EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000019756 (Gene tree)
Gene ID: 109995550
Gene Symbol: -
Alias: rbm4l|wu:fc25a01
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 4443 bases
Position: chrFKLU01000327.1:343552-347994
Accession: 109995550
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000025922	zf-CCHC	PF00098.23	0.00019	1	1
ENSLBEP00000025922	RRM_5	PF13893.6	9.2e-10	1	1
ENSLBEP00000025931	RRM_5	PF13893.6	3.2e-09	1	1
ENSLBEP00000025931	RRM_1	PF00076.22	2.8e-31	1	2
ENSLBEP00000025931	RRM_1	PF00076.22	2.8e-31	2	2
ENSLBEP00000025922	RRM_1	PF00076.22	1.2e-30	1	2
ENSLBEP00000025922	RRM_1	PF00076.22	1.2e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000027213	-	2610	XM_020649303	ENSLBEP00000025922	381 (aa)	XP_020504959	UPI0009B40C04
ENSLBET00000027221	-	1861	-	ENSLBEP00000025931	166 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000019756's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000019756's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000019756	-	86	52.000	ENSLBEG00000001025	rbm4.3	73	50.000
ENSLBEG00000019756	-	86	52.899	ENSLBEG00000001071	-	98	42.132
ENSLBEG00000019756	-	90	59.615	ENSLBEG00000019782	rbm4.1	99	46.809

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000019756	-	90	60.256	ENSAPOG00000012353	rbm4.1	95	49.377	Acanthochromis_polyacanthus
ENSLBEG00000019756	-	86	83.916	ENSAPOG00000012375	-	97	85.106	Acanthochromis_polyacanthus
ENSLBEG00000019756	-	89	81.757	ENSACIG00000016472	-	86	85.106	Amphilophus_citrinellus
ENSLBEG00000019756	-	90	60.897	ENSACIG00000016482	rbm4.1	99	48.235	Amphilophus_citrinellus
ENSLBEG00000019756	-	86	83.916	ENSAOCG00000010907	-	97	85.106	Amphiprion_ocellaris
ENSLBEG00000019756	-	90	60.256	ENSAOCG00000010915	rbm4.1	95	49.377	Amphiprion_ocellaris
ENSLBEG00000019756	-	86	86.232	ENSAPEG00000009476	-	88	85.106	Amphiprion_percula
ENSLBEG00000019756	-	90	60.256	ENSAPEG00000009494	rbm4.1	95	49.377	Amphiprion_percula
ENSLBEG00000019756	-	88	81.507	ENSATEG00000001912	-	94	82.517	Anabas_testudineus
ENSLBEG00000019756	-	90	60.256	ENSATEG00000001904	rbm4.1	98	50.239	Anabas_testudineus
ENSLBEG00000019756	-	90	60.897	ENSACLG00000007722	rbm4.1	99	48.700	Astatotilapia_calliptera
ENSLBEG00000019756	-	100	73.316	ENSACLG00000007740	-	100	72.135	Astatotilapia_calliptera
ENSLBEG00000019756	-	86	55.797	ENSAMXG00000032121	rbm4.2	89	54.930	Astyanax_mexicanus
ENSLBEG00000019756	-	90	62.179	ENSAMXG00000036611	rbm4.1	99	51.938	Astyanax_mexicanus
ENSLBEG00000019756	-	83	52.174	ENSCPBG00000023666	-	93	51.429	Chrysemys_picta_bellii
ENSLBEG00000019756	-	90	57.692	ENSCSEG00000014365	rbm4.1	100	46.618	Cynoglossus_semilaevis
ENSLBEG00000019756	-	86	63.043	ENSCSEG00000007739	-	99	63.043	Cynoglossus_semilaevis
ENSLBEG00000019756	-	100	73.522	ENSCSEG00000014359	-	100	73.522	Cynoglossus_semilaevis
ENSLBEG00000019756	-	90	60.256	ENSCVAG00000019349	rbm4.1	95	49.751	Cyprinodon_variegatus
ENSLBEG00000019756	-	99	56.477	ENSDARG00000055080	rbm4.2	99	56.812	Danio_rerio
ENSLBEG00000019756	-	86	68.841	ENSDARG00000036386	rbm4.1	79	68.841	Danio_rerio
ENSLBEG00000019756	-	91	53.086	ENSEBUG00000007174	-	97	55.172	Eptatretus_burgeri
