EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000020480 (Gene tree)
Gene ID: 109981000
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 11437 bases
Position: chrFKLU01000002.1:4835682-4847118
Accession: 109981000
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000026947	RRM_1	PF00076.22	5e-29	1	2
ENSLBEP00000026947	RRM_1	PF00076.22	5e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000028246	-	4742	XM_020629609	ENSLBEP00000026947	334 (aa)	XP_020485265	UPI0009B2E87D

Gene Model

Click here to download ENSLBEG00000020480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000020480's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000020480	trnau1apb	51	31.609	ENSLBEG00000000122	-	68	31.034
ENSLBEG00000020480	trnau1apb	95	43.210	ENSLBEG00000011683	trnau1apa	93	42.593

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000020480	trnau1apb	100	77.515	ENSAPOG00000010086	trnau1apb	100	72.537	Acanthochromis_polyacanthus
ENSLBEG00000020480	trnau1apb	100	81.579	ENSACIG00000001863	trnau1apb	100	80.994	Amphilophus_citrinellus
ENSLBEG00000020480	trnau1apb	100	89.118	ENSAOCG00000011891	trnau1apb	100	89.118	Amphiprion_ocellaris
ENSLBEG00000020480	trnau1apb	100	88.393	ENSAPEG00000008029	trnau1apb	100	90.774	Amphiprion_percula
ENSLBEG00000020480	trnau1apb	100	89.706	ENSATEG00000002196	trnau1apb	100	90.000	Anabas_testudineus
ENSLBEG00000020480	trnau1apb	100	83.186	ENSACLG00000003016	trnau1apb	100	81.471	Astatotilapia_calliptera
ENSLBEG00000020480	trnau1apb	99	66.766	ENSAMXG00000001805	trnau1apb	99	66.967	Astyanax_mexicanus
ENSLBEG00000020480	trnau1apb	99	84.024	ENSCSEG00000018215	trnau1apb	99	84.320	Cynoglossus_semilaevis
ENSLBEG00000020480	trnau1apb	95	77.204	ENSCVAG00000017866	trnau1apb	100	77.508	Cyprinodon_variegatus
ENSLBEG00000020480	trnau1apb	100	63.095	ENSDARG00000056475	trnau1apb	98	65.361	Danio_rerio
ENSLBEG00000020480	trnau1apb	100	63.205	ENSELUG00000016683	trnau1apb	99	64.392	Esox_lucius
ENSLBEG00000020480	trnau1apb	100	79.420	ENSFHEG00000001267	trnau1apb	100	79.635	Fundulus_heteroclitus
ENSLBEG00000020480	trnau1apb	100	70.231	ENSGMOG00000001160	trnau1apb	100	69.828	Gadus_morhua
ENSLBEG00000020480	trnau1apb	53	94.350	ENSGAFG00000006770	trnau1apb	100	72.700	Gambusia_affinis
ENSLBEG00000020480	trnau1apb	100	83.582	ENSGACG00000014944	trnau1apb	100	83.582	Gasterosteus_aculeatus
ENSLBEG00000020480	trnau1apb	71	40.586	ENSGAGG00000022384	-	78	40.167	Gopherus_agassizii
ENSLBEG00000020480	trnau1apb	100	87.647	ENSHBUG00000018944	trnau1apb	99	86.765	Haplochromis_burtoni
ENSLBEG00000020480	trnau1apb	69	83.117	ENSHCOG00000011350	trnau1apb	77	80.913	Hippocampus_comes
ENSLBEG00000020480	trnau1apb	99	62.798	ENSIPUG00000008843	tsp1l	99	67.267	Ictalurus_punctatus
ENSLBEG00000020480	trnau1apb	66	89.041	ENSKMAG00000010082	trnau1apb	99	81.287	Kryptolebias_marmoratus
ENSLBEG00000020480	trnau1apb	100	52.522	ENSLOCG00000013175	trnau1apb	99	54.006	Lepisosteus_oculatus
