75.102	ENSCSAG00000008517	DDX39B	66	79.078	Chlorocebus_sabaeus
ENSLBEG00000017177	-	90	73.462	ENSCANG00000041217	DDX39B	78	75.403	Colobus_angolensis_palliatus
ENSLBEG00000017177	-	92	72.075	ENSCGRG00001017315	-	95	74.757	Cricetulus_griseus_chok1gshd
ENSLBEG00000017177	-	69	65.844	ENSCGRG00001021916	-	60	65.844	Cricetulus_griseus_chok1gshd
ENSLBEG00000017177	-	70	74.146	ENSCGRG00000000078	-	90	74.146	Cricetulus_griseus_crigri
ENSLBEG00000017177	-	99	69.258	ENSCGRG00000012479	-	77	74.597	Cricetulus_griseus_crigri
ENSLBEG00000017177	-	81	80.427	ENSDARG00000036069	ddx39b	65	80.427	Danio_rerio
ENSLBEG00000017177	-	85	75.102	ENSDNOG00000010215	DDX39B	66	79.078	Dasypus_novemcinctus
ENSLBEG00000017177	-	85	75.102	ENSDORG00000004985	Ddx39b	75	79.078	Dipodomys_ordii
ENSLBEG00000017177	-	85	74.286	ENSETEG00000009649	DDX39B	66	65.603	Echinops_telfairi
ENSLBEG00000017177	-	85	75.102	ENSEASG00005017156	DDX39B	66	79.078	Equus_asinus_asinus
ENSLBEG00000017177	-	85	75.102	ENSECAG00000007750	DDX39B	66	79.078	Equus_caballus
ENSLBEG00000017177	-	81	80.427	ENSELUG00000017904	ddx39b	65	80.427	Esox_lucius
ENSLBEG00000017177	-	85	75.102	ENSFCAG00000004497	DDX39B	66	79.078	Felis_catus
ENSLBEG00000017177	-	85	75.102	ENSFDAG00000011074	DDX39B	66	79.078	Fukomys_damarensis
ENSLBEG00000017177	-	57	76.000	ENSGAGG00000001300	-	51	76.000	Gopherus_agassizii
ENSLBEG00000017177	-	90	73.462	ENSGGOG00000005989	DDX39B	78	75.403	Gorilla_gorilla
ENSLBEG00000017177	-	90	62.738	ENSHBUG00000022054	-	80	74.537	Haplochromis_burtoni
ENSLBEG00000017177	-	81	79.359	ENSHGLG00000019248	DDX39B	66	79.078	Heterocephalus_glaber_female
ENSLBEG00000017177	-	81	79.359	ENSHGLG00100011850	DDX39B	66	79.078	Heterocephalus_glaber_male
ENSLBEG00000017177	-	81	80.427	ENSIPUG00000015733	DDX39B	61	80.427	Ictalurus_punctatus
ENSLBEG00000017177	-	85	75.102	ENSSTOG00000012838	DDX39B	66	79.078	Ictidomys_tridecemlineatus
ENSLBEG00000017177	-	81	78.369	ENSJJAG00000005660	-	66	78.369	Jaculus_jaculus
ENSLBEG00000017177	-	81	68.293	ENSLACG00000002110	DDX39B	66	68.293	Latimeria_chalumnae
ENSLBEG00000017177	-	90	73.077	ENSLAFG00000014202	DDX39B	95	75.000	Loxodonta_africana
ENSLBEG00000017177	-	90	73.462	ENSMFAG00000034233	DDX39B	78	75.403	Macaca_fascicularis
ENSLBEG00000017177	-	90	73.462	ENSMMUG00000008839	DDX39B	78	75.403	Macaca_mulatta
ENSLBEG00000017177	-	90	73.462	ENSMNEG00000041059	DDX39B	78	75.403	Macaca_nemestrina
ENSLBEG00000017177	-	90	73.462	ENSMLEG00000043791	DDX39B	78	75.403	Mandrillus_leucophaeus
ENSLBEG00000017177	-	81	81.495	ENSMZEG00005017654	ddx39b	64	81.495	Maylandia_zebra
ENSLBEG00000017177	-	81	78.723	ENSMAUG00000008059	Ddx39b	66	78.723	Mesocricetus_auratus
ENSLBEG00000017177	-	85	75.102	ENSMICG00000017349	DDX39B	66	79.078	Microcebus_murinus
ENSLBEG00000017177	-	81	78.723	ENSMOCG00000011169	Ddx39b	66	78.723	Microtus_ochrogaster
ENSLBEG00000017177	-	85	75.102	ENSMODG00000015791	DDX39B	66	79.078	Monodelphis_domestica
ENSLBEG00000017177	-	61	74.860	MGP_CAROLIEiJ_G0021519	-	97	74.860	Mus_caroli
ENSLBEG00000017177	-	81	79.078	ENSMUSG00000019432	Ddx39b	100	79.730	Mus_musculus
ENSLBEG00000017177	-	81	79.078	MGP_PahariEiJ_G0020513	Ddx39b	100	79.730	Mus_pahari
ENSLBEG00000017177	-	99	69.258	MGP_SPRETEiJ_G0022424	Ddx39b	77	74.597	Mus_spretus
ENSLBEG00000017177	-	85	75.102	ENSMPUG00000011407	DDX39B	66	79.078	Mustela_putorius_furo
ENSLBEG00000017177	-	56	75.385	ENSMLUG00000001681	DDX39B	63	75.385	Myotis_lucifugus
ENSLBEG00000017177	-	85	75.102	ENSNGAG00000022948	Ddx39b	66	79.078	Nannospalax_galili
ENSLBEG00000017177	-	60	80.488	ENSNLEG00000006094	DDX39B	59	80.488	Nomascus_leucogenys
ENSLBEG00000017177	-	62	85.088	ENSMEUG00000008264	DDX39B	51	85.088	Notamacropus_eugenii
ENSLBEG00000017177	-	85	75.102	ENSOPRG00000011923	DDX39B	66	79.078	Ochotona_princeps
ENSLBEG00000017177	-	81	79.078	ENSODEG00000018083	DDX39B	66	79.078	Octodon_degus
ENSLBEG00000017177	-	81	80.783	ENSONIG00000004740	ddx39b	65	80.783	Oreochromis_niloticus
ENSLBEG00000017177	-	82	75.105	ENSOANG00000008361	DDX39B	95	75.105	Ornithorhynchus_anatinus
ENSLBEG00000017177	-	81	74.747	ENSOCUG00000024126	DDX39B	67	74.747	Oryctolagus_cuniculus
ENSLBEG00000017177	-	81	78.445	ENSOGAG00000028850	-	66	78.445	Otolemur_garnettii
ENSLBEG00000017177	-	69	69.767	ENSOGAG00000009067	-	65	76.303	Otolemur_garnettii
ENSLBEG00000017177	-	85	75.102	ENSOARG00000008787	DDX39B	65	79.078	Ovis_aries
ENSLBEG00000017177	-	85	75.102	ENSPPAG00000043072	DDX39B	66	79.078	Pan_paniscus
ENSLBEG00000017177	-	85	75.102	ENSPPRG00000001913	DDX39B	66	79.078	Panthera_pardus
ENSLBEG00000017177	-	81	78.723	ENSPTIG00000017669	DDX39B	66	78.723	Panthera_tigris_altaica
ENSLBEG00000017177	-	85	75.102	ENSPTRG00000032509	DDX39B	66	79.078	Pan_troglodytes
ENSLBEG00000017177	-	90	73.462	ENSPANG00000018609	DDX39B	78	75.403	Papio_anubis
ENSLBEG00000017177	-	81	80.427	ENSPKIG00000011324	ddx39b	64	80.427	Paramormyrops_kingsleyae
ENSLBEG00000017177	-	81	78.723	ENSPEMG00000016905	Ddx39b	66	78.723	Peromyscus_maniculatus_bairdii
ENSLBEG00000017177	-	85	75.102	ENSPCIG00000017572	DDX39B	66	79.078	Phascolarctos_cinereus
ENSLBEG00000017177	-	85	75.102	ENSPPYG00000016433	DDX39B	66	79.078	Pongo_abelii
ENSLBEG00000017177	-	85	75.102	ENSPCOG00000018656	DDX39B	70	79.078	Propithecus_coquereli
ENSLBEG00000017177	-	81	79.078	ENSPVAG00000004653	DDX39B	66	79.078	Pteropus_vampyrus
ENSLBEG00000017177	-	81	67.606	ENSPNYG00000010382	ddx39b	63	67.606	Pundamilia_nyererei
ENSLBEG00000017177	-	81	80.427	ENSPNAG00000026926	ddx39b	64	80.427	Pygocentrus_nattereri
ENSLBEG00000017177	-	81	79.078	ENSRNOG00000000841	Ddx39b	71	79.078	Rattus_norvegicus
ENSLBEG00000017177	-	90	73.462	ENSRBIG00000031309	DDX39B	78	75.403	Rhinopithecus_bieti
ENSLBEG00000017177	-	90	73.462	ENSRROG00000039517	DDX39B	78	75.403	Rhinopithecus_roxellana
ENSLBEG00000017177	-	99	69.258	ENSSBOG00000035513	-	78	75.403	Saimiri_boliviensis_boliviensis
ENSLBEG00000017177	-	85	75.102	ENSSHAG00000003209	DDX39B	66	79.078	Sarcophilus_harrisii
ENSLBEG00000017177	-	81	80.783	ENSSFOG00015016107	ddx39b	64	80.783	Scleropages_formosus
ENSLBEG00000017177	-	81	81.495	ENSSDUG00000011557	ddx39b	65	81.495	Seriola_dumerili
ENSLBEG00000017177	-	81	81.139	ENSSLDG00000015763	ddx39b	65	81.139	Seriola_lalandi_dorsalis
ENSLBEG00000017177	-	85	74.694	ENSSARG00000005245	DDX39B	75	66.312	Sorex_araneus
ENSLBEG00000017177	-	81	79.078	ENSSPUG00000012805	DDX39B	66	79.078	Sphenodon_punctatus
ENSLBEG00000017177	-	85	75.102	ENSSSCG00000001400	DDX39B	69	79.487	Sus_scrofa
ENSLBEG00000017177	-	70	63.415	ENSTBEG00000003721	DDX39B	66	51.773	Tupaia_belangeri
ENSLBEG00000017177	-	81	69.338	ENSTTRG00000014074	DDX39B	66	69.338	Tursiops_truncatus
ENSLBEG00000017177	-	86	67.200	ENSUAMG00000027335	DDX39B	63	67.200	Ursus_americanus
ENSLBEG00000017177	-	86	66.935	ENSUMAG00000015124	DDX39B	94	64.878	Ursus_maritimus
ENSLBEG00000017177	-	54	86.747	ENSVPAG00000009167	-	53	86.747	Vicugna_pacos
ENSLBEG00000017177	-	86	75.000	ENSVVUG00000019518	DDX39B	65	79.078	Vulpes_vulpes
ENSLBEG00000017177	-	81	65.398	ENSXETG00000002498	ddx39b	66	65.371	Xenopus_tropicalis