EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000018656 (Gene tree)
Gene ID: 109980803
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 22240 bases
Position: chrFKLU01000002.1:3336058-3358297
Accession: 109980803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000024551	XRN_N	PF03159.18	2.2e-95	1	1
ENSLBEP00000024574	XRN_N	PF03159.18	3.1e-47	1	1
ENSLBEP00000024583	XRN_N	PF03159.18	1e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000025815	-	4968	XM_020629318	ENSLBEP00000024551	1655 (aa)	XP_020484974	-
ENSLBET00000025847	-	321	-	ENSLBEP00000024583	106 (aa)	-	-
ENSLBET00000025838	-	1494	-	ENSLBEP00000024574	497 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000018656's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000018656's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000018656	xrn1	95	57.426	ENSLBEG00000010041	xrn2	92	57.426

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000018656	xrn1	99	95.238	ENSG00000114127	XRN1	98	95.238	Homo_sapiens
ENSLBEG00000018656	xrn1	97	100.000	ENSAPOG00000000622	xrn1	98	88.066	Acanthochromis_polyacanthus
ENSLBEG00000018656	xrn1	97	96.117	ENSAMEG00000012538	XRN1	94	69.773	Ailuropoda_melanoleuca
ENSLBEG00000018656	xrn1	98	97.115	ENSACIG00000001057	xrn1	98	86.628	Amphilophus_citrinellus
ENSLBEG00000018656	xrn1	97	100.000	ENSAOCG00000014097	xrn1	100	81.341	Amphiprion_ocellaris
ENSLBEG00000018656	xrn1	97	100.000	ENSAPEG00000006620	xrn1	96	93.478	Amphiprion_percula
ENSLBEG00000018656	xrn1	97	99.029	ENSATEG00000009752	xrn1	99	82.160	Anabas_testudineus
ENSLBEG00000018656	xrn1	74	97.436	ENSAPLG00000004905	XRN1	100	59.350	Anas_platyrhynchos
ENSLBEG00000018656	xrn1	97	97.087	ENSACAG00000004985	XRN1	95	70.195	Anolis_carolinensis
ENSLBEG00000018656	xrn1	97	96.117	ENSANAG00000029013	XRN1	99	72.703	Aotus_nancymaae
ENSLBEG00000018656	xrn1	97	99.029	ENSACLG00000004806	xrn1	99	78.366	Astatotilapia_calliptera
ENSLBEG00000018656	xrn1	97	98.058	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSLBEG00000018656	xrn1	97	96.117	ENSBTAG00000011524	XRN1	100	59.650	Bos_taurus
ENSLBEG00000018656	xrn1	96	79.412	WBGene00012730	xrn-1	75	58.810	Caenorhabditis_elegans
ENSLBEG00000018656	xrn1	97	96.117	ENSCJAG00000001872	XRN1	99	62.079	Callithrix_jacchus
ENSLBEG00000018656	xrn1	97	96.117	ENSCAFG00000007783	XRN1	94	70.408	Canis_familiaris
ENSLBEG00000018656	xrn1	97	96.117	ENSCAFG00020009120	XRN1	99	75.316	Canis_lupus_dingo
ENSLBEG00000018656	xrn1	97	96.117	ENSCHIG00000019192	XRN1	99	59.560	Capra_hircus
ENSLBEG00000018656	xrn1	97	96.117	ENSTSYG00000002705	XRN1	100	60.193	Carlito_syrichta
ENSLBEG00000018656	xrn1	74	94.872	ENSCAPG00000004604	-	99	62.355	Cavia_aperea
ENSLBEG00000018656	xrn1	97	96.117	ENSCPOG00000035199	-	100	96.117	Cavia_porcellus
