EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000019836 (Gene tree)
Gene ID: 109995522
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 10572 bases
Position: chrFKLU01000327.1:356675-367246
Accession: 109995522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000026241	KH_1	PF00013.29	3.8e-06	1	1
ENSLBEP00000026198	zf-CCHC	PF00098.23	0.00051	1	1
ENSLBEP00000026241	zf-CCHC	PF00098.23	0.00055	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000027492	-	1932	XM_020649263	ENSLBEP00000026198	643 (aa)	XP_020504919	-
ENSLBET00000027535	-	1905	-	ENSLBEP00000026241	634 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000019836's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000019836's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000019836	sf1	75	89.605	ENSAPOG00000012341	sf1	97	78.765	Acanthochromis_polyacanthus
ENSLBEG00000019836	sf1	50	86.890	ENSAMEG00000017828	SF1	58	81.937	Ailuropoda_melanoleuca
ENSLBEG00000019836	sf1	72	85.746	ENSACIG00000016514	sf1	85	85.621	Amphilophus_citrinellus
ENSLBEG00000019836	sf1	75	89.605	ENSAOCG00000010934	sf1	97	79.279	Amphiprion_ocellaris
ENSLBEG00000019836	sf1	75	89.605	ENSAPEG00000009498	sf1	97	79.279	Amphiprion_percula
ENSLBEG00000019836	sf1	72	90.196	ENSATEG00000001894	sf1	97	79.186	Anabas_testudineus
ENSLBEG00000019836	sf1	64	78.282	ENSANAG00000026664	-	89	82.199	Aotus_nancymaae
ENSLBEG00000019836	sf1	63	70.048	ENSANAG00000022607	-	89	72.944	Aotus_nancymaae
ENSLBEG00000019836	sf1	72	87.174	ENSACLG00000007633	sf1	97	68.598	Astatotilapia_calliptera
ENSLBEG00000019836	sf1	74	83.544	ENSAMXG00000003630	sf1	76	83.514	Astyanax_mexicanus
ENSLBEG00000019836	sf1	64	77.990	ENSBTAG00000001035	SF1	75	82.461	Bos_taurus
ENSLBEG00000019836	sf1	52	86.053	ENSCJAG00000002780	SF1	95	67.413	Callithrix_jacchus
ENSLBEG00000019836	sf1	52	86.053	ENSCAFG00000014239	SF1	58	82.461	Canis_familiaris
ENSLBEG00000019836	sf1	52	86.053	ENSCAFG00020014381	SF1	75	82.461	Canis_lupus_dingo
ENSLBEG00000019836	sf1	52	86.053	ENSCHIG00000025867	SF1	75	82.461	Capra_hircus
ENSLBEG00000019836	sf1	63	78.208	ENSCAPG00000010762	SF1	66	82.759	Cavia_aperea
ENSLBEG00000019836	sf1	64	78.230	ENSCPOG00000012290	SF1	94	60.175	Cavia_porcellus
ENSLBEG00000019836	sf1	79	78.398	ENSCCAG00000037881	SF1	89	82.199	Cebus_capucinus
ENSLBEG00000019836	sf1	64	71.154	ENSCCAG00000023781	-	83	73.037	Cebus_capucinus
ENSLBEG00000019836	sf1	64	78.230	ENSCATG00000011564	SF1	89	82.199	Cercocebus_atys
ENSLBEG00000019836	sf1	52	86.053	ENSCSAG00000007258	SF1	93	60.000	Chlorocebus_sabaeus
ENSLBEG00000019836	sf1	61	72.864	ENSCHOG00000006008	SF1	77	69.639	Choloepus_hoffmanni
ENSLBEG00000019836	sf1	52	85.841	ENSCPBG00000023763	SF1	57	75.223	Chrysemys_picta_bellii
ENSLBEG00000019836	sf1	64	56.971	ENSCING00000005564	-	83	57.518	Ciona_intestinalis
ENSLBEG00000019836	sf1	54	57.507	ENSCSAVG00000009055	-	72	61.889	Ciona_savignyi
ENSLBEG00000019836	sf1	59	81.152	ENSCANG00000042201	SF1	89	82.199	Colobus_angolensis_palliatus