ENSLBEG00000020480	trnau1apb	100	88.496	ENSMAMG00000012192	trnau1apb	100	89.086	Mastacembelus_armatus
ENSLBEG00000020480	trnau1apb	100	87.647	ENSMZEG00005014852	trnau1apb	99	86.765	Maylandia_zebra
ENSLBEG00000020480	trnau1apb	71	39.076	ENSMGAG00000003234	-	99	38.655	Meleagris_gallopavo
ENSLBEG00000020480	trnau1apb	97	76.093	ENSMMOG00000021521	trnau1apb	100	76.093	Mola_mola
ENSLBEG00000020480	trnau1apb	100	73.952	ENSMALG00000003772	trnau1apb	100	73.952	Monopterus_albus
ENSLBEG00000020480	trnau1apb	97	82.675	ENSNBRG00000000751	trnau1apb	99	80.909	Neolamprologus_brichardi
ENSLBEG00000020480	trnau1apb	99	79.758	ENSONIG00000016639	trnau1apb	100	78.012	Oreochromis_niloticus
ENSLBEG00000020480	trnau1apb	67	89.732	ENSORLG00000013265	trnau1apb	99	82.267	Oryzias_latipes
ENSLBEG00000020480	trnau1apb	100	83.041	ENSORLG00020004464	trnau1apb	100	82.209	Oryzias_latipes_hni
ENSLBEG00000020480	trnau1apb	100	83.333	ENSORLG00015021098	trnau1apb	99	83.333	Oryzias_latipes_hsok
ENSLBEG00000020480	trnau1apb	100	72.384	ENSOMEG00000016531	trnau1apb	99	83.140	Oryzias_melastigma
ENSLBEG00000020480	trnau1apb	100	59.226	ENSPKIG00000007995	trnau1apb	99	60.350	Paramormyrops_kingsleyae
ENSLBEG00000020480	trnau1apb	71	43.515	ENSPSIG00000004189	-	78	41.423	Pelodiscus_sinensis
ENSLBEG00000020480	trnau1apb	81	77.500	ENSPMGG00000018509	trnau1apb	97	78.333	Periophthalmus_magnuspinnatus
ENSLBEG00000020480	trnau1apb	100	78.551	ENSPFOG00000003938	trnau1apb	99	79.130	Poecilia_formosa
ENSLBEG00000020480	trnau1apb	100	78.551	ENSPLAG00000015480	trnau1apb	99	79.130	Poecilia_latipinna
ENSLBEG00000020480	trnau1apb	100	78.551	ENSPMEG00000012743	trnau1apb	99	79.130	Poecilia_mexicana
ENSLBEG00000020480	trnau1apb	100	77.391	ENSPREG00000015035	trnau1apb	99	77.971	Poecilia_reticulata
ENSLBEG00000020480	trnau1apb	100	80.531	ENSPNYG00000012127	trnau1apb	100	78.824	Pundamilia_nyererei
ENSLBEG00000020480	trnau1apb	99	64.881	ENSPNAG00000019138	trnau1apb	98	67.568	Pygocentrus_nattereri
ENSLBEG00000020480	trnau1apb	99	61.290	ENSSFOG00015014158	trnau1apb	99	63.798	Scleropages_formosus
ENSLBEG00000020480	trnau1apb	99	87.202	ENSSMAG00000001745	trnau1apb	99	86.310	Scophthalmus_maximus
ENSLBEG00000020480	trnau1apb	99	89.971	ENSSDUG00000011109	trnau1apb	99	89.971	Seriola_dumerili
ENSLBEG00000020480	trnau1apb	99	89.971	ENSSLDG00000012947	trnau1apb	99	89.971	Seriola_lalandi_dorsalis
ENSLBEG00000020480	trnau1apb	70	33.984	ENSSPUG00000016701	-	82	37.600	Sphenodon_punctatus
ENSLBEG00000020480	trnau1apb	100	89.706	ENSSPAG00000006917	trnau1apb	100	90.000	Stegastes_partitus
ENSLBEG00000020480	trnau1apb	100	81.232	ENSTRUG00000008608	trnau1apb	99	81.341	Takifugu_rubripes
ENSLBEG00000020480	trnau1apb	99	72.508	ENSTNIG00000000916	trnau1apb	100	71.299	Tetraodon_nigroviridis
ENSLBEG00000020480	trnau1apb	94	67.925	ENSXCOG00000007974	trnau1apb	94	66.770	Xiphophorus_couchianus
ENSLBEG00000020480	trnau1apb	100	78.551	ENSXMAG00000029918	trnau1apb	99	79.130	Xiphophorus_maculatus