EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000019073 (Gene tree)
Gene ID: 109996622
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 7411 bases
Position: chrFKLU01000375.1:445896-453306
Accession: 109996622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000024959	RRM_1	PF00076.22	1.1e-62	1	4
ENSLBEP00000024959	RRM_1	PF00076.22	1.1e-62	2	4
ENSLBEP00000024959	RRM_1	PF00076.22	1.1e-62	3	4
ENSLBEP00000024959	RRM_1	PF00076.22	1.1e-62	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000026225	-	2280	XM_020650843	ENSLBEP00000024959	670 (aa)	XP_020506499	UPI0009B35354

Gene Model

Click here to download ENSLBEG00000019073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000019073's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000019073	ncl	61	42.453	ENSLBEG00000007915	-	66	43.223
ENSLBEG00000019073	ncl	51	31.928	ENSLBEG00000024002	-	59	31.792
ENSLBEG00000019073	ncl	55	42.597	ENSLBEG00000014278	-	82	43.169
ENSLBEG00000019073	ncl	51	31.928	ENSLBEG00000026845	pabpc1b	59	31.792
ENSLBEG00000019073	ncl	51	31.928	ENSLBEG00000013654	pabpc4	58	31.928

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000019073	ncl	56	90.133	ENSAPOG00000023888	ncl	59	89.048	Acanthochromis_polyacanthus
ENSLBEG00000019073	ncl	73	37.843	ENSAPOG00000014534	-	67	40.921	Acanthochromis_polyacanthus
ENSLBEG00000019073	ncl	76	78.723	ENSACIG00000013234	ncl	62	78.933	Amphilophus_citrinellus
ENSLBEG00000019073	ncl	56	90.133	ENSAOCG00000003133	ncl	60	87.915	Amphiprion_ocellaris
ENSLBEG00000019073	ncl	72	36.821	ENSAOCG00000014792	-	61	40.568	Amphiprion_ocellaris
ENSLBEG00000019073	ncl	72	37.275	ENSAPEG00000013612	-	60	40.827	Amphiprion_percula
ENSLBEG00000019073	ncl	62	87.886	ENSAPEG00000002769	ncl	59	88.361	Amphiprion_percula
ENSLBEG00000019073	ncl	67	83.550	ENSATEG00000013343	ncl	60	88.095	Anabas_testudineus
ENSLBEG00000019073	ncl	71	42.020	ENSATEG00000019862	-	80	45.220	Anabas_testudineus
ENSLBEG00000019073	ncl	55	58.221	ENSAPLG00000012897	-	62	58.933	Anas_platyrhynchos
ENSLBEG00000019073	ncl	56	62.597	ENSACAG00000001006	-	52	62.500	Anolis_carolinensis
ENSLBEG00000019073	ncl	56	78.846	ENSACLG00000026031	ncl	85	78.846	Astatotilapia_calliptera
ENSLBEG00000019073	ncl	56	69.496	ENSAMXG00000001647	ncl	82	72.517	Astyanax_mexicanus
ENSLBEG00000019073	ncl	52	41.880	ENSCHIG00000012665	-	51	42.192	Capra_hircus
ENSLBEG00000019073	ncl	67	56.785	ENSCPBG00000016444	-	67	61.008	Chrysemys_picta_bellii
ENSLBEG00000019073	ncl	63	85.117	ENSCSEG00000015089	ncl	64	84.086	Cynoglossus_semilaevis
ENSLBEG00000019073	ncl	56	83.065	ENSCVAG00000012600	ncl	61	81.818	Cyprinodon_variegatus
ENSLBEG00000019073	ncl	62	75.656	ENSDARG00000002710	ncl	83	77.670	Danio_rerio