ENSLBEG00000019836	sf1	64	78.469	ENSCGRG00001003677	Sf1	75	82.984	Cricetulus_griseus_chok1gshd
ENSLBEG00000019836	sf1	63	78.450	ENSCGRG00000001708	Sf1	69	82.507	Cricetulus_griseus_crigri
ENSLBEG00000019836	sf1	76	88.115	ENSCSEG00000014375	sf1	80	89.849	Cynoglossus_semilaevis
ENSLBEG00000019836	sf1	72	87.609	ENSCVAG00000001670	sf1	80	91.489	Cyprinodon_variegatus
ENSLBEG00000019836	sf1	84	84.699	ENSDARG00000008188	sf1	83	85.097	Danio_rerio
ENSLBEG00000019836	sf1	50	86.890	ENSDNOG00000001282	SF1	93	59.826	Dasypus_novemcinctus
ENSLBEG00000019836	sf1	64	78.230	ENSDORG00000016334	Sf1	75	82.461	Dipodomys_ordii
ENSLBEG00000019836	sf1	63	71.913	ENSETEG00000012830	SF1	51	75.067	Echinops_telfairi
ENSLBEG00000019836	sf1	93	51.040	ENSEBUG00000012728	sf1	58	60.233	Eptatretus_burgeri
ENSLBEG00000019836	sf1	52	86.053	ENSEASG00005018272	SF1	68	82.461	Equus_asinus_asinus
ENSLBEG00000019836	sf1	52	86.053	ENSECAG00000024544	SF1	68	82.461	Equus_caballus
ENSLBEG00000019836	sf1	57	78.342	ENSEEUG00000001058	SF1	83	82.789	Erinaceus_europaeus
ENSLBEG00000019836	sf1	78	85.990	ENSELUG00000013225	sf1	63	82.143	Esox_lucius
ENSLBEG00000019836	sf1	52	86.053	ENSFCAG00000012231	SF1	95	54.011	Felis_catus
ENSLBEG00000019836	sf1	63	78.208	ENSFDAG00000009833	SF1	66	82.493	Fukomys_damarensis
ENSLBEG00000019836	sf1	84	73.420	ENSGMOG00000007469	sf1	59	94.479	Gadus_morhua
ENSLBEG00000019836	sf1	75	88.125	ENSGAFG00000019284	sf1	74	88.817	Gambusia_affinis
ENSLBEG00000019836	sf1	60	91.842	ENSGACG00000000826	sf1	64	92.021	Gasterosteus_aculeatus
ENSLBEG00000019836	sf1	52	85.546	ENSGAGG00000021691	SF1	66	69.167	Gopherus_agassizii
ENSLBEG00000019836	sf1	72	88.720	ENSHBUG00000011598	sf1	83	87.905	Haplochromis_burtoni
ENSLBEG00000019836	sf1	64	78.230	ENSHGLG00000009541	SF1	65	82.461	Heterocephalus_glaber_female
ENSLBEG00000019836	sf1	60	71.499	ENSHGLG00100008255	-	71	77.966	Heterocephalus_glaber_male
ENSLBEG00000019836	sf1	63	78.208	ENSHGLG00100013879	-	96	61.863	Heterocephalus_glaber_male
ENSLBEG00000019836	sf1	74	85.474	ENSHCOG00000011388	sf1	86	86.580	Hippocampus_comes
ENSLBEG00000019836	sf1	59	71.504	ENSSTOG00000024353	-	67	72.513	Ictidomys_tridecemlineatus
ENSLBEG00000019836	sf1	50	86.890	ENSSTOG00000009790	-	76	82.415	Ictidomys_tridecemlineatus
ENSLBEG00000019836	sf1	52	86.053	ENSJJAG00000011788	Sf1	75	82.723	Jaculus_jaculus
ENSLBEG00000019836	sf1	64	86.878	ENSKMAG00000005854	sf1	70	88.197	Kryptolebias_marmoratus
ENSLBEG00000019836	sf1	65	76.978	ENSLACG00000018493	SF1	68	78.421	Latimeria_chalumnae
ENSLBEG00000019836	sf1	72	79.202	ENSLOCG00000002130	sf1	97	61.730	Lepisosteus_oculatus
ENSLBEG00000019836	sf1	84	72.125	ENSLAFG00000007201	SF1	61	82.787	Loxodonta_africana
ENSLBEG00000019836	sf1	64	78.230	ENSMFAG00000033122	SF1	89	82.199	Macaca_fascicularis
ENSLBEG00000019836	sf1	64	78.230	ENSMMUG00000022606	SF1	91	82.199	Macaca_mulatta
ENSLBEG00000019836	sf1	64	78.230	ENSMNEG00000037901	SF1	89	82.199	Macaca_nemestrina