ENSLBEG00000018656	xrn1	97	96.117	ENSCCAG00000034800	XRN1	99	77.266	Cebus_capucinus
ENSLBEG00000018656	xrn1	97	96.117	ENSCATG00000041794	XRN1	100	59.875	Cercocebus_atys
ENSLBEG00000018656	xrn1	97	96.117	ENSCLAG00000001451	XRN1	99	77.742	Chinchilla_lanigera
ENSLBEG00000018656	xrn1	97	96.117	ENSCSAG00000011265	XRN1	100	59.741	Chlorocebus_sabaeus
ENSLBEG00000018656	xrn1	73	94.805	ENSCHOG00000013961	-	51	94.805	Choloepus_hoffmanni
ENSLBEG00000018656	xrn1	97	86.408	ENSCING00000001334	-	95	71.816	Ciona_intestinalis
ENSLBEG00000018656	xrn1	97	87.379	ENSCSAVG00000008584	-	93	51.327	Ciona_savignyi
ENSLBEG00000018656	xrn1	97	96.117	ENSCANG00000037495	XRN1	99	77.266	Colobus_angolensis_palliatus
ENSLBEG00000018656	xrn1	97	96.117	ENSCGRG00001019411	Xrn1	99	77.742	Cricetulus_griseus_chok1gshd
ENSLBEG00000018656	xrn1	97	96.117	ENSCGRG00000012464	Xrn1	99	77.742	Cricetulus_griseus_crigri
ENSLBEG00000018656	xrn1	97	100.000	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSLBEG00000018656	xrn1	97	99.029	ENSCVAG00000013089	xrn1	99	85.394	Cyprinodon_variegatus
ENSLBEG00000018656	xrn1	97	100.000	ENSDARG00000091652	xrn1	100	81.893	Danio_rerio
ENSLBEG00000018656	xrn1	97	95.146	ENSDNOG00000034202	-	100	95.146	Dasypus_novemcinctus
ENSLBEG00000018656	xrn1	97	90.291	ENSDORG00000013833	Xrn1	100	59.730	Dipodomys_ordii
ENSLBEG00000018656	xrn1	99	69.524	FBgn0020261	pcm	72	41.225	Drosophila_melanogaster
ENSLBEG00000018656	xrn1	74	94.872	ENSETEG00000003978	XRN1	82	69.421	Echinops_telfairi
ENSLBEG00000018656	xrn1	97	96.117	ENSEASG00005002687	XRN1	99	77.901	Equus_asinus_asinus
ENSLBEG00000018656	xrn1	97	96.117	ENSECAG00000008301	XRN1	100	60.694	Equus_caballus
ENSLBEG00000018656	xrn1	97	96.117	ENSEEUG00000011323	XRN1	85	65.166	Erinaceus_europaeus
ENSLBEG00000018656	xrn1	97	100.000	ENSELUG00000000169	xrn1	100	70.924	Esox_lucius
ENSLBEG00000018656	xrn1	99	94.286	ENSFCAG00000027589	XRN1	99	78.242	Felis_catus
ENSLBEG00000018656	xrn1	97	95.146	ENSFALG00000007021	XRN1	94	70.262	Ficedula_albicollis
ENSLBEG00000018656	xrn1	97	96.117	ENSFDAG00000020494	XRN1	99	77.901	Fukomys_damarensis
ENSLBEG00000018656	xrn1	97	99.029	ENSFHEG00000017255	-	100	99.029	Fundulus_heteroclitus
ENSLBEG00000018656	xrn1	94	78.801	ENSFHEG00000017356	-	98	78.158	Fundulus_heteroclitus
ENSLBEG00000018656	xrn1	97	98.058	ENSGMOG00000006396	xrn1	84	75.997	Gadus_morhua
ENSLBEG00000018656	xrn1	97	96.117	ENSGALG00000002706	XRN1	95	69.823	Gallus_gallus
ENSLBEG00000018656	xrn1	97	98.058	ENSGAFG00000006293	-	100	98.058	Gambusia_affinis
ENSLBEG00000018656	xrn1	97	100.000	ENSGACG00000014328	xrn1	95	85.412	Gasterosteus_aculeatus
ENSLBEG00000018656	xrn1	97	94.175	ENSGAGG00000017535	XRN1	94	70.231	Gopherus_agassizii
ENSLBEG00000018656	xrn1	97	96.117	ENSGGOG00000008047	XRN1	100	60.456	Gorilla_gorilla