ENSLBEG00000019756	-	85	58.156	ENSEBUG00000008142	-	76	45.361	Eptatretus_burgeri
ENSLBEG00000019756	-	90	67.308	ENSELUG00000013205	rbm4.1	98	49.642	Esox_lucius
ENSLBEG00000019756	-	86	82.609	ENSFHEG00000003483	-	92	82.143	Fundulus_heteroclitus
ENSLBEG00000019756	-	90	60.256	ENSFHEG00000022926	rbm4.1	95	48.371	Fundulus_heteroclitus
ENSLBEG00000019756	-	90	60.897	ENSGMOG00000007464	rbm4.1	99	46.283	Gadus_morhua
ENSLBEG00000019756	-	100	69.845	ENSGMOG00000007455	-	100	71.026	Gadus_morhua
ENSLBEG00000019756	-	93	78.261	ENSGAFG00000019301	-	91	78.261	Gambusia_affinis
ENSLBEG00000019756	-	90	62.179	ENSGAFG00000019302	rbm4.1	94	49.127	Gambusia_affinis
ENSLBEG00000019756	-	100	74.674	ENSGACG00000000821	-	100	74.413	Gasterosteus_aculeatus
ENSLBEG00000019756	-	90	59.615	ENSGACG00000000822	rbm4.1	96	50.407	Gasterosteus_aculeatus
ENSLBEG00000019756	-	83	52.174	ENSGAGG00000014558	-	93	51.429	Gopherus_agassizii
ENSLBEG00000019756	-	90	60.897	ENSHBUG00000011610	rbm4.1	99	48.700	Haplochromis_burtoni
ENSLBEG00000019756	-	86	88.406	ENSHBUG00000011624	-	91	88.406	Haplochromis_burtoni
ENSLBEG00000019756	-	90	57.962	ENSHCOG00000011403	rbm4.1	95	46.719	Hippocampus_comes
ENSLBEG00000019756	-	86	80.435	ENSHCOG00000011413	-	81	80.435	Hippocampus_comes
ENSLBEG00000019756	-	90	63.462	ENSIPUG00000022931	rbm4.1	99	48.000	Ictalurus_punctatus
ENSLBEG00000019756	-	93	56.438	ENSIPUG00000022937	rbm4.2	99	52.713	Ictalurus_punctatus
ENSLBEG00000019756	-	90	60.510	ENSKMAG00000006556	rbm4.1	95	48.866	Kryptolebias_marmoratus
ENSLBEG00000019756	-	100	59.705	ENSKMAG00000006528	-	100	60.494	Kryptolebias_marmoratus
ENSLBEG00000019756	-	83	54.348	ENSLACG00000006343	zgc:77262	52	53.378	Latimeria_chalumnae
ENSLBEG00000019756	-	86	62.319	ENSLOCG00000002772	rbm4.1	99	62.319	Lepisosteus_oculatus
ENSLBEG00000019756	-	90	60.897	ENSMAMG00000001765	rbm4.1	99	49.649	Mastacembelus_armatus
ENSLBEG00000019756	-	100	78.497	ENSMAMG00000001760	-	100	75.907	Mastacembelus_armatus
ENSLBEG00000019756	-	86	51.049	ENSMZEG00005028161	-	78	52.482	Maylandia_zebra
ENSLBEG00000019756	-	86	85.315	ENSMZEG00005028160	-	96	86.525	Maylandia_zebra
ENSLBEG00000019756	-	90	60.897	ENSMZEG00005009205	rbm4.1	99	48.700	Maylandia_zebra
ENSLBEG00000019756	-	83	81.884	ENSMZEG00005009210	-	78	81.884	Maylandia_zebra
ENSLBEG00000019756	-	63	57.724	ENSMZEG00005028158	-	80	56.148	Maylandia_zebra
ENSLBEG00000019756	-	86	85.507	ENSMMOG00000020484	-	86	85.507	Mola_mola
ENSLBEG00000019756	-	90	61.538	ENSMMOG00000020479	rbm4.1	99	48.364	Mola_mola
ENSLBEG00000019756	-	90	61.538	ENSMALG00000020544	rbm4.1	99	50.118	Monopterus_albus
ENSLBEG00000019756	-	100	82.078	ENSMALG00000020557	-	100	81.558	Monopterus_albus
ENSLBEG00000019756	-	86	87.681	ENSNBRG00000017763	-	90	87.681	Neolamprologus_brichardi
ENSLBEG00000019756	-	90	60.897	ENSNBRG00000017755	rbm4.1	99	48.700	Neolamprologus_brichardi
ENSLBEG00000019756	-	90	60.897	ENSONIG00000015730	rbm4.1	99	48.700	Oreochromis_niloticus
ENSLBEG00000019756	-	90	60.897	ENSORLG00000012496	rbm4.1	100	47.743	Oryzias_latipes
ENSLBEG00000019756	-	90	60.897	ENSORLG00020012454	rbm4.1	100	47.743	Oryzias_latipes_hni