ENSLBEG00000019836	sf1	64	78.043	ENSMLEG00000040706	SF1	90	81.984	Mandrillus_leucophaeus
ENSLBEG00000019836	sf1	72	90.476	ENSMAMG00000001780	sf1	97	80.030	Mastacembelus_armatus
ENSLBEG00000019836	sf1	72	88.720	ENSMZEG00005009196	sf1	83	87.905	Maylandia_zebra
ENSLBEG00000019836	sf1	64	78.469	ENSMAUG00000014064	Sf1	65	83.246	Mesocricetus_auratus
ENSLBEG00000019836	sf1	64	77.751	ENSMICG00000001202	SF1	89	81.984	Microcebus_murinus
ENSLBEG00000019836	sf1	64	78.469	ENSMOCG00000022038	Sf1	65	83.246	Microtus_ochrogaster
ENSLBEG00000019836	sf1	72	87.118	ENSMMOG00000020474	sf1	65	89.953	Mola_mola
ENSLBEG00000019836	sf1	64	78.043	ENSMODG00000029407	SF1	81	82.199	Monodelphis_domestica
ENSLBEG00000019836	sf1	64	93.431	ENSMALG00000020521	sf1	70	93.431	Monopterus_albus
ENSLBEG00000019836	sf1	64	78.469	MGP_CAROLIEiJ_G0022607	Sf1	99	94.737	Mus_caroli
ENSLBEG00000019836	sf1	64	78.469	ENSMUSG00000024949	Sf1	99	94.737	Mus_musculus
ENSLBEG00000019836	sf1	64	78.469	MGP_PahariEiJ_G0014101	Sf1	99	94.737	Mus_pahari
ENSLBEG00000019836	sf1	64	78.469	MGP_SPRETEiJ_G0023518	Sf1	99	94.737	Mus_spretus
ENSLBEG00000019836	sf1	50	86.890	ENSMPUG00000012684	SF1	75	82.461	Mustela_putorius_furo
ENSLBEG00000019836	sf1	67	74.424	ENSMLUG00000029800	-	64	78.534	Myotis_lucifugus
ENSLBEG00000019836	sf1	51	86.310	ENSMLUG00000015217	-	75	82.199	Myotis_lucifugus
ENSLBEG00000019836	sf1	64	78.469	ENSNGAG00000005550	Sf1	65	82.723	Nannospalax_galili
ENSLBEG00000019836	sf1	72	87.174	ENSNBRG00000017606	sf1	80	86.364	Neolamprologus_brichardi
ENSLBEG00000019836	sf1	64	77.327	ENSNLEG00000005236	-	89	82.199	Nomascus_leucogenys
ENSLBEG00000019836	sf1	50	87.077	ENSMEUG00000013424	SF1	69	82.888	Notamacropus_eugenii
ENSLBEG00000019836	sf1	64	75.837	ENSODEG00000006102	-	59	79.843	Octodon_degus
ENSLBEG00000019836	sf1	72	88.503	ENSONIG00000015728	sf1	83	87.689	Oreochromis_niloticus
ENSLBEG00000019836	sf1	53	75.072	ENSOANG00000002909	SF1	76	74.922	Ornithorhynchus_anatinus
ENSLBEG00000019836	sf1	50	86.890	ENSOCUG00000026486	SF1	59	82.461	Oryctolagus_cuniculus
ENSLBEG00000019836	sf1	74	86.947	ENSORLG00000011853	sf1	67	87.879	Oryzias_latipes
ENSLBEG00000019836	sf1	74	87.076	ENSORLG00020011834	sf1	67	88.017	Oryzias_latipes_hni
ENSLBEG00000019836	sf1	73	86.825	ENSORLG00015012855	sf1	66	87.013	Oryzias_latipes_hsok
ENSLBEG00000019836	sf1	74	88.983	ENSOMEG00000005210	sf1	97	77.542	Oryzias_melastigma
ENSLBEG00000019836	sf1	52	86.053	ENSOGAG00000016196	SF1	58	82.461	Otolemur_garnettii
ENSLBEG00000019836	sf1	52	86.053	ENSOARG00000009166	SF1	65	82.461	Ovis_aries
ENSLBEG00000019836	sf1	64	78.177	ENSPPAG00000002799	-	91	82.199	Pan_paniscus
ENSLBEG00000019836	sf1	50	86.890	ENSPPRG00000013566	SF1	75	82.967	Panthera_pardus
ENSLBEG00000019836	sf1	64	78.230	ENSPTIG00000016141	SF1	67	82.199	Panthera_tigris_altaica
ENSLBEG00000019836	sf1	66	78.037	ENSPTRG00000003846	SF1	89	82.199	Pan_troglodytes
ENSLBEG00000019836	sf1	64	78.230	ENSPANG00000020754	SF1	89	82.199	Papio_anubis
ENSLBEG00000019836	sf1	52	81.306	ENSPKIG00000012116	sf1	80	81.250	Paramormyrops_kingsleyae
