EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000021570 (Gene tree)
Gene ID: 109983997
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 8661 bases
Position: chrFKLU01000063.1:1115522-1124182
Accession: 109983997
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000028508	Smg4_UPF3	PF03467.15	7.1e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000029849	-	1341	XM_020633964	ENSLBEP00000028508	446 (aa)	XP_020489620	-

Gene Model

Click here to download ENSLBEG00000021570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000021570's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000021570	upf3a	89	52.315	ENSG00000169062	UPF3A	90	53.704	Homo_sapiens
ENSLBEG00000021570	upf3a	84	49.043	ENSAPOG00000012775	upf3b	89	45.209	Acanthochromis_polyacanthus
ENSLBEG00000021570	upf3a	100	87.965	ENSAPOG00000013484	upf3a	98	88.791	Acanthochromis_polyacanthus
ENSLBEG00000021570	upf3a	99	84.486	ENSACIG00000020468	upf3a	99	85.115	Amphilophus_citrinellus
ENSLBEG00000021570	upf3a	84	47.585	ENSAOCG00000000706	upf3b	88	44.335	Amphiprion_ocellaris
ENSLBEG00000021570	upf3a	100	89.497	ENSAOCG00000020784	upf3a	98	89.451	Amphiprion_ocellaris
ENSLBEG00000021570	upf3a	100	89.497	ENSAPEG00000003519	upf3a	98	89.451	Amphiprion_percula
ENSLBEG00000021570	upf3a	100	89.278	ENSATEG00000005843	upf3a	98	88.571	Anabas_testudineus
ENSLBEG00000021570	upf3a	84	48.434	ENSATEG00000018742	upf3b	89	46.135	Anabas_testudineus
ENSLBEG00000021570	upf3a	83	63.224	ENSACAG00000001540	UPF3A	94	64.484	Anolis_carolinensis
ENSLBEG00000021570	upf3a	87	46.083	ENSACAG00000003625	UPF3B	91	46.991	Anolis_carolinensis
ENSLBEG00000021570	upf3a	83	47.277	ENSANAG00000021894	-	77	70.303	Aotus_nancymaae
ENSLBEG00000021570	upf3a	84	46.667	ENSANAG00000025598	-	62	65.217	Aotus_nancymaae
ENSLBEG00000021570	upf3a	100	84.632	ENSACLG00000026274	upf3a	98	85.412	Astatotilapia_calliptera
ENSLBEG00000021570	upf3a	100	76.638	ENSAMXG00000002608	upf3a	100	77.293	Astyanax_mexicanus
ENSLBEG00000021570	upf3a	55	31.008	WBGene00004882	smg-4	51	32.386	Caenorhabditis_elegans
ENSLBEG00000021570	upf3a	83	47.174	ENSCJAG00000004975	UPF3B	77	69.697	Callithrix_jacchus
ENSLBEG00000021570	upf3a	91	50.113	ENSCJAG00000019102	UPF3A	92	51.351	Callithrix_jacchus
ENSLBEG00000021570	upf3a	83	46.985	ENSCAFG00020004074	UPF3B	64	71.233	Canis_lupus_dingo
ENSLBEG00000021570	upf3a	83	53.535	ENSCHIG00000008682	UPF3A	85	49.306	Capra_hircus
ENSLBEG00000021570	upf3a	83	45.343	ENSTSYG00000014690	UPF3B	76	65.294	Carlito_syrichta
ENSLBEG00000021570	upf3a	81	41.711	ENSCCAG00000029813	-	56	57.396	Cebus_capucinus
ENSLBEG00000021570	upf3a	91	51.016	ENSCCAG00000018406	UPF3A	92	52.477	Cebus_capucinus
ENSLBEG00000021570	upf3a	91	52.283	ENSCATG00000029733	UPF3A	94	52.596	Cercocebus_atys
ENSLBEG00000021570	upf3a	91	52.466	ENSCSAG00000017388	UPF3A	94	52.550	Chlorocebus_sabaeus
ENSLBEG00000021570	upf3a	84	51.128	ENSCGRG00001017387	Upf3a	94	52.381	Cricetulus_griseus_chok1gshd