ENSLBEG00000018656	xrn1	98	98.077	ENSHBUG00000005908	xrn1	98	80.665	Haplochromis_burtoni
ENSLBEG00000018656	xrn1	97	96.117	ENSHGLG00000014476	XRN1	99	77.583	Heterocephalus_glaber_female
ENSLBEG00000018656	xrn1	97	96.117	ENSHGLG00100015130	XRN1	99	77.583	Heterocephalus_glaber_male
ENSLBEG00000018656	xrn1	97	100.000	ENSHCOG00000014062	xrn1	99	83.388	Hippocampus_comes
ENSLBEG00000018656	xrn1	97	100.000	ENSHCOG00000013992	-	90	100.000	Hippocampus_comes
ENSLBEG00000018656	xrn1	97	99.029	ENSIPUG00000015229	xrn1	100	68.862	Ictalurus_punctatus
ENSLBEG00000018656	xrn1	97	96.117	ENSSTOG00000013552	XRN1	99	77.424	Ictidomys_tridecemlineatus
ENSLBEG00000018656	xrn1	74	94.872	ENSJJAG00000010863	Xrn1	99	77.446	Jaculus_jaculus
ENSLBEG00000018656	xrn1	97	98.058	ENSKMAG00000021356	xrn1	95	86.081	Kryptolebias_marmoratus
ENSLBEG00000018656	xrn1	97	98.058	ENSLACG00000009020	XRN1	100	60.158	Latimeria_chalumnae
ENSLBEG00000018656	xrn1	97	100.000	ENSLOCG00000007944	xrn1	100	74.653	Lepisosteus_oculatus
ENSLBEG00000018656	xrn1	97	96.117	ENSLAFG00000015426	XRN1	99	72.915	Loxodonta_africana
ENSLBEG00000018656	xrn1	97	96.117	ENSMFAG00000032599	XRN1	100	59.762	Macaca_fascicularis
ENSLBEG00000018656	xrn1	97	96.117	ENSMMUG00000014038	XRN1	100	59.762	Macaca_mulatta
ENSLBEG00000018656	xrn1	97	96.117	ENSMNEG00000034217	XRN1	100	60.364	Macaca_nemestrina
ENSLBEG00000018656	xrn1	99	94.286	ENSMLEG00000041349	-	99	77.753	Mandrillus_leucophaeus
ENSLBEG00000018656	xrn1	97	99.029	ENSMAMG00000013219	xrn1	94	87.158	Mastacembelus_armatus
ENSLBEG00000018656	xrn1	97	99.029	ENSMZEG00005015099	xrn1	99	78.078	Maylandia_zebra
ENSLBEG00000018656	xrn1	75	97.500	ENSMGAG00000006333	XRN1	100	58.917	Meleagris_gallopavo
ENSLBEG00000018656	xrn1	97	96.117	ENSMAUG00000014268	-	97	96.117	Mesocricetus_auratus
ENSLBEG00000018656	xrn1	99	95.238	ENSMICG00000048948	XRN1	98	95.238	Microcebus_murinus
ENSLBEG00000018656	xrn1	97	96.117	ENSMOCG00000008665	Xrn1	99	77.107	Microtus_ochrogaster
ENSLBEG00000018656	xrn1	92	83.836	ENSMMOG00000020896	-	96	81.051	Mola_mola
ENSLBEG00000018656	xrn1	97	96.117	ENSMODG00000021236	XRN1	100	59.560	Monodelphis_domestica
ENSLBEG00000018656	xrn1	97	99.029	ENSMALG00000004098	xrn1	100	76.564	Monopterus_albus
ENSLBEG00000018656	xrn1	97	96.117	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSLBEG00000018656	xrn1	97	96.117	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSLBEG00000018656	xrn1	97	96.117	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSLBEG00000018656	xrn1	97	96.117	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSLBEG00000018656	xrn1	97	96.117	ENSMPUG00000012040	XRN1	100	60.202	Mustela_putorius_furo
ENSLBEG00000018656	xrn1	99	94.286	ENSMLUG00000016885	XRN1	100	59.310	Myotis_lucifugus
