EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000022508 (Gene tree)
Gene ID: 109988579
Gene Symbol: -
Alias: -
Full Name: RNA binding protein fox-1 homolog 3-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 368674 bases
Position: chrFKLU01000142.1:2276-370949
Accession: 109988579
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000029797	Fox-1_C	PF12414.8	5e-45	1	1
ENSLBEP00000029778	Fox-1_C	PF12414.8	5.3e-45	1	1
ENSLBEP00000029752	Fox-1_C	PF12414.8	6.3e-45	1	1
ENSLBEP00000029822	Fox-1_C	PF12414.8	8.4e-45	1	1
ENSLBEP00000029863	Fox-1_C	PF12414.8	2.4e-39	1	1
ENSLBEP00000029863	RRM_1	PF00076.22	1.2e-18	1	1
ENSLBEP00000029822	RRM_1	PF00076.22	1.3e-18	1	1
ENSLBEP00000029778	RRM_1	PF00076.22	1.3e-18	1	1
ENSLBEP00000029752	RRM_1	PF00076.22	1.5e-18	1	1
ENSLBEP00000029797	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000031180	-	1225	XM_020640115	ENSLBEP00000029778	395 (aa)	XP_020495771	-
ENSLBET00000031152	-	1279	XM_020640112	ENSLBEP00000029752	413 (aa)	XP_020495768	-
ENSLBET00000031223	-	1562	XM_020640114	ENSLBEP00000029822	367 (aa)	XP_020495770	UPI0009B4DFFC
ENSLBET00000031264	-	1062	-	ENSLBEP00000029863	353 (aa)	-	-
ENSLBET00000031198	-	1186	-	ENSLBEP00000029797	382 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000022508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000022508's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000022508	-	89	67.733	ENSLBEG00000014659	rbfox1	96	68.406
ENSLBEG00000022508	-	61	72.414	ENSLBEG00000017089	rbfox1l	84	57.276
ENSLBEG00000022508	-	100	86.376	ENSLBEG00000004030	rbfox3b	100	86.376

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000022508	-	81	82.392	ENSG00000167281	RBFOX3	89	93.162	Homo_sapiens
ENSLBEG00000022508	-	100	77.989	ENSAPOG00000015658	-	91	76.694	Acanthochromis_polyacanthus
ENSLBEG00000022508	-	100	85.831	ENSAPOG00000021630	rbfox3b	100	85.831	Acanthochromis_polyacanthus
ENSLBEG00000022508	-	89	79.191	ENSAMEG00000014170	RBFOX3	87	79.769	Ailuropoda_melanoleuca
ENSLBEG00000022508	-	95	80.299	ENSACIG00000003768	-	92	80.299	Amphilophus_citrinellus
ENSLBEG00000022508	-	86	82.484	ENSACIG00000010817	rbfox3b	94	82.274	Amphilophus_citrinellus
ENSLBEG00000022508	-	100	91.008	ENSAOCG00000010786	-	97	91.008	Amphiprion_ocellaris
ENSLBEG00000022508	-	100	85.831	ENSAOCG00000012358	rbfox3b	100	85.831	Amphiprion_ocellaris
ENSLBEG00000022508	-	92	83.056	ENSAPEG00000015891	-	89	83.056	Amphiprion_percula
ENSLBEG00000022508	-	100	77.112	ENSAPEG00000019081	rbfox3b	99	76.567	Amphiprion_percula
ENSLBEG00000022508	-	86	76.744	ENSATEG00000019945	rbfox3b	95	77.508	Anabas_testudineus
ENSLBEG00000022508	-	81	86.333	ENSATEG00000023101	-	92	86.333	Anabas_testudineus
ENSLBEG00000022508	-	98	82.271	ENSACAG00000016093	RBFOX3	100	82.825	Anolis_carolinensis
ENSLBEG00000022508	-	81	81.063	ENSANAG00000023457	RBFOX3	95	81.728	Aotus_nancymaae
ENSLBEG00000022508	-	100	85.286	ENSACLG00000020011	rbfox3b	96	85.559	Astatotilapia_calliptera
ENSLBEG00000022508	-	100	92.098	ENSACLG00000025552	-	100	92.098	Astatotilapia_calliptera
ENSLBEG00000022508	-	97	80.618	ENSAMXG00000042841	rbfox3b	100	80.618	Astyanax_mexicanus
ENSLBEG00000022508	-	100	86.559	ENSAMXG00000037246	rbfox3a	100	86.908	Astyanax_mexicanus
ENSLBEG00000022508	-	76	75.824	ENSBTAG00000006280	RBFOX3	95	70.032	Bos_taurus
ENSLBEG00000022508	-	81	71.429	ENSCJAG00000009563	RBFOX3	96	69.741	Callithrix_jacchus
ENSLBEG00000022508	-	66	90.909	ENSCAFG00000005547	RBFOX3	85	90.909	Canis_familiaris
ENSLBEG00000022508	-	81	70.690	ENSCAFG00020008126	RBFOX3	92	72.126	Canis_lupus_dingo
ENSLBEG00000022508	-	81	70.690	ENSCHIG00000009124	RBFOX3	92	72.126	Capra_hircus
ENSLBEG00000022508	-	81	70.029	ENSTSYG00000029617	RBFOX3	96	70.893	Carlito_syrichta
ENSLBEG00000022508	-	81	69.714	ENSCPOG00000021703	RBFOX3	96	70.571	Cavia_porcellus
ENSLBEG00000022508	-	81	81.063	ENSCCAG00000028450	RBFOX3	95	81.728	Cebus_capucinus
ENSLBEG00000022508	-	81	82.392	ENSCATG00000018349	RBFOX3	95	83.056	Cercocebus_atys
ENSLBEG00000022508	-	81	70.402	ENSCLAG00000006449	RBFOX3	96	71.264	Chinchilla_lanigera
ENSLBEG00000022508	-	81	82.392	ENSCSAG00000002355	RBFOX3	95	83.056	Chlorocebus_sabaeus
ENSLBEG00000022508	-	89	81.902	ENSCPBG00000010904	RBFOX3	98	83.742	Chrysemys_picta_bellii
ENSLBEG00000022508	-	81	82.392	ENSCANG00000043120	RBFOX3	95	83.056	Colobus_angolensis_palliatus
ENSLBEG00000022508	-	81	67.622	ENSCGRG00001019476	Rbfox3	96	70.774	Cricetulus_griseus_chok1gshd
ENSLBEG00000022508	-	81	67.622	ENSCGRG00000003268	Rbfox3	96	70.774	Cricetulus_griseus_crigri
ENSLBEG00000022508	-	100	68.817	ENSCSEG00000020606	RBFOX3	100	68.548	Cynoglossus_semilaevis
ENSLBEG00000022508	-	100	91.826	ENSCSEG00000015567	RBFOX3	97	91.826	Cynoglossus_semilaevis
ENSLBEG00000022508	-	97	80.278	ENSCVAG00000006882	rbfox3b	100	84.450	Cyprinodon_variegatus
ENSLBEG00000022508	-	86	73.016	ENSDARG00000074310	rbfox3b	96	91.192	Danio_rerio
ENSLBEG00000022508	-	100	87.332	ENSDARG00000010083	rbfox3a	100	88.064	Danio_rerio
ENSLBEG00000022508	-	68	72.054	ENSDNOG00000039391	RBFOX3	62	91.803	Dasypus_novemcinctus
ENSLBEG00000022508	-	81	61.850	ENSDORG00000005352	Rbfox3	95	60.983	Dipodomys_ordii
ENSLBEG00000022508	-	83	55.229	ENSEBUG00000013559	RBFOX3	71	62.162	Eptatretus_burgeri
ENSLBEG00000022508	-	97	64.785	ENSEBUG00000002129	RBFOX3	95	70.088	Eptatretus_burgeri
ENSLBEG00000022508	-	81	80.795	ENSEASG00005005059	RBFOX3	95	83.444	Equus_asinus_asinus
ENSLBEG00000022508	-	81	80.464	ENSECAG00000023811	RBFOX3	95	83.113	Equus_caballus
ENSLBEG00000022508	-	72	80.282	ENSEEUG00000013974	RBFOX3	68	88.525	Erinaceus_europaeus
ENSLBEG00000022508	-	100	86.104	ENSELUG00000017963	rbfox3b	100	86.059	Esox_lucius
ENSLBEG00000022508	-	98	82.320	ENSFCAG00000002555	RBFOX3	100	82.873	Felis_catus
ENSLBEG00000022508	-	89	67.131	ENSFALG00000012288	RBFOX3	89	67.671	Ficedula_albicollis
ENSLBEG00000022508	-	81	64.571	ENSFDAG00000007489	RBFOX3	96	68.976	Fukomys_damarensis
ENSLBEG00000022508	-	86	77.389	ENSFHEG00000008550	rbfox3b	95	85.821	Fundulus_heteroclitus
ENSLBEG00000022508	-	86	66.575	ENSGMOG00000019304	-	87	76.552	Gadus_morhua
ENSLBEG00000022508	-	98	84.444	ENSGALG00000032889	RBFOX3	100	84.444	Gallus_gallus
ENSLBEG00000022508	-	100	78.747	ENSGAFG00000005025	rbfox3b	100	78.552	Gambusia_affinis
ENSLBEG00000022508	-	81	78.510	ENSGACG00000002138	-	92	78.510	Gasterosteus_aculeatus
ENSLBEG00000022508	-	98	82.500	ENSGAGG00000020025	RBFOX3	96	84.167	Gopherus_agassizii
ENSLBEG00000022508	-	81	82.392	ENSGGOG00000012546	RBFOX3	95	83.056	Gorilla_gorilla
ENSLBEG00000022508	-	100	85.286	ENSHBUG00000018099	rbfox3b	100	84.182	Haplochromis_burtoni
ENSLBEG00000022508	-	89	91.718	ENSHBUG00000023098	-	95	90.663	Haplochromis_burtoni
ENSLBEG00000022508	-	81	70.170	ENSHGLG00000008679	RBFOX3	96	70.739	Heterocephalus_glaber_female
ENSLBEG00000022508	-	81	66.193	ENSHGLG00100014739	RBFOX3	92	67.045	Heterocephalus_glaber_male
ENSLBEG00000022508	-	86	81.210	ENSHCOG00000001863	RBFOX3	87	80.602	Hippocampus_comes
ENSLBEG00000022508	-	88	72.527	ENSHCOG00000007444	RBFOX3	93	73.514	Hippocampus_comes
ENSLBEG00000022508	-	100	85.445	ENSIPUG00000012010	rbfox3a	100	86.472	Ictalurus_punctatus
ENSLBEG00000022508	-	86	67.919	ENSIPUG00000021966	rbfox3b	98	77.652	Ictalurus_punctatus
ENSLBEG00000022508	-	81	65.902	ENSSTOG00000026817	RBFOX3	95	70.280	Ictidomys_tridecemlineatus
ENSLBEG00000022508	-	81	69.828	ENSJJAG00000014167	Rbfox3	96	71.839	Jaculus_jaculus
ENSLBEG00000022508	-	100	85.559	ENSKMAG00000006726	rbfox3b	100	85.559	Kryptolebias_marmoratus
ENSLBEG00000022508	-	89	73.803	ENSLACG00000018409	-	90	73.803	Latimeria_chalumnae
ENSLBEG00000022508	-	51	58.065	ENSLACG00000000021	-	95	58.152	Latimeria_chalumnae
ENSLBEG00000022508	-	89	90.491	ENSLOCG00000012267	rbfox3a	98	90.491	Lepisosteus_oculatus
ENSLBEG00000022508	-	91	74.328	ENSLAFG00000016623	RBFOX3	90	75.419	Loxodonta_africana
ENSLBEG00000022508	-	81	69.452	ENSMFAG00000002247	RBFOX3	96	70.893	Macaca_fascicularis
ENSLBEG00000022508	-	81	82.392	ENSMMUG00000023028	RBFOX3	95	83.056	Macaca_mulatta
ENSLBEG00000022508	-	81	82.060	ENSMNEG00000041147	RBFOX3	95	82.724	Macaca_nemestrina
ENSLBEG00000022508	-	81	82.392	ENSMLEG00000025686	RBFOX3	95	83.056	Mandrillus_leucophaeus
ENSLBEG00000022508	-	89	89.877	ENSMAMG00000020600	-	93	89.877	Mastacembelus_armatus
ENSLBEG00000022508	-	86	78.981	ENSMAMG00000019810	rbfox3b	94	78.595	Mastacembelus_armatus
ENSLBEG00000022508	-	100	85.286	ENSMZEG00005000781	rbfox3b	100	85.559	Maylandia_zebra
ENSLBEG00000022508	-	90	72.256	ENSMZEG00005003055	-	81	70.833	Maylandia_zebra
ENSLBEG00000022508	-	64	75.546	ENSMGAG00000005600	RBFOX3	98	70.000	Meleagris_gallopavo
ENSLBEG00000022508	-	81	68.966	ENSMAUG00000013543	Rbfox3	96	69.828	Mesocricetus_auratus
ENSLBEG00000022508	-	88	80.982	ENSMICG00000014898	RBFOX3	96	83.056	Microcebus_murinus
ENSLBEG00000022508	-	81	70.690	ENSMOCG00000015373	Rbfox3	96	71.264	Microtus_ochrogaster
ENSLBEG00000022508	-	100	81.081	ENSMMOG00000020193	rbfox3b	100	82.933	Mola_mola
ENSLBEG00000022508	-	98	81.994	ENSMODG00000002089	RBFOX3	100	82.548	Monodelphis_domestica
ENSLBEG00000022508	-	100	95.913	ENSMALG00000018270	-	100	95.913	Monopterus_albus
ENSLBEG00000022508	-	100	85.014	ENSMALG00000020407	rbfox3b	100	85.014	Monopterus_albus
ENSLBEG00000022508	-	81	82.060	MGP_CAROLIEiJ_G0017487	Rbfox3	96	91.367	Mus_caroli
ENSLBEG00000022508	-	81	82.392	ENSMUSG00000025576	Rbfox3	96	91.367	Mus_musculus
ENSLBEG00000022508	-	81	79.801	MGP_PahariEiJ_G0018614	Rbfox3	96	92.086	Mus_pahari
ENSLBEG00000022508	-	81	82.392	MGP_SPRETEiJ_G0018331	Rbfox3	96	91.367	Mus_spretus
ENSLBEG00000022508	-	89	75.410	ENSMPUG00000012319	RBFOX3	95	75.543	Mustela_putorius_furo
ENSLBEG00000022508	-	81	70.690	ENSNGAG00000018006	Rbfox3	96	71.552	Nannospalax_galili
ENSLBEG00000022508	-	97	78.333	ENSNBRG00000010102	rbfox3b	100	83.110	Neolamprologus_brichardi
ENSLBEG00000022508	-	90	82.831	ENSNBRG00000022885	-	91	82.831	Neolamprologus_brichardi
ENSLBEG00000022508	-	86	54.545	ENSNLEG00000000153	-	93	59.441	Nomascus_leucogenys
ENSLBEG00000022508	-	79	85.417	ENSMEUG00000004218	-	96	52.023	Notamacropus_eugenii
ENSLBEG00000022508	-	69	81.967	ENSOPRG00000016279	-	71	85.246	Ochotona_princeps
ENSLBEG00000022508	-	81	82.392	ENSODEG00000009433	RBFOX3	95	82.392	Octodon_degus
ENSLBEG00000022508	-	97	80.556	ENSONIG00000009549	rbfox3b	100	84.718	Oreochromis_niloticus
ENSLBEG00000022508	-	89	91.692	ENSONIG00000007282	-	98	89.851	Oreochromis_niloticus
ENSLBEG00000022508	-	70	62.333	ENSOCUG00000014217	RBFOX3	53	88.525	Oryctolagus_cuniculus
ENSLBEG00000022508	-	100	85.559	ENSORLG00000000905	rbfox3b	79	85.559	Oryzias_latipes
ENSLBEG00000022508	-	100	85.559	ENSORLG00020018030	rbfox3b	99	85.559	Oryzias_latipes_hni
ENSLBEG00000022508	-	100	85.559	ENSORLG00015009200	rbfox3b	99	85.559	Oryzias_latipes_hsok
ENSLBEG00000022508	-	80	79.355	ENSOMEG00000014677	rbfox3b	86	79.205	Oryzias_melastigma
ENSLBEG00000022508	-	89	81.515	ENSOGAG00000029595	RBFOX3	87	82.121	Otolemur_garnettii
ENSLBEG00000022508	-	88	63.897	ENSOARG00000002908	RBFOX3	89	58.356	Ovis_aries
ENSLBEG00000022508	-	76	75.092	ENSPPAG00000025383	RBFOX3	94	82.117	Pan_paniscus
ENSLBEG00000022508	-	81	69.208	ENSPPRG00000007819	RBFOX3	96	71.554	Panthera_pardus
ENSLBEG00000022508	-	81	82.392	ENSPTRG00000009727	RBFOX3	95	83.056	Pan_troglodytes
ENSLBEG00000022508	-	81	82.392	ENSPANG00000019837	RBFOX3	95	83.056	Papio_anubis
ENSLBEG00000022508	-	100	79.891	ENSPKIG00000010299	rbfox3a	99	87.608	Paramormyrops_kingsleyae
ENSLBEG00000022508	-	98	68.232	ENSPKIG00000022633	-	96	68.681	Paramormyrops_kingsleyae
ENSLBEG00000022508	-	87	81.115	ENSPMGG00000008000	rbfox3b	100	82.043	Periophthalmus_magnuspinnatus
ENSLBEG00000022508	-	81	70.690	ENSPEMG00000010500	Rbfox3	96	71.264	Peromyscus_maniculatus_bairdii
ENSLBEG00000022508	-	98	72.059	ENSPCIG00000005766	RBFOX3	95	81.413	Phascolarctos_cinereus
ENSLBEG00000022508	-	97	80.278	ENSPFOG00000018294	rbfox3b	96	84.450	Poecilia_formosa
ENSLBEG00000022508	-	67	86.939	ENSPLAG00000000481	rbfox3b	75	86.939	Poecilia_latipinna
ENSLBEG00000022508	-	86	77.070	ENSPMEG00000022997	rbfox3b	95	85.448	Poecilia_mexicana
ENSLBEG00000022508	-	100	85.054	ENSPREG00000012886	rbfox3b	99	86.141	Poecilia_reticulata
ENSLBEG00000022508	-	83	69.799	ENSPPYG00000008704	RBFOX3	87	81.139	Pongo_abelii
ENSLBEG00000022508	-	81	67.919	ENSPCAG00000001401	RBFOX3	96	69.364	Procavia_capensis
ENSLBEG00000022508	-	86	70.248	ENSPCOG00000012689	RBFOX3	97	70.893	Propithecus_coquereli
ENSLBEG00000022508	-	81	59.483	ENSPVAG00000015243	RBFOX3	96	63.506	Pteropus_vampyrus
ENSLBEG00000022508	-	100	86.376	ENSPNYG00000009079	-	96	86.376	Pundamilia_nyererei
ENSLBEG00000022508	-	100	74.387	ENSPNYG00000010414	rbfox3b	99	74.387	Pundamilia_nyererei
ENSLBEG00000022508	-	86	66.242	ENSPNAG00000018173	rbfox3b	85	75.373	Pygocentrus_nattereri
ENSLBEG00000022508	-	100	86.828	ENSPNAG00000002889	rbfox3a	100	87.798	Pygocentrus_nattereri
ENSLBEG00000022508	-	81	79.801	ENSRNOG00000003386	Rbfox3	95	82.450	Rattus_norvegicus