EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000020955 (Gene tree)
Gene ID: 109997826
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 14814 bases
Position: chrFKLU01000442.1:310396-325209
Accession: 109997826
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000027684	zf-C2H2	PF00096.26	1.5e-17	1	3
ENSLBEP00000027684	zf-C2H2	PF00096.26	1.5e-17	2	3
ENSLBEP00000027684	zf-C2H2	PF00096.26	1.5e-17	3	3
ENSLBEP00000027676	zf-C2H2	PF00096.26	3.3e-17	1	3
ENSLBEP00000027676	zf-C2H2	PF00096.26	3.3e-17	2	3
ENSLBEP00000027676	zf-C2H2	PF00096.26	3.3e-17	3	3
ENSLBEP00000027659	zf-C2H2	PF00096.26	4.8e-17	1	3
ENSLBEP00000027659	zf-C2H2	PF00096.26	4.8e-17	2	3
ENSLBEP00000027659	zf-C2H2	PF00096.26	4.8e-17	3	3
ENSLBEP00000027684	zf-met	PF12874.7	2.5e-06	1	1
ENSLBEP00000027676	zf-met	PF12874.7	5.8e-06	1	1
ENSLBEP00000027659	zf-met	PF12874.7	8.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000028977	-	2349	-	ENSLBEP00000027659	782 (aa)	-	-
ENSLBET00000028995	-	5039	XM_020652440	ENSLBEP00000027676	722 (aa)	XP_020508096	UPI0009B45622
ENSLBET00000029003	-	4996	XM_020652439	ENSLBEP00000027684	628 (aa)	XP_020508095	UPI0009B3CC41

Gene Model

Click here to download ENSLBEG00000020955's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000020955's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000020955	prdm1b	51	33.588	ENSLBEG00000013197	PRDM15	67	34.677

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000020955	prdm1b	75	62.857	ENSAPOG00000014135	-	75	58.025	Acanthochromis_polyacanthus
ENSLBEG00000020955	prdm1b	73	71.895	ENSAPOG00000022084	prdm1b	95	73.203	Acanthochromis_polyacanthus
ENSLBEG00000020955	prdm1b	97	77.377	ENSACIG00000014426	prdm1b	98	77.377	Amphilophus_citrinellus
ENSLBEG00000020955	prdm1b	64	58.025	ENSACIG00000009747	-	64	51.515	Amphilophus_citrinellus
ENSLBEG00000020955	prdm1b	94	75.254	ENSAOCG00000002230	prdm1b	98	75.468	Amphiprion_ocellaris
ENSLBEG00000020955	prdm1b	100	76.870	ENSAPEG00000019826	prdm1b	100	76.870	Amphiprion_percula
ENSLBEG00000020955	prdm1b	100	84.897	ENSATEG00000006924	prdm1b	100	86.169	Anabas_testudineus
ENSLBEG00000020955	prdm1b	55	56.173	ENSATEG00000014034	-	53	56.173	Anabas_testudineus
ENSLBEG00000020955	prdm1b	71	66.197	ENSATEG00000021017	prdm1a	99	40.201	Anabas_testudineus
ENSLBEG00000020955	prdm1b	93	82.705	ENSACLG00000005487	prdm1b	90	82.705	Astatotilapia_calliptera
ENSLBEG00000020955	prdm1b	67	59.336	ENSCSEG00000009707	prdm1a	73	54.802	Cynoglossus_semilaevis
ENSLBEG00000020955	prdm1b	100	77.210	ENSCVAG00000016746	prdm1b	100	77.901	Cyprinodon_variegatus
ENSLBEG00000020955	prdm1b	73	58.282	ENSCVAG00000019081	prdm1a	80	55.429	Cyprinodon_variegatus
ENSLBEG00000020955	prdm1b	100	78.662	ENSFHEG00000019848	prdm1b	100	78.662	Fundulus_heteroclitus
ENSLBEG00000020955	prdm1b	99	75.824	ENSGAFG00000016191	prdm1b	96	79.242	Gambusia_affinis
ENSLBEG00000020955	prdm1b	52	65.714	ENSGAFG00000013012	-	56	54.938	Gambusia_affinis
ENSLBEG00000020955	prdm1b	93	75.421	ENSGACG00000002716	prdm1b	100	75.562	Gasterosteus_aculeatus
ENSLBEG00000020955	prdm1b	93	83.162	ENSHBUG00000001475	prdm1b	95	83.162	Haplochromis_burtoni
ENSLBEG00000020955	prdm1b	100	75.277	ENSHCOG00000003617	prdm1b	100	75.277	Hippocampus_comes
ENSLBEG00000020955	prdm1b	90	56.452	ENSIPUG00000013740	prdm1b	94	56.452	Ictalurus_punctatus
ENSLBEG00000020955	prdm1b	60	67.606	ENSKMAG00000017597	prdm1a	64	59.036	Kryptolebias_marmoratus
ENSLBEG00000020955	prdm1b	88	39.356	ENSKMAG00000016247	-	86	39.356	Kryptolebias_marmoratus
ENSLBEG00000020955	prdm1b	92	73.217	ENSKMAG00000011218	prdm1b	91	73.391	Kryptolebias_marmoratus
ENSLBEG00000020955	prdm1b	83	73.810	ENSLOCG00000004978	prdm1b	78	73.810	Lepisosteus_oculatus
ENSLBEG00000020955	prdm1b	100	81.081	ENSMZEG00005026361	prdm1b	95	81.081	Maylandia_zebra
ENSLBEG00000020955	prdm1b	93	84.786	ENSMMOG00000013458	prdm1b	96	84.786	Mola_mola
ENSLBEG00000020955	prdm1b	97	79.412	ENSMALG00000011410	prdm1b	99	79.575	Monopterus_albus
ENSLBEG00000020955	prdm1b	52	62.857	ENSMALG00000000462	-	54	56.790	Monopterus_albus
ENSLBEG00000020955	prdm1b	50	60.386	ENSONIG00000014709	-	52	58.025	Oreochromis_niloticus
ENSLBEG00000020955	prdm1b	92	69.631	ENSONIG00000013583	prdm1b	100	71.214	Oreochromis_niloticus
ENSLBEG00000020955	prdm1b	99	68.315	ENSORLG00000010025	prdm1b	99	68.789	Oryzias_latipes
ENSLBEG00000020955	prdm1b	90	70.826	ENSORLG00015009022	prdm1b	92	70.826	Oryzias_latipes_hsok
ENSLBEG00000020955	prdm1b	79	80.282	ENSPKIG00000022335	prdm1b	86	77.358	Paramormyrops_kingsleyae
ENSLBEG00000020955	prdm1b	88	72.504	ENSPFOG00000003103	prdm1b	100	72.504	Poecilia_formosa
ENSLBEG00000020955	prdm1b	99	79.650	ENSPLAG00000018491	prdm1b	99	79.683	Poecilia_latipinna
ENSLBEG00000020955	prdm1b	100	81.587	ENSPMEG00000007869	prdm1b	100	81.587	Poecilia_mexicana
ENSLBEG00000020955	prdm1b	99	79.811	ENSPREG00000011327	prdm1b	99	79.811	Poecilia_reticulata
ENSLBEG00000020955	prdm1b	67	59.884	ENSPVAG00000011732	PRDM1	94	40.287	Pteropus_vampyrus
ENSLBEG00000020955	prdm1b	91	44.012	ENSPNAG00000028442	prdm1a	92	41.492	Pygocentrus_nattereri
ENSLBEG00000020955	prdm1b	92	62.199	ENSSFOG00015021896	prdm1b	92	62.199	Scleropages_formosus
ENSLBEG00000020955	prdm1b	55	64.384	ENSSMAG00000017518	-	54	56.364	Scophthalmus_maximus
ENSLBEG00000020955	prdm1b	100	84.786	ENSSMAG00000020467	prdm1b	100	84.786	Scophthalmus_maximus
ENSLBEG00000020955	prdm1b	60	67.143	ENSSDUG00000000524	-	59	57.407	Seriola_dumerili
ENSLBEG00000020955	prdm1b	100	88.553	ENSSDUG00000020610	prdm1b	100	88.553	Seriola_dumerili
ENSLBEG00000020955	prdm1b	60	65.714	ENSSLDG00000001957	-	59	56.790	Seriola_lalandi_dorsalis
ENSLBEG00000020955	prdm1b	100	89.073	ENSSLDG00000021973	prdm1b	100	89.073	Seriola_lalandi_dorsalis
ENSLBEG00000020955	prdm1b	100	80.286	ENSSPAG00000000803	prdm1b	100	80.922	Stegastes_partitus
ENSLBEG00000020955	prdm1b	96	39.840	ENSSPAG00000009830	-	93	39.840	Stegastes_partitus
ENSLBEG00000020955	prdm1b	96	80.087	ENSXCOG00000018920	prdm1b	98	80.087	Xiphophorus_couchianus
ENSLBEG00000020955	prdm1b	100	75.204	ENSXMAG00000016765	prdm1b	97	75.372	Xiphophorus_maculatus