ENSLBEG00000018656	xrn1	97	95.146	ENSNGAG00000023964	Xrn1	99	74.281	Nannospalax_galili
ENSLBEG00000018656	xrn1	98	98.077	ENSNBRG00000001531	-	100	98.077	Neolamprologus_brichardi
ENSLBEG00000018656	xrn1	97	96.117	ENSNLEG00000004726	XRN1	100	60.456	Nomascus_leucogenys
ENSLBEG00000018656	xrn1	97	97.087	ENSMEUG00000014473	-	64	97.087	Notamacropus_eugenii
ENSLBEG00000018656	xrn1	97	97.087	ENSOPRG00000007337	-	63	67.147	Ochotona_princeps
ENSLBEG00000018656	xrn1	97	96.117	ENSODEG00000008804	-	100	96.117	Octodon_degus
ENSLBEG00000018656	xrn1	97	99.029	ENSONIG00000016673	xrn1	99	81.168	Oreochromis_niloticus
ENSLBEG00000018656	xrn1	85	74.083	ENSOANG00000006735	XRN1	100	56.315	Ornithorhynchus_anatinus
ENSLBEG00000018656	xrn1	97	97.087	ENSOCUG00000001861	XRN1	94	70.676	Oryctolagus_cuniculus
ENSLBEG00000018656	xrn1	97	100.000	ENSORLG00000013005	xrn1	98	76.847	Oryzias_latipes
ENSLBEG00000018656	xrn1	97	100.000	ENSORLG00020005559	xrn1	100	76.505	Oryzias_latipes_hni
ENSLBEG00000018656	xrn1	97	100.000	ENSORLG00015022523	xrn1	100	76.847	Oryzias_latipes_hsok
ENSLBEG00000018656	xrn1	97	100.000	ENSOMEG00000015397	xrn1	99	86.113	Oryzias_melastigma
ENSLBEG00000018656	xrn1	97	96.117	ENSOGAG00000000170	XRN1	100	57.649	Otolemur_garnettii
ENSLBEG00000018656	xrn1	99	94.286	ENSOARG00000006343	XRN1	99	59.774	Ovis_aries
ENSLBEG00000018656	xrn1	97	95.146	ENSPPAG00000010180	XRN1	100	60.604	Pan_paniscus
ENSLBEG00000018656	xrn1	97	96.117	ENSPPRG00000007125	XRN1	100	60.352	Panthera_pardus
ENSLBEG00000018656	xrn1	97	96.117	ENSPTIG00000021081	XRN1	100	60.182	Panthera_tigris_altaica
ENSLBEG00000018656	xrn1	97	95.146	ENSPTRG00000015482	XRN1	100	60.410	Pan_troglodytes
ENSLBEG00000018656	xrn1	97	96.117	ENSPANG00000010638	XRN1	100	59.705	Papio_anubis
ENSLBEG00000018656	xrn1	100	98.113	ENSPKIG00000011903	-	81	98.113	Paramormyrops_kingsleyae
ENSLBEG00000018656	xrn1	97	94.175	ENSPSIG00000018050	XRN1	100	60.584	Pelodiscus_sinensis
ENSLBEG00000018656	xrn1	99	98.095	ENSPMGG00000002648	xrn1	99	87.299	Periophthalmus_magnuspinnatus
ENSLBEG00000018656	xrn1	97	96.117	ENSPEMG00000020610	Xrn1	99	77.266	Peromyscus_maniculatus_bairdii
ENSLBEG00000018656	xrn1	75	91.139	ENSPMAG00000002975	xrn1	90	76.149	Petromyzon_marinus
ENSLBEG00000018656	xrn1	99	95.238	ENSPCIG00000028735	XRN1	99	78.344	Phascolarctos_cinereus
ENSLBEG00000018656	xrn1	97	99.029	ENSPFOG00000013932	xrn1	99	79.681	Poecilia_formosa
ENSLBEG00000018656	xrn1	97	99.029	ENSPLAG00000021653	xrn1	99	79.808	Poecilia_latipinna
ENSLBEG00000018656	xrn1	97	99.029	ENSPMEG00000003076	xrn1	95	80.092	Poecilia_mexicana
ENSLBEG00000018656	xrn1	97	99.029	ENSPREG00000021147	xrn1	100	76.888	Poecilia_reticulata
ENSLBEG00000018656	xrn1	97	96.117	ENSPPYG00000014172	XRN1	100	60.249	Pongo_abelii
ENSLBEG00000018656	xrn1	91	78.038	ENSPCAG00000005638	XRN1	91	65.675	Procavia_capensis
ENSLBEG00000018656	xrn1	97	96.117	ENSPCOG00000013089	XRN1	99	77.107	Propithecus_coquereli
ENSLBEG00000018656	xrn1	97	96.117	ENSPVAG00000016265	XRN1	82	84.971	Pteropus_vampyrus
ENSLBEG00000018656	xrn1	97	99.029	ENSPNYG00000010570	xrn1	99	78.400	Pundamilia_nyererei
ENSLBEG00000018656	xrn1	97	98.058	ENSPNAG00000023531	xrn1	100	67.979	Pygocentrus_nattereri
ENSLBEG00000018656	xrn1	97	96.117	ENSRNOG00000042951	Xrn1	100	59.502	Rattus_norvegicus
ENSLBEG00000018656	xrn1	97	96.117	ENSRBIG00000041227	XRN1	100	59.194	Rhinopithecus_bieti
ENSLBEG00000018656	xrn1	99	94.286	ENSRROG00000033764	-	100	96.117	Rhinopithecus_roxellana
ENSLBEG00000018656	xrn1	97	63.107	YGL173C	XRN1	72	52.446	Saccharomyces_cerevisiae
ENSLBEG00000018656	xrn1	97	96.117	ENSSBOG00000029561	XRN1	100	60.363	Saimiri_boliviensis_boliviensis
ENSLBEG00000018656	xrn1	94	76.860	ENSSHAG00000016207	XRN1	100	59.507	Sarcophilus_harrisii
ENSLBEG00000018656	xrn1	97	99.029	ENSSFOG00015024211	xrn1	100	67.349	Scleropages_formosus
ENSLBEG00000018656	xrn1	97	100.000	ENSSMAG00000016534	xrn1	99	85.101	Scophthalmus_maximus
ENSLBEG00000018656	xrn1	97	100.000	ENSSDUG00000010306	xrn1	97	88.825	Seriola_dumerili
ENSLBEG00000018656	xrn1	97	100.000	ENSSLDG00000021543	xrn1	99	87.324	Seriola_lalandi_dorsalis
ENSLBEG00000018656	xrn1	91	76.759	ENSSARG00000007741	-	75	67.149	Sorex_araneus
ENSLBEG00000018656	xrn1	97	96.117	ENSSPUG00000010754	-	100	96.117	Sphenodon_punctatus
ENSLBEG00000018656	xrn1	95	76.141	ENSSPUG00000010779	-	95	77.542	Sphenodon_punctatus
ENSLBEG00000018656	xrn1	95	85.773	ENSSPAG00000009856	-	95	85.832	Stegastes_partitus
ENSLBEG00000018656	xrn1	97	94.175	ENSTGUG00000008498	XRN1	100	60.362	Taeniopygia_guttata
ENSLBEG00000018656	xrn1	97	97.087	ENSTRUG00000004895	xrn1	99	85.595	Takifugu_rubripes
ENSLBEG00000018656	xrn1	96	98.039	ENSTNIG00000017615	xrn1	100	73.174	Tetraodon_nigroviridis
ENSLBEG00000018656	xrn1	97	96.117	ENSTBEG00000003256	XRN1	78	83.077	Tupaia_belangeri
ENSLBEG00000018656	xrn1	97	88.350	ENSTTRG00000012914	XRN1	100	56.835	Tursiops_truncatus
ENSLBEG00000018656	xrn1	97	96.117	ENSUAMG00000001608	XRN1	99	74.245	Ursus_americanus
ENSLBEG00000018656	xrn1	97	96.117	ENSUMAG00000013625	XRN1	94	70.094	Ursus_maritimus
ENSLBEG00000018656	xrn1	97	96.117	ENSVPAG00000004690	XRN1	100	58.456	Vicugna_pacos
ENSLBEG00000018656	xrn1	97	96.117	ENSVVUG00000024461	XRN1	99	79.657	Vulpes_vulpes
ENSLBEG00000018656	xrn1	99	95.238	ENSXETG00000000619	xrn1	99	86.089	Xenopus_tropicalis
ENSLBEG00000018656	xrn1	97	99.029	ENSXCOG00000007917	xrn1	100	75.088	Xiphophorus_couchianus
ENSLBEG00000018656	xrn1	97	99.029	ENSXMAG00000018320	xrn1	98	86.153	Xiphophorus_maculatus