ENSLBEG00000019073	ncl	58	45.524	ENSDNOG00000040257	-	63	44.531	Dasypus_novemcinctus
ENSLBEG00000019073	ncl	59	41.250	ENSDNOG00000031611	-	68	42.520	Dasypus_novemcinctus
ENSLBEG00000019073	ncl	65	48.559	ENSEBUG00000016173	ncl	55	48.492	Eptatretus_burgeri
ENSLBEG00000019073	ncl	63	48.122	ENSELUG00000022826	-	81	50.133	Esox_lucius
ENSLBEG00000019073	ncl	62	74.057	ENSELUG00000006033	ncl	63	74.764	Esox_lucius
ENSLBEG00000019073	ncl	56	79.200	ENSFHEG00000018000	ncl	65	77.857	Fundulus_heteroclitus
ENSLBEG00000019073	ncl	63	70.726	ENSGMOG00000001341	ncl	66	70.476	Gadus_morhua
ENSLBEG00000019073	ncl	55	59.574	ENSGALG00000032930	NCL	54	59.574	Gallus_gallus
ENSLBEG00000019073	ncl	57	81.890	ENSGAFG00000015375	ncl	58	81.412	Gambusia_affinis
ENSLBEG00000019073	ncl	88	76.183	ENSGACG00000008970	ncl	66	80.769	Gasterosteus_aculeatus
ENSLBEG00000019073	ncl	55	60.847	ENSGAGG00000013330	-	55	60.743	Gopherus_agassizii
ENSLBEG00000019073	ncl	56	81.183	ENSHBUG00000006869	ncl	60	79.147	Haplochromis_burtoni
ENSLBEG00000019073	ncl	56	85.638	ENSHCOG00000010234	ncl	61	82.488	Hippocampus_comes
ENSLBEG00000019073	ncl	55	75.817	ENSIPUG00000024556	ncl	81	75.817	Ictalurus_punctatus
ENSLBEG00000019073	ncl	62	84.375	ENSKMAG00000008111	ncl	59	83.894	Kryptolebias_marmoratus
ENSLBEG00000019073	ncl	62	63.357	ENSLACG00000009328	ncl	62	63.333	Latimeria_chalumnae
ENSLBEG00000019073	ncl	60	50.370	ENSLACG00000022167	-	79	52.291	Latimeria_chalumnae
ENSLBEG00000019073	ncl	53	70.112	ENSLOCG00000004828	ncl	57	67.689	Lepisosteus_oculatus
ENSLBEG00000019073	ncl	59	40.678	ENSMAMG00000003479	-	69	40.885	Mastacembelus_armatus
ENSLBEG00000019073	ncl	56	81.183	ENSMZEG00005017438	ncl	60	80.238	Maylandia_zebra
ENSLBEG00000019073	ncl	55	59.239	ENSMGAG00000008147	-	88	59.239	Meleagris_gallopavo
ENSLBEG00000019073	ncl	52	89.423	ENSMMOG00000008553	ncl	85	89.423	Mola_mola
ENSLBEG00000019073	ncl	55	56.430	ENSMODG00000002470	-	53	56.397	Monodelphis_domestica
ENSLBEG00000019073	ncl	82	70.798	ENSMALG00000014827	ncl	65	86.364	Monopterus_albus
ENSLBEG00000019073	ncl	55	81.560	ENSNBRG00000000146	-	86	81.560	Neolamprologus_brichardi
ENSLBEG00000019073	ncl	55	81.560	ENSNBRG00000001232	ncl	82	81.560	Neolamprologus_brichardi
ENSLBEG00000019073	ncl	59	57.985	ENSMEUG00000012335	-	58	58.065	Notamacropus_eugenii
ENSLBEG00000019073	ncl	55	53.571	ENSONIG00000010631	-	97	36.702	Oreochromis_niloticus
ENSLBEG00000019073	ncl	56	81.183	ENSONIG00000012508	ncl	59	80.048	Oreochromis_niloticus
ENSLBEG00000019073	ncl	56	60.104	ENSOANG00000008732	-	61	60.513	Ornithorhynchus_anatinus
ENSLBEG00000019073	ncl	58	38.404	ENSORLG00000004645	-	83	39.164	Oryzias_latipes