ENSLBEG00000019836	sf1	64	78.469	ENSPEMG00000010463	Sf1	65	83.246	Peromyscus_maniculatus_bairdii
ENSLBEG00000019836	sf1	50	70.427	ENSPMAG00000008272	sf1	56	62.438	Petromyzon_marinus
ENSLBEG00000019836	sf1	64	77.990	ENSPCIG00000018173	SF1	78	82.461	Phascolarctos_cinereus
ENSLBEG00000019836	sf1	75	92.493	ENSPFOG00000013683	sf1	83	88.602	Poecilia_formosa
ENSLBEG00000019836	sf1	68	87.327	ENSPLAG00000018076	sf1	78	89.104	Poecilia_latipinna
ENSLBEG00000019836	sf1	72	88.913	ENSPMEG00000005726	sf1	83	88.602	Poecilia_mexicana
ENSLBEG00000019836	sf1	72	88.696	ENSPREG00000004155	sf1	83	88.387	Poecilia_reticulata
ENSLBEG00000019836	sf1	52	86.053	ENSPPYG00000003098	-	97	60.000	Pongo_abelii
ENSLBEG00000019836	sf1	50	86.585	ENSPCAG00000013631	SF1	75	68.350	Procavia_capensis
ENSLBEG00000019836	sf1	64	78.043	ENSPCOG00000027546	SF1	89	81.984	Propithecus_coquereli
ENSLBEG00000019836	sf1	50	86.890	ENSPVAG00000016938	SF1	95	54.624	Pteropus_vampyrus
ENSLBEG00000019836	sf1	72	88.937	ENSPNYG00000004673	sf1	83	88.147	Pundamilia_nyererei
ENSLBEG00000019836	sf1	72	83.731	ENSPNAG00000013072	sf1	86	83.731	Pygocentrus_nattereri
ENSLBEG00000019836	sf1	52	86.053	ENSRNOG00000021085	Sf1	75	82.984	Rattus_norvegicus
ENSLBEG00000019836	sf1	64	78.230	ENSRBIG00000042818	SF1	89	82.199	Rhinopithecus_bieti
ENSLBEG00000019836	sf1	64	78.095	ENSRROG00000045655	SF1	90	81.984	Rhinopithecus_roxellana
ENSLBEG00000019836	sf1	60	67.857	ENSSBOG00000022267	-	85	72.365	Saimiri_boliviensis_boliviensis
ENSLBEG00000019836	sf1	70	75.385	ENSSHAG00000006841	SF1	69	83.421	Sarcophilus_harrisii
ENSLBEG00000019836	sf1	76	79.261	ENSSFOG00015021978	sf1	82	79.828	Scleropages_formosus
ENSLBEG00000019836	sf1	84	82.735	ENSSMAG00000007549	sf1	71	90.323	Scophthalmus_maximus
ENSLBEG00000019836	sf1	62	88.657	ENSSDUG00000003903	sf1	70	90.343	Seriola_dumerili
ENSLBEG00000019836	sf1	72	90.713	ENSSLDG00000013075	sf1	68	90.558	Seriola_lalandi_dorsalis
ENSLBEG00000019836	sf1	63	73.608	ENSSARG00000008180	SF1	72	77.690	Sorex_araneus
ENSLBEG00000019836	sf1	63	77.726	ENSSPUG00000012907	SF1	59	84.807	Sphenodon_punctatus
ENSLBEG00000019836	sf1	75	90.021	ENSSPAG00000019060	sf1	97	78.829	Stegastes_partitus
ENSLBEG00000019836	sf1	52	86.053	ENSSSCG00000013021	SF1	75	82.199	Sus_scrofa
ENSLBEG00000019836	sf1	61	76.485	ENSTNIG00000004820	sf1	72	76.726	Tetraodon_nigroviridis
ENSLBEG00000019836	sf1	63	72.482	ENSTBEG00000013133	SF1	50	80.057	Tupaia_belangeri
ENSLBEG00000019836	sf1	50	80.734	ENSTTRG00000008857	SF1	94	56.591	Tursiops_truncatus
ENSLBEG00000019836	sf1	64	79.369	ENSUMAG00000007268	SF1	71	82.461	Ursus_maritimus
ENSLBEG00000019836	sf1	52	86.053	ENSVVUG00000028585	SF1	93	60.000	Vulpes_vulpes
ENSLBEG00000019836	sf1	88	76.471	ENSXETG00000008434	sf1	61	83.616	Xenopus_tropicalis
ENSLBEG00000019836	sf1	53	93.162	ENSXCOG00000003704	sf1	69	93.514	Xiphophorus_couchianus
ENSLBEG00000019836	sf1	72	89.371	ENSXMAG00000007822	sf1	83	89.247	Xiphophorus_maculatus