ENSLBEG00000019756	-	90	60.897	ENSORLG00015013678	rbm4.1	99	47.255	Oryzias_latipes_hsok
ENSLBEG00000019756	-	90	61.538	ENSOMEG00000001001	rbm4.1	99	46.778	Oryzias_melastigma
ENSLBEG00000019756	-	86	68.085	ENSPKIG00000020805	rbm4.1	87	68.085	Paramormyrops_kingsleyae
ENSLBEG00000019756	-	86	65.942	ENSPMGG00000004331	rbm4.1	93	65.714	Periophthalmus_magnuspinnatus
ENSLBEG00000019756	-	83	54.015	ENSPMAG00000003433	rbm4.2	82	55.172	Petromyzon_marinus
ENSLBEG00000019756	-	90	62.179	ENSPFOG00000012675	rbm4.1	94	50.000	Poecilia_formosa
ENSLBEG00000019756	-	100	67.436	ENSPFOG00000012685	-	100	65.897	Poecilia_formosa
ENSLBEG00000019756	-	86	78.986	ENSPLAG00000018569	-	88	78.986	Poecilia_latipinna
ENSLBEG00000019756	-	90	62.179	ENSPLAG00000018572	rbm4.1	94	50.000	Poecilia_latipinna
ENSLBEG00000019756	-	90	62.179	ENSPMEG00000006290	rbm4.1	94	50.000	Poecilia_mexicana
ENSLBEG00000019756	-	86	78.986	ENSPMEG00000006278	-	88	78.986	Poecilia_mexicana
ENSLBEG00000019756	-	100	63.566	ENSPREG00000003764	-	100	62.016	Poecilia_reticulata
ENSLBEG00000019756	-	90	62.179	ENSPREG00000003724	rbm4.1	94	50.000	Poecilia_reticulata
ENSLBEG00000019756	-	86	88.406	ENSPNYG00000004649	-	90	88.406	Pundamilia_nyererei
ENSLBEG00000019756	-	90	60.897	ENSPNYG00000004662	rbm4.1	99	48.700	Pundamilia_nyererei
ENSLBEG00000019756	-	90	61.538	ENSPNAG00000002539	rbm4.1	99	49.029	Pygocentrus_nattereri
ENSLBEG00000019756	-	99	55.051	ENSPNAG00000013057	rbm4.2	99	53.316	Pygocentrus_nattereri
ENSLBEG00000019756	-	90	62.821	ENSSFOG00015021996	sf1	98	50.240	Scleropages_formosus
ENSLBEG00000019756	-	83	52.985	ENSSFOG00015018567	zgc:77262	89	52.985	Scleropages_formosus
ENSLBEG00000019756	-	88	82.192	ENSSMAG00000007575	-	99	79.870	Scophthalmus_maximus
ENSLBEG00000019756	-	90	60.897	ENSSMAG00000007571	rbm4.1	98	47.952	Scophthalmus_maximus
ENSLBEG00000019756	-	90	60.256	ENSSDUG00000003925	rbm4.1	99	49.180	Seriola_dumerili
ENSLBEG00000019756	-	100	84.197	ENSSDUG00000003936	-	100	83.161	Seriola_dumerili
ENSLBEG00000019756	-	90	60.256	ENSSLDG00000013147	rbm4.1	99	49.180	Seriola_lalandi_dorsalis
ENSLBEG00000019756	-	100	79.016	ENSSLDG00000013157	-	100	81.606	Seriola_lalandi_dorsalis
ENSLBEG00000019756	-	90	60.256	ENSSPAG00000019053	rbm4.1	99	48.585	Stegastes_partitus
ENSLBEG00000019756	-	100	76.166	ENSSPAG00000019046	-	100	75.065	Stegastes_partitus
ENSLBEG00000019756	-	100	71.990	ENSTRUG00000013328	-	100	71.990	Takifugu_rubripes
ENSLBEG00000019756	-	90	59.615	ENSTRUG00000013334	rbm4.1	99	46.429	Takifugu_rubripes
ENSLBEG00000019756	-	100	71.466	ENSTNIG00000000316	-	100	71.466	Tetraodon_nigroviridis
ENSLBEG00000019756	-	90	60.256	ENSTNIG00000004821	rbm4.1	95	48.509	Tetraodon_nigroviridis
ENSLBEG00000019756	-	86	60.145	ENSXETG00000026649	rbm4b	93	44.167	Xenopus_tropicalis
ENSLBEG00000019756	-	93	78.261	ENSXCOG00000003730	-	87	77.857	Xiphophorus_couchianus
ENSLBEG00000019756	-	90	62.179	ENSXCOG00000003731	rbm4.1	94	50.000	Xiphophorus_couchianus
ENSLBEG00000019756	-	90	62.179	ENSXMAG00000008069	rbm4.1	94	50.000	Xiphophorus_maculatus
ENSLBEG00000019756	-	93	76.389	ENSXMAG00000008059	-	100	65.553	Xiphophorus_maculatus