ENSLBEG00000019073	ncl	59	37.990	ENSORLG00020003497	-	74	39.164	Oryzias_latipes_hni
ENSLBEG00000019073	ncl	60	38.015	ENSORLG00015006613	-	77	39.164	Oryzias_latipes_hsok
ENSLBEG00000019073	ncl	63	78.774	ENSORLG00015013815	ncl	87	85.256	Oryzias_latipes_hsok
ENSLBEG00000019073	ncl	58	38.060	ENSOMEG00000015864	-	82	38.442	Oryzias_melastigma
ENSLBEG00000019073	ncl	62	78.622	ENSPKIG00000002604	ncl	59	78.520	Paramormyrops_kingsleyae
ENSLBEG00000019073	ncl	62	78.897	ENSPMGG00000004709	ncl	84	82.085	Periophthalmus_magnuspinnatus
ENSLBEG00000019073	ncl	59	57.317	ENSPCIG00000003293	-	57	57.317	Phascolarctos_cinereus
ENSLBEG00000019073	ncl	68	78.280	ENSPFOG00000024205	ncl	58	81.925	Poecilia_formosa
ENSLBEG00000019073	ncl	68	77.802	ENSPLAG00000024026	ncl	58	81.176	Poecilia_latipinna
ENSLBEG00000019073	ncl	68	78.448	ENSPMEG00000006000	ncl	58	81.647	Poecilia_mexicana
ENSLBEG00000019073	ncl	56	81.183	ENSPNYG00000020494	ncl	60	80.238	Pundamilia_nyererei
ENSLBEG00000019073	ncl	62	71.190	ENSPNAG00000006192	ncl	58	71.801	Pygocentrus_nattereri
ENSLBEG00000019073	ncl	55	52.000	ENSSHAG00000002702	-	73	47.992	Sarcophilus_harrisii
ENSLBEG00000019073	ncl	57	52.140	ENSSHAG00000007489	-	66	52.140	Sarcophilus_harrisii
ENSLBEG00000019073	ncl	68	71.806	ENSSFOG00015008583	ncl	68	77.880	Scleropages_formosus
ENSLBEG00000019073	ncl	54	44.512	ENSSFOG00015013153	-	78	45.455	Scleropages_formosus
ENSLBEG00000019073	ncl	62	42.459	ENSSMAG00000007582	-	68	44.048	Scophthalmus_maximus
ENSLBEG00000019073	ncl	62	87.234	ENSSMAG00000021241	ncl	60	87.707	Scophthalmus_maximus
ENSLBEG00000019073	ncl	94	81.944	ENSSDUG00000006128	ncl	86	90.933	Seriola_dumerili
ENSLBEG00000019073	ncl	60	43.511	ENSSDUG00000010922	-	81	43.490	Seriola_dumerili
ENSLBEG00000019073	ncl	56	43.478	ENSSLDG00000015784	-	65	43.455	Seriola_lalandi_dorsalis
ENSLBEG00000019073	ncl	63	89.810	ENSSLDG00000002012	ncl	60	89.713	Seriola_lalandi_dorsalis
ENSLBEG00000019073	ncl	55	57.949	ENSSPUG00000008244	-	58	58.747	Sphenodon_punctatus
ENSLBEG00000019073	ncl	60	41.404	ENSSPAG00000001859	-	61	41.775	Stegastes_partitus
ENSLBEG00000019073	ncl	54	90.426	ENSSPAG00000002637	ncl	82	90.426	Stegastes_partitus
ENSLBEG00000019073	ncl	55	55.897	ENSTGUG00000009782	-	60	57.632	Taeniopygia_guttata
ENSLBEG00000019073	ncl	88	68.333	ENSTRUG00000008185	ncl	62	81.043	Takifugu_rubripes
ENSLBEG00000019073	ncl	56	60.422	ENSXETG00000009517	ncl	54	61.214	Xenopus_tropicalis
ENSLBEG00000019073	ncl	57	40.513	ENSXCOG00000007369	-	89	41.053	Xiphophorus_couchianus
ENSLBEG00000019073	ncl	58	50.000	ENSXCOG00000003524	ncl	88	63.588	Xiphophorus_couchianus
ENSLBEG00000019073	ncl	57	83.202	ENSXMAG00000005914	ncl	58	82.243	Xiphophorus_maculatus