ENSLBEG00000021570	upf3a	84	51.128	ENSCGRG00000001468	Upf3a	94	52.381	Cricetulus_griseus_crigri
ENSLBEG00000021570	upf3a	99	85.495	ENSCSEG00000005106	upf3a	98	86.154	Cynoglossus_semilaevis
ENSLBEG00000021570	upf3a	100	81.441	ENSCVAG00000022333	upf3a	98	82.018	Cyprinodon_variegatus
ENSLBEG00000021570	upf3a	99	75.385	ENSDARG00000069297	upf3a	99	75.877	Danio_rerio
ENSLBEG00000021570	upf3a	83	45.913	ENSDARG00000000489	upf3b	88	45.652	Danio_rerio
ENSLBEG00000021570	upf3a	82	54.637	ENSDNOG00000034391	UPF3A	90	55.890	Dasypus_novemcinctus
ENSLBEG00000021570	upf3a	93	46.336	ENSETEG00000010110	UPF3A	96	47.414	Echinops_telfairi
ENSLBEG00000021570	upf3a	83	48.744	ENSEASG00005012919	UPF3B	62	68.116	Equus_asinus_asinus
ENSLBEG00000021570	upf3a	83	48.744	ENSECAG00000016947	UPF3B	62	61.429	Equus_caballus
ENSLBEG00000021570	upf3a	100	78.065	ENSELUG00000011050	upf3a	100	78.710	Esox_lucius
ENSLBEG00000021570	upf3a	91	55.305	ENSFCAG00000014602	UPF3A	92	52.262	Felis_catus
ENSLBEG00000021570	upf3a	69	71.779	ENSGMOG00000019615	upf3a	50	93.865	Gadus_morhua
ENSLBEG00000021570	upf3a	100	81.878	ENSGAFG00000021170	upf3a	98	83.553	Gambusia_affinis
ENSLBEG00000021570	upf3a	69	75.000	ENSGACG00000001972	upf3a	100	75.938	Gasterosteus_aculeatus
ENSLBEG00000021570	upf3a	80	45.250	ENSGACG00000017435	upf3b	60	70.122	Gasterosteus_aculeatus
ENSLBEG00000021570	upf3a	85	44.787	ENSGAGG00000001219	UPF3B	88	46.359	Gopherus_agassizii
ENSLBEG00000021570	upf3a	81	50.133	ENSGGOG00000041219	-	85	50.133	Gorilla_gorilla
ENSLBEG00000021570	upf3a	81	49.868	ENSGGOG00000043074	-	81	49.457	Gorilla_gorilla
ENSLBEG00000021570	upf3a	89	53.222	ENSGGOG00000015428	UPF3A	90	53.472	Gorilla_gorilla
ENSLBEG00000021570	upf3a	100	88.840	ENSHBUG00000011325	upf3a	98	88.791	Haplochromis_burtoni
ENSLBEG00000021570	upf3a	81	51.145	ENSHGLG00000001544	UPF3A	50	66.029	Heterocephalus_glaber_female
ENSLBEG00000021570	upf3a	81	51.145	ENSHGLG00100013244	UPF3A	50	66.029	Heterocephalus_glaber_male
ENSLBEG00000021570	upf3a	98	75.670	ENSHCOG00000013985	upf3a	96	76.786	Hippocampus_comes
ENSLBEG00000021570	upf3a	100	75.163	ENSIPUG00000023450	upf3a	100	75.817	Ictalurus_punctatus
ENSLBEG00000021570	upf3a	100	85.371	ENSKMAG00000004381	upf3a	98	86.184	Kryptolebias_marmoratus
ENSLBEG00000021570	upf3a	60	44.242	ENSLACG00000006645	UPF3A	66	85.965	Latimeria_chalumnae
ENSLBEG00000021570	upf3a	99	70.386	ENSLOCG00000002665	upf3a	99	71.459	Lepisosteus_oculatus
ENSLBEG00000021570	upf3a	91	52.315	ENSMFAG00000045016	UPF3A	94	51.382	Macaca_fascicularis
ENSLBEG00000021570	upf3a	88	52.300	ENSMMUG00000007449	UPF3A	94	51.963	Macaca_mulatta
ENSLBEG00000021570	upf3a	83	54.145	ENSMNEG00000036402	UPF3A	82	54.430	Macaca_nemestrina
ENSLBEG00000021570	upf3a	83	53.846	ENSMLEG00000014726	UPF3A	93	54.177	Mandrillus_leucophaeus
ENSLBEG00000021570	upf3a	100	84.144	ENSMAMG00000018364	upf3a	98	85.350	Mastacembelus_armatus
ENSLBEG00000021570	upf3a	100	84.632	ENSMZEG00005021571	upf3a	98	85.412	Maylandia_zebra
ENSLBEG00000021570	upf3a	86	58.578	ENSMGAG00000014837	UPF3A	99	59.804	Meleagris_gallopavo
ENSLBEG00000021570	upf3a	53	61.446	ENSMOCG00000000550	Upf3a	50	74.576	Microtus_ochrogaster
ENSLBEG00000021570	upf3a	99	81.529	ENSMMOG00000019751	upf3a	98	82.166	Mola_mola
ENSLBEG00000021570	upf3a	84	60.837	ENSMODG00000003159	UPF3A	99	60.230	Monodelphis_domestica
ENSLBEG00000021570	upf3a	81	53.457	MGP_CAROLIEiJ_G0030848	Upf3a	87	52.561	Mus_caroli
ENSLBEG00000021570	upf3a	80	53.333	ENSMUSG00000038398	Upf3a	87	53.639	Mus_musculus
ENSLBEG00000021570	upf3a	80	54.667	MGP_PahariEiJ_G0021311	Upf3a	87	51.862	Mus_pahari
ENSLBEG00000021570	upf3a	80	53.333	MGP_SPRETEiJ_G0031958	Upf3a	87	53.369	Mus_spretus
ENSLBEG00000021570	upf3a	81	54.476	ENSMLUG00000015905	UPF3A	92	56.010	Myotis_lucifugus
ENSLBEG00000021570	upf3a	100	88.403	ENSNBRG00000000828	upf3a	98	88.352	Neolamprologus_brichardi
ENSLBEG00000021570	upf3a	89	54.048	ENSNLEG00000007563	UPF3A	90	54.273	Nomascus_leucogenys
ENSLBEG00000021570	upf3a	100	87.609	ENSONIG00000006817	upf3a	98	87.555	Oreochromis_niloticus
ENSLBEG00000021570	upf3a	77	50.543	ENSOANG00000006985	-	95	52.446	Ornithorhynchus_anatinus
ENSLBEG00000021570	upf3a	100	79.176	ENSORLG00000010911	upf3a	98	80.392	Oryzias_latipes
ENSLBEG00000021570	upf3a	100	79.869	ENSORLG00020014317	upf3a	98	79.780	Oryzias_latipes_hni
ENSLBEG00000021570	upf3a	83	42.195	ENSORLG00020003758	upf3b	56	61.988	Oryzias_latipes_hni
ENSLBEG00000021570	upf3a	100	79.212	ENSORLG00015017339	upf3a	57	79.431	Oryzias_latipes_hsok
ENSLBEG00000021570	upf3a	100	83.151	ENSOMEG00000014425	upf3a	98	83.077	Oryzias_melastigma
ENSLBEG00000021570	upf3a	77	51.979	ENSOGAG00000004788	UPF3A	50	69.756	Otolemur_garnettii
ENSLBEG00000021570	upf3a	84	53.750	ENSOARG00000009004	UPF3A	84	52.451	Ovis_aries
ENSLBEG00000021570	upf3a	89	52.083	ENSPPAG00000042267	UPF3A	91	53.472	Pan_paniscus
ENSLBEG00000021570	upf3a	91	55.079	ENSPPRG00000025062	UPF3A	92	52.036	Panthera_pardus
ENSLBEG00000021570	upf3a	89	52.083	ENSPTRG00000006073	UPF3A	90	53.472	Pan_troglodytes
ENSLBEG00000021570	upf3a	81	49.863	ENSPTRG00000041835	-	84	45.989	Pan_troglodytes
ENSLBEG00000021570	upf3a	81	49.347	ENSPTRG00000041187	-	86	48.936	Pan_troglodytes
ENSLBEG00000021570	upf3a	81	46.296	ENSPTRG00000051640	-	85	46.296	Pan_troglodytes
ENSLBEG00000021570	upf3a	89	53.505	ENSPANG00000004346	UPF3A	94	52.822	Papio_anubis
ENSLBEG00000021570	upf3a	100	65.306	ENSPKIG00000004422	upf3a	100	66.327	Paramormyrops_kingsleyae
ENSLBEG00000021570	upf3a	90	46.563	ENSPKIG00000019226	upf3b	86	67.376	Paramormyrops_kingsleyae
ENSLBEG00000021570	upf3a	83	62.121	ENSPSIG00000007468	UPF3A	96	63.384	Pelodiscus_sinensis
ENSLBEG00000021570	upf3a	52	56.034	ENSPMGG00000016067	upf3b	59	68.712	Periophthalmus_magnuspinnatus
ENSLBEG00000021570	upf3a	100	77.662	ENSPMGG00000012696	upf3a	98	78.407	Periophthalmus_magnuspinnatus
ENSLBEG00000021570	upf3a	80	53.369	ENSPEMG00000019968	-	87	55.172	Peromyscus_maniculatus_bairdii
ENSLBEG00000021570	upf3a	76	68.996	ENSPCIG00000019590	-	80	73.913	Phascolarctos_cinereus
ENSLBEG00000021570	upf3a	100	82.495	ENSPFOG00000013222	upf3a	98	83.297	Poecilia_formosa
ENSLBEG00000021570	upf3a	99	82.456	ENSPLAG00000011960	upf3a	99	82.237	Poecilia_latipinna
ENSLBEG00000021570	upf3a	100	78.616	ENSPMEG00000000836	upf3a	98	79.368	Poecilia_mexicana
ENSLBEG00000021570	upf3a	89	52.315	ENSPPYG00000005536	UPF3A	90	53.704	Pongo_abelii
ENSLBEG00000021570	upf3a	86	45.433	ENSPCOG00000021960	UPF3B	51	70.732	Propithecus_coquereli
ENSLBEG00000021570	upf3a	87	48.956	ENSPVAG00000005656	UPF3A	88	49.180	Pteropus_vampyrus
ENSLBEG00000021570	upf3a	100	84.632	ENSPNYG00000011289	upf3a	98	85.412	Pundamilia_nyererei
ENSLBEG00000021570	upf3a	100	75.711	ENSPNAG00000019532	upf3a	100	76.368	Pygocentrus_nattereri
ENSLBEG00000021570	upf3a	84	46.793	ENSPNAG00000021528	upf3b	54	73.006	Pygocentrus_nattereri
ENSLBEG00000021570	upf3a	72	55.287	ENSRNOG00000017397	Upf3a	81	55.758	Rattus_norvegicus
ENSLBEG00000021570	upf3a	87	52.593	ENSRBIG00000034007	UPF3A	91	53.367	Rhinopithecus_bieti
ENSLBEG00000021570	upf3a	85	53.266	ENSRROG00000012212	UPF3A	84	54.061	Rhinopithecus_roxellana
ENSLBEG00000021570	upf3a	83	47.291	ENSSBOG00000019740	UPF3B	78	71.166	Saimiri_boliviensis_boliviensis
ENSLBEG00000021570	upf3a	83	61.290	ENSSHAG00000009895	UPF3A	94	63.275	Sarcophilus_harrisii
ENSLBEG00000021570	upf3a	100	66.449	ENSSFOG00015021851	upf3a	100	67.188	Scleropages_formosus
ENSLBEG00000021570	upf3a	100	78.969	ENSSMAG00000003858	upf3a	98	80.745	Scophthalmus_maximus
ENSLBEG00000021570	upf3a	53	59.615	ENSSMAG00000012913	upf3b	56	69.143	Scophthalmus_maximus
ENSLBEG00000021570	upf3a	100	85.835	ENSSDUG00000009680	upf3a	98	86.624	Seriola_dumerili
ENSLBEG00000021570	upf3a	100	89.716	ENSSLDG00000009700	upf3a	98	89.670	Seriola_lalandi_dorsalis
ENSLBEG00000021570	upf3a	87	45.176	ENSSPUG00000013082	UPF3B	88	45.972	Sphenodon_punctatus
ENSLBEG00000021570	upf3a	100	87.196	ENSSPAG00000007938	upf3a	98	88.914	Stegastes_partitus
ENSLBEG00000021570	upf3a	83	62.532	ENSTGUG00000009493	UPF3A	99	63.797	Taeniopygia_guttata
ENSLBEG00000021570	upf3a	83	46.154	ENSTGUG00000003413	UPF3B	92	47.837	Taeniopygia_guttata
ENSLBEG00000021570	upf3a	99	80.000	ENSTRUG00000012730	upf3a	99	79.780	Takifugu_rubripes
ENSLBEG00000021570	upf3a	84	78.590	ENSTNIG00000014973	upf3a	100	78.329	Tetraodon_nigroviridis
ENSLBEG00000021570	upf3a	83	47.631	ENSUAMG00000024565	UPF3B	62	66.667	Ursus_americanus
ENSLBEG00000021570	upf3a	83	46.734	ENSVVUG00000011594	UPF3B	77	70.303	Vulpes_vulpes
ENSLBEG00000021570	upf3a	83	45.122	ENSXETG00000007440	upf3b	71	70.122	Xenopus_tropicalis
ENSLBEG00000021570	upf3a	91	56.206	ENSXETG00000002572	upf3a	100	56.206	Xenopus_tropicalis
ENSLBEG00000021570	upf3a	100	82.533	ENSXMAG00000013452	upf3a	98	83.333	Xiphophorus_maculatus