EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000017547 (Gene tree)
Gene ID: 109999523
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 6844 bases
Position: chrFKLU01000568.1:133354-140197
Accession: 109999523
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000022959	RRM_1	PF00076.22	9.2e-18	1	1
ENSLBEP00000022931	RRM_1	PF00076.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000024124	-	2151	XM_020654581	ENSLBEP00000022931	404 (aa)	XP_020510237	UPI0009B3B7BC
ENSLBET00000024156	-	1122	-	ENSLBEP00000022959	373 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000017547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000017547's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000017547	rbm42	85	99.128	ENSLBEG00000004578	-	96	99.128

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000017547	rbm42	100	82.152	ENSAPOG00000015109	rbm42	100	84.352	Acanthochromis_polyacanthus
ENSLBEG00000017547	rbm42	100	79.803	ENSACIG00000010771	rbm42	100	79.803	Amphilophus_citrinellus
ENSLBEG00000017547	rbm42	100	83.374	ENSAOCG00000008873	rbm42	100	83.374	Amphiprion_ocellaris
ENSLBEG00000017547	rbm42	100	83.374	ENSAPEG00000012051	rbm42	99	83.374	Amphiprion_percula
ENSLBEG00000017547	rbm42	100	81.418	ENSATEG00000000536	rbm42	100	80.685	Anabas_testudineus
ENSLBEG00000017547	rbm42	100	83.088	ENSACLG00000004988	rbm42	100	81.373	Astatotilapia_calliptera
ENSLBEG00000017547	rbm42	100	73.861	ENSAMXG00000016545	rbm42	100	73.671	Astyanax_mexicanus
ENSLBEG00000017547	rbm42	97	80.000	ENSCSEG00000010248	rbm42	100	80.000	Cynoglossus_semilaevis
ENSLBEG00000017547	rbm42	100	77.616	ENSCVAG00000015589	rbm42	100	76.513	Cyprinodon_variegatus
ENSLBEG00000017547	rbm42	100	68.571	ENSDARG00000039910	rbm42	100	71.463	Danio_rerio
ENSLBEG00000017547	rbm42	100	72.664	ENSELUG00000022403	rbm42	100	68.578	Esox_lucius
ENSLBEG00000017547	rbm42	65	77.903	ENSFHEG00000006764	rbm42	91	77.656	Fundulus_heteroclitus
ENSLBEG00000017547	rbm42	100	70.702	ENSGMOG00000012660	rbm42	100	73.286	Gadus_morhua
ENSLBEG00000017547	rbm42	77	74.841	ENSGAFG00000009059	rbm42	100	77.143	Gambusia_affinis
ENSLBEG00000017547	rbm42	100	84.975	ENSGACG00000004170	rbm42	100	84.975	Gasterosteus_aculeatus
ENSLBEG00000017547	rbm42	100	82.843	ENSHBUG00000011141	rbm42	100	81.127	Haplochromis_burtoni
ENSLBEG00000017547	rbm42	100	77.751	ENSHCOG00000021214	rbm42	100	73.671	Hippocampus_comes
ENSLBEG00000017547	rbm42	100	72.619	ENSIPUG00000022365	rbm42	99	68.372	Ictalurus_punctatus
ENSLBEG00000017547	rbm42	91	75.668	ENSKMAG00000015287	rbm42	99	73.529	Kryptolebias_marmoratus
ENSLBEG00000017547	rbm42	100	66.983	ENSLOCG00000003368	rbm42	100	66.033	Lepisosteus_oculatus
ENSLBEG00000017547	rbm42	100	80.685	ENSMAMG00000006708	rbm42	100	80.685	Mastacembelus_armatus
ENSLBEG00000017547	rbm42	100	83.088	ENSMZEG00005025234	rbm42	100	81.373	Maylandia_zebra
ENSLBEG00000017547	rbm42	91	83.065	ENSMALG00000015720	rbm42	100	82.796	Monopterus_albus
ENSLBEG00000017547	rbm42	100	82.482	ENSONIG00000008029	rbm42	100	81.265	Oreochromis_niloticus
ENSLBEG00000017547	rbm42	100	62.708	ENSORLG00020022507	rbm42	100	62.791	Oryzias_latipes_hni
ENSLBEG00000017547	rbm42	100	75.550	ENSORLG00015000659	rbm42	100	77.451	Oryzias_latipes_hsok
ENSLBEG00000017547	rbm42	63	81.250	ENSOMEG00000014332	rbm42	81	89.767	Oryzias_melastigma
ENSLBEG00000017547	rbm42	100	71.703	ENSPKIG00000015165	rbm42	100	71.154	Paramormyrops_kingsleyae
ENSLBEG00000017547	rbm42	63	77.778	ENSPSIG00000013935	-	55	85.246	Pelodiscus_sinensis
ENSLBEG00000017547	rbm42	91	65.918	ENSPMGG00000003569	rbm42	100	97.143	Periophthalmus_magnuspinnatus
ENSLBEG00000017547	rbm42	52	57.604	ENSPMAG00000008633	rbm42	100	49.862	Petromyzon_marinus
ENSLBEG00000017547	rbm42	100	75.426	ENSPFOG00000007701	rbm42	100	76.699	Poecilia_formosa
ENSLBEG00000017547	rbm42	100	75.426	ENSPLAG00000009405	rbm42	100	76.699	Poecilia_latipinna
ENSLBEG00000017547	rbm42	100	75.669	ENSPMEG00000010375	rbm42	100	76.942	Poecilia_mexicana
ENSLBEG00000017547	rbm42	100	75.669	ENSPREG00000018102	rbm42	100	76.942	Poecilia_reticulata
ENSLBEG00000017547	rbm42	100	82.843	ENSPNYG00000014460	rbm42	100	81.127	Pundamilia_nyererei
ENSLBEG00000017547	rbm42	100	73.159	ENSPNAG00000009961	rbm42	100	71.667	Pygocentrus_nattereri
ENSLBEG00000017547	rbm42	100	69.767	ENSSFOG00015019227	rbm42	100	68.333	Scleropages_formosus
ENSLBEG00000017547	rbm42	100	83.659	ENSSMAG00000011935	rbm42	100	83.902	Scophthalmus_maximus
ENSLBEG00000017547	rbm42	100	85.575	ENSSDUG00000004033	rbm42	100	85.086	Seriola_dumerili
ENSLBEG00000017547	rbm42	100	76.790	ENSSLDG00000009918	rbm42	100	83.951	Seriola_lalandi_dorsalis
ENSLBEG00000017547	rbm42	100	83.374	ENSSPAG00000019871	rbm42	100	83.374	Stegastes_partitus
ENSLBEG00000017547	rbm42	100	76.355	ENSTRUG00000024586	-	76	78.272	Takifugu_rubripes
ENSLBEG00000017547	rbm42	99	67.929	ENSTNIG00000011669	rbm42	100	66.667	Tetraodon_nigroviridis
ENSLBEG00000017547	rbm42	100	56.858	ENSXETG00000017599	rbm42	100	57.143	Xenopus_tropicalis
ENSLBEG00000017547	rbm42	100	74.939	ENSXMAG00000012827	rbm42	100	76.214	Xiphophorus_maculatus