EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000017379 (Gene tree)
Gene ID: -
Gene Symbol: lsm5
Alias: zgc:171959
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 1455 bases
Position: chrFKLU01000285.1:240905-242359
Accession: ZDB-GENE-070822-23
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000022665	LSM	PF01423.22	2.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000023850	-	186	-	ENSLBEP00000022665	61 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000017379's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000017379's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000017379	lsm5	90	87.273	ENSG00000106355	LSM5	86	87.273	Homo_sapiens
ENSLBEG00000017379	lsm5	92	83.929	ENSAPOG00000020779	LSM5	66	83.929	Acanthochromis_polyacanthus
ENSLBEG00000017379	lsm5	92	83.929	ENSAPOG00000011743	LSM5	63	83.929	Acanthochromis_polyacanthus
ENSLBEG00000017379	lsm5	92	80.357	ENSAMEG00000006700	LSM5	62	80.357	Ailuropoda_melanoleuca
ENSLBEG00000017379	lsm5	92	83.929	ENSAOCG00000001636	lsm5	62	83.929	Amphiprion_ocellaris
ENSLBEG00000017379	lsm5	92	83.929	ENSAPEG00000008151	lsm5	62	83.929	Amphiprion_percula
ENSLBEG00000017379	lsm5	67	80.488	ENSAPLG00000008171	LSM5	55	80.488	Anas_platyrhynchos
ENSLBEG00000017379	lsm5	92	80.357	ENSACAG00000009530	LSM5	93	80.357	Anolis_carolinensis
ENSLBEG00000017379	lsm5	87	92.453	ENSANAG00000034409	-	83	92.453	Aotus_nancymaae
ENSLBEG00000017379	lsm5	92	58.929	ENSANAG00000037758	-	56	58.929	Aotus_nancymaae
ENSLBEG00000017379	lsm5	90	81.818	ENSANAG00000024192	-	78	84.615	Aotus_nancymaae
ENSLBEG00000017379	lsm5	84	86.275	ENSACLG00000012891	lsm5	58	86.275	Astatotilapia_calliptera
ENSLBEG00000017379	lsm5	79	77.083	ENSBTAG00000052014	-	63	77.083	Bos_taurus
ENSLBEG00000017379	lsm5	85	90.385	ENSBTAG00000002332	LSM5	57	90.385	Bos_taurus
ENSLBEG00000017379	lsm5	85	65.385	WBGene00003079	lsm-5	57	65.385	Caenorhabditis_elegans
ENSLBEG00000017379	lsm5	87	90.566	ENSCJAG00000047379	LSM5	83	90.566	Callithrix_jacchus
ENSLBEG00000017379	lsm5	90	65.455	ENSCJAG00000005678	-	62	65.455	Callithrix_jacchus
ENSLBEG00000017379	lsm5	82	92.000	ENSCAFG00000030781	-	58	92.000	Canis_familiaris
ENSLBEG00000017379	lsm5	92	80.357	ENSCAFG00000019261	-	62	80.357	Canis_familiaris
ENSLBEG00000017379	lsm5	92	80.357	ENSCAFG00020004946	LSM5	62	80.357	Canis_lupus_dingo
ENSLBEG00000017379	lsm5	92	80.357	ENSCHIG00000024539	LSM5	62	80.357	Capra_hircus
ENSLBEG00000017379	lsm5	92	80.357	ENSCHIG00000004079	-	62	80.357	Capra_hircus
ENSLBEG00000017379	lsm5	84	64.706	ENSCHIG00000021428	-	64	60.714	Capra_hircus
ENSLBEG00000017379	lsm5	90	87.273	ENSTSYG00000006449	-	86	87.273	Carlito_syrichta
ENSLBEG00000017379	lsm5	92	66.071	ENSTSYG00000028728	-	59	66.071	Carlito_syrichta
ENSLBEG00000017379	lsm5	85	78.846	ENSTSYG00000036637	-	71	78.846	Carlito_syrichta
ENSLBEG00000017379	lsm5	92	57.143	ENSTSYG00000026530	-	53	57.143	Carlito_syrichta
ENSLBEG00000017379	lsm5	66	80.000	ENSCAPG00000006980	LSM5	53	80.000	Cavia_aperea
ENSLBEG00000017379	lsm5	92	80.357	ENSCPOG00000036386	LSM5	80	91.489	Cavia_porcellus
ENSLBEG00000017379	lsm5	92	58.929	ENSCCAG00000032792	-	56	58.929	Cebus_capucinus
ENSLBEG00000017379	lsm5	87	90.566	ENSCCAG00000037808	-	83	90.566	Cebus_capucinus
ENSLBEG00000017379	lsm5	92	78.571	ENSCCAG00000032123	-	62	78.571	Cebus_capucinus
ENSLBEG00000017379	lsm5	92	78.571	ENSCCAG00000000821	-	62	78.571	Cebus_capucinus
ENSLBEG00000017379	lsm5	95	74.138	ENSCATG00000014790	-	100	74.138	Cercocebus_atys
ENSLBEG00000017379	lsm5	90	87.273	ENSCATG00000040218	LSM5	86	87.273	Cercocebus_atys
ENSLBEG00000017379	lsm5	92	71.429	ENSCLAG00000005062	-	55	71.429	Chinchilla_lanigera
ENSLBEG00000017379	lsm5	92	80.357	ENSCLAG00000000202	LSM5	80	91.489	Chinchilla_lanigera
ENSLBEG00000017379	lsm5	92	80.357	ENSCHOG00000005335	LSM5	74	80.357	Choloepus_hoffmanni
ENSLBEG00000017379	lsm5	92	80.357	ENSCPBG00000013685	LSM5	62	80.357	Chrysemys_picta_bellii
ENSLBEG00000017379	lsm5	89	74.074	ENSCING00000020625	-	61	74.074	Ciona_intestinalis
ENSLBEG00000017379	lsm5	89	74.074	ENSCSAVG00000001439	-	61	74.074	Ciona_savignyi
ENSLBEG00000017379	lsm5	90	87.273	ENSCANG00000039909	LSM5	86	87.273	Colobus_angolensis_palliatus
ENSLBEG00000017379	lsm5	92	80.357	ENSCGRG00001015461	Lsm5	80	91.489	Cricetulus_griseus_chok1gshd
ENSLBEG00000017379	lsm5	66	80.000	ENSCGRG00000007677	Lsm5	53	80.000	Cricetulus_griseus_crigri
ENSLBEG00000017379	lsm5	92	87.500	ENSCVAG00000004262	lsm5	62	87.500	Cyprinodon_variegatus
ENSLBEG00000017379	lsm5	92	82.143	ENSDARG00000071573	lsm5	62	82.143	Danio_rerio
ENSLBEG00000017379	lsm5	92	80.357	ENSDNOG00000034958	LSM5	63	80.357	Dasypus_novemcinctus
ENSLBEG00000017379	lsm5	92	71.429	ENSDNOG00000049495	-	62	71.429	Dasypus_novemcinctus
ENSLBEG00000017379	lsm5	92	80.357	ENSDORG00000009422	Lsm5	62	80.357	Dipodomys_ordii
ENSLBEG00000017379	lsm5	90	70.909	FBgn0035675	CG6610	60	70.909	Drosophila_melanogaster
ENSLBEG00000017379	lsm5	52	87.500	ENSETEG00000016074	-	50	87.500	Echinops_telfairi
ENSLBEG00000017379	lsm5	77	80.851	ENSETEG00000010651	-	58	80.851	Echinops_telfairi
ENSLBEG00000017379	lsm5	92	80.357	ENSETEG00000018068	LSM5	62	80.357	Echinops_telfairi
ENSLBEG00000017379	lsm5	90	72.727	ENSETEG00000001469	-	70	72.727	Echinops_telfairi
ENSLBEG00000017379	lsm5	92	82.143	ENSEBUG00000008540	lsm5	62	82.143	Eptatretus_burgeri
ENSLBEG00000017379	lsm5	92	80.357	ENSEASG00005003500	LSM5	62	80.357	Equus_asinus_asinus
ENSLBEG00000017379	lsm5	85	90.385	ENSECAG00000018445	LSM5	63	90.385	Equus_caballus
ENSLBEG00000017379	lsm5	92	85.714	ENSELUG00000007792	lsm5	62	85.714	Esox_lucius
ENSLBEG00000017379	lsm5	90	87.273	ENSFCAG00000000230	LSM5	86	87.273	Felis_catus
ENSLBEG00000017379	lsm5	66	72.500	ENSFDAG00000008685	-	55	72.500	Fukomys_damarensis
ENSLBEG00000017379	lsm5	92	80.357	ENSFDAG00000008767	LSM5	80	91.489	Fukomys_damarensis
ENSLBEG00000017379	lsm5	89	72.727	ENSFHEG00000004011	lsm5	63	72.727	Fundulus_heteroclitus
ENSLBEG00000017379	lsm5	92	87.500	ENSGMOG00000018235	lsm5	62	87.500	Gadus_morhua
ENSLBEG00000017379	lsm5	92	80.357	ENSGALG00000041625	LSM5	62	80.357	Gallus_gallus
ENSLBEG00000017379	lsm5	92	85.714	ENSGACG00000005528	lsm5	62	85.714	Gasterosteus_aculeatus
ENSLBEG00000017379	lsm5	92	80.357	ENSGAGG00000015593	LSM5	62	80.357	Gopherus_agassizii
ENSLBEG00000017379	lsm5	90	87.273	ENSGGOG00000043469	LSM5	86	87.273	Gorilla_gorilla
ENSLBEG00000017379	lsm5	84	86.275	ENSHBUG00000013773	lsm5	58	86.275	Haplochromis_burtoni
ENSLBEG00000017379	lsm5	92	80.357	ENSHGLG00000011765	LSM5	80	91.489	Heterocephalus_glaber_female
ENSLBEG00000017379	lsm5	92	75.000	ENSHGLG00100015610	LSM5	79	85.106	Heterocephalus_glaber_male
ENSLBEG00000017379	lsm5	82	96.000	ENSIPUG00000021095	LSM5	56	96.000	Ictalurus_punctatus
ENSLBEG00000017379	lsm5	92	80.357	ENSSTOG00000012662	LSM5	80	91.489	Ictidomys_tridecemlineatus
ENSLBEG00000017379	lsm5	80	66.667	ENSSTOG00000033886	-	57	66.667	Ictidomys_tridecemlineatus
ENSLBEG00000017379	lsm5	92	73.214	ENSJJAG00000004475	-	71	73.214	Jaculus_jaculus
ENSLBEG00000017379	lsm5	92	76.786	ENSJJAG00000012145	-	62	76.786	Jaculus_jaculus
ENSLBEG00000017379	lsm5	92	51.786	ENSJJAG00000016144	-	52	51.786	Jaculus_jaculus
ENSLBEG00000017379	lsm5	100	83.607	ENSKMAG00000021861	lsm5	62	83.929	Kryptolebias_marmoratus
ENSLBEG00000017379	lsm5	92	82.143	ENSLACG00000022448	LSM5	62	82.143	Latimeria_chalumnae
ENSLBEG00000017379	lsm5	92	83.929	ENSLOCG00000012903	lsm5	62	83.929	Lepisosteus_oculatus
ENSLBEG00000017379	lsm5	92	80.357	ENSLAFG00000029579	LSM5	62	80.357	Loxodonta_africana
ENSLBEG00000017379	lsm5	92	50.000	ENSLAFG00000027938	-	56	50.000	Loxodonta_africana
ENSLBEG00000017379	lsm5	90	87.273	ENSMFAG00000038508	LSM5	86	87.273	Macaca_fascicularis
ENSLBEG00000017379	lsm5	92	78.571	ENSMFAG00000030152	-	62	78.571	Macaca_fascicularis
ENSLBEG00000017379	lsm5	79	85.417	ENSMFAG00000031187	-	81	85.417	Macaca_fascicularis
ENSLBEG00000017379	lsm5	90	78.182	ENSMMUG00000039822	-	67	78.182	Macaca_mulatta
ENSLBEG00000017379	lsm5	90	87.273	ENSMMUG00000045129	-	86	87.273	Macaca_mulatta
ENSLBEG00000017379	lsm5	92	78.571	ENSMMUG00000030131	-	62	78.571	Macaca_mulatta
ENSLBEG00000017379	lsm5	92	78.571	ENSMNEG00000037935	-	62	78.571	Macaca_nemestrina
ENSLBEG00000017379	lsm5	92	85.714	ENSMNEG00000015331	LSM5	85	85.714	Macaca_nemestrina
ENSLBEG00000017379	lsm5	90	87.273	ENSMLEG00000024945	LSM5	86	87.273	Mandrillus_leucophaeus
ENSLBEG00000017379	lsm5	89	77.778	ENSMLEG00000034037	-	90	77.778	Mandrillus_leucophaeus
ENSLBEG00000017379	lsm5	92	78.571	ENSMAMG00000012869	lsm5	62	78.571	Mastacembelus_armatus
ENSLBEG00000017379	lsm5	84	86.275	ENSMZEG00005019554	lsm5	58	86.275	Maylandia_zebra
ENSLBEG00000017379	lsm5	92	80.357	ENSMGAG00000012117	LSM5	62	80.357	Meleagris_gallopavo
ENSLBEG00000017379	lsm5	92	80.357	ENSMAUG00000012222	Lsm5	80	91.489	Mesocricetus_auratus
ENSLBEG00000017379	lsm5	92	78.571	ENSMAUG00000008132	-	62	78.571	Mesocricetus_auratus
ENSLBEG00000017379	lsm5	90	45.455	ENSMICG00000033928	-	51	45.455	Microcebus_murinus
ENSLBEG00000017379	lsm5	90	87.273	ENSMICG00000005353	LSM5	86	87.273	Microcebus_murinus
ENSLBEG00000017379	lsm5	92	80.357	ENSMOCG00000012018	Lsm5	80	91.489	Microtus_ochrogaster
ENSLBEG00000017379	lsm5	92	80.357	MGP_CAROLIEiJ_G0028421	Lsm5	95	97.500	Mus_caroli
ENSLBEG00000017379	lsm5	92	80.357	ENSMUSG00000091625	Lsm5	95	97.500	Mus_musculus
ENSLBEG00000017379	lsm5	92	80.357	MGP_PahariEiJ_G0022171	Lsm5	95	97.500	Mus_pahari
ENSLBEG00000017379	lsm5	92	80.357	MGP_SPRETEiJ_G0029423	Lsm5	95	97.500	Mus_spretus
ENSLBEG00000017379	lsm5	92	80.357	ENSMLUG00000017028	LSM5	62	80.357	Myotis_lucifugus
ENSLBEG00000017379	lsm5	90	52.727	ENSNGAG00000022569	-	54	52.727	Nannospalax_galili
ENSLBEG00000017379	lsm5	92	80.357	ENSNGAG00000024142	Lsm5	80	91.489	Nannospalax_galili
ENSLBEG00000017379	lsm5	74	97.778	ENSNBRG00000009964	LSM5	96	97.778	Neolamprologus_brichardi
ENSLBEG00000017379	lsm5	90	87.273	ENSNLEG00000015268	LSM5	86	87.273	Nomascus_leucogenys
ENSLBEG00000017379	lsm5	66	80.000	ENSOPRG00000002443	LSM5	53	80.000	Ochotona_princeps
ENSLBEG00000017379	lsm5	92	80.357	ENSODEG00000008258	-	62	80.357	Octodon_degus
ENSLBEG00000017379	lsm5	92	80.357	ENSODEG00000019072	-	62	80.357	Octodon_degus
ENSLBEG00000017379	lsm5	64	61.538	ENSOANG00000014540	-	52	61.538	Ornithorhynchus_anatinus
ENSLBEG00000017379	lsm5	92	80.357	ENSOCUG00000029043	LSM5	62	80.357	Oryctolagus_cuniculus
ENSLBEG00000017379	lsm5	92	83.929	ENSORLG00020003019	lsm5	55	83.929	Oryzias_latipes_hni
ENSLBEG00000017379	lsm5	92	83.929	ENSORLG00015003338	lsm5	62	83.929	Oryzias_latipes_hsok
ENSLBEG00000017379	lsm5	92	82.143	ENSOMEG00000001078	lsm5	62	82.143	Oryzias_melastigma
ENSLBEG00000017379	lsm5	92	80.357	ENSOGAG00000013892	LSM5	62	80.357	Otolemur_garnettii
ENSLBEG00000017379	lsm5	92	80.357	ENSOARG00000006944	LSM5	62	80.357	Ovis_aries
ENSLBEG00000017379	lsm5	90	87.273	ENSPPAG00000003697	-	86	87.273	Pan_paniscus
ENSLBEG00000017379	lsm5	90	87.273	ENSPPRG00000002550	LSM5	86	87.273	Panthera_pardus
ENSLBEG00000017379	lsm5	90	87.273	ENSPTIG00000015604	LSM5	86	87.273	Panthera_tigris_altaica
ENSLBEG00000017379	lsm5	85	90.385	ENSPTRG00000019057	LSM5	60	90.385	Pan_troglodytes
ENSLBEG00000017379	lsm5	85	90.385	ENSPTRG00000049488	-	60	90.385	Pan_troglodytes
ENSLBEG00000017379	lsm5	90	87.273	ENSPANG00000032179	-	86	87.273	Papio_anubis
ENSLBEG00000017379	lsm5	92	76.786	ENSPANG00000033477	-	62	76.786	Papio_anubis
ENSLBEG00000017379	lsm5	90	78.182	ENSPANG00000032538	-	67	78.182	Papio_anubis
ENSLBEG00000017379	lsm5	92	83.929	ENSPKIG00000011910	lsm5	62	83.929	Paramormyrops_kingsleyae
ENSLBEG00000017379	lsm5	67	80.488	ENSPSIG00000014796	LSM5	55	80.488	Pelodiscus_sinensis
ENSLBEG00000017379	lsm5	77	91.489	ENSPEMG00000019994	-	80	91.489	Peromyscus_maniculatus_bairdii
ENSLBEG00000017379	lsm5	82	62.000	ENSPEMG00000022375	-	61	62.000	Peromyscus_maniculatus_bairdii
ENSLBEG00000017379	lsm5	92	87.500	ENSPFOG00000001433	lsm5	62	87.500	Poecilia_formosa
ENSLBEG00000017379	lsm5	82	100.000	ENSPLAG00000009665	lsm5	55	100.000	Poecilia_latipinna
ENSLBEG00000017379	lsm5	92	87.500	ENSPMEG00000022265	lsm5	62	87.500	Poecilia_mexicana
ENSLBEG00000017379	lsm5	92	83.929	ENSPPYG00000017661	LSM5	62	83.929	Pongo_abelii
ENSLBEG00000017379	lsm5	92	80.357	ENSPCAG00000013740	LSM5	69	80.357	Procavia_capensis
ENSLBEG00000017379	lsm5	92	80.357	ENSPVAG00000009786	LSM5	62	80.357	Pteropus_vampyrus
ENSLBEG00000017379	lsm5	84	86.275	ENSPNYG00000022236	lsm5	58	86.275	Pundamilia_nyererei
ENSLBEG00000017379	lsm5	92	83.929	ENSPNAG00000001887	lsm5	62	83.929	Pygocentrus_nattereri
ENSLBEG00000017379	lsm5	92	80.357	ENSRNOG00000042126	Lsm5	62	80.357	Rattus_norvegicus
ENSLBEG00000017379	lsm5	92	75.439	ENSRNOG00000027305	AABR07065089.1	62	75.439	Rattus_norvegicus
ENSLBEG00000017379	lsm5	92	80.357	ENSRBIG00000030340	-	62	80.357	Rhinopithecus_bieti
ENSLBEG00000017379	lsm5	92	80.357	ENSRBIG00000030714	-	62	80.357	Rhinopithecus_bieti
ENSLBEG00000017379	lsm5	92	80.357	ENSRBIG00000024431	-	62	80.357	Rhinopithecus_bieti
ENSLBEG00000017379	lsm5	85	90.385	ENSRBIG00000027803	-	80	90.385	Rhinopithecus_bieti
ENSLBEG00000017379	lsm5	85	90.385	ENSRROG00000042782	-	80	90.385	Rhinopithecus_roxellana
ENSLBEG00000017379	lsm5	92	80.357	ENSRROG00000023884	-	62	80.357	Rhinopithecus_roxellana
ENSLBEG00000017379	lsm5	92	80.357	ENSRROG00000004655	-	62	80.357	Rhinopithecus_roxellana
ENSLBEG00000017379	lsm5	92	78.571	ENSSBOG00000019124	-	62	78.571	Saimiri_boliviensis_boliviensis
ENSLBEG00000017379	lsm5	92	57.143	ENSSBOG00000034794	-	56	57.143	Saimiri_boliviensis_boliviensis
ENSLBEG00000017379	lsm5	87	90.566	ENSSBOG00000012312	LSM5	83	90.566	Saimiri_boliviensis_boliviensis
ENSLBEG00000017379	lsm5	92	83.929	ENSSFOG00015010099	lsm5	62	83.929	Scleropages_formosus
ENSLBEG00000017379	lsm5	92	85.714	ENSSLDG00000025242	lsm5	62	85.714	Seriola_lalandi_dorsalis
ENSLBEG00000017379	lsm5	77	65.957	ENSSLDG00000008014	-	56	65.957	Seriola_lalandi_dorsalis
ENSLBEG00000017379	lsm5	92	78.571	ENSSARG00000003330	LSM5	62	78.571	Sorex_araneus
ENSLBEG00000017379	lsm5	92	76.786	ENSSPUG00000002690	LSM5	62	76.786	Sphenodon_punctatus
ENSLBEG00000017379	lsm5	92	80.357	ENSSSCG00000026064	-	62	80.357	Sus_scrofa
ENSLBEG00000017379	lsm5	82	82.000	ENSSSCG00000029661	-	69	82.000	Sus_scrofa
ENSLBEG00000017379	lsm5	92	78.571	ENSTGUG00000017539	LSM5	62	78.571	Taeniopygia_guttata
ENSLBEG00000017379	lsm5	84	86.275	ENSTNIG00000008695	lsm5	58	86.275	Tetraodon_nigroviridis
ENSLBEG00000017379	lsm5	92	80.357	ENSTBEG00000004876	LSM5	62	80.357	Tupaia_belangeri
ENSLBEG00000017379	lsm5	92	80.357	ENSTTRG00000004237	LSM5	62	80.357	Tursiops_truncatus
ENSLBEG00000017379	lsm5	85	90.385	ENSUAMG00000009786	LSM5	68	90.385	Ursus_americanus
ENSLBEG00000017379	lsm5	92	80.357	ENSVPAG00000009985	LSM5	62	80.357	Vicugna_pacos
ENSLBEG00000017379	lsm5	92	80.357	ENSVVUG00000021311	LSM5	62	80.357	Vulpes_vulpes
ENSLBEG00000017379	lsm5	92	80.357	ENSXETG00000026465	lsm5	68	80.357	Xenopus_tropicalis
ENSLBEG00000017379	lsm5	92	91.071	ENSXMAG00000029988	lsm5	62	91.071	Xiphophorus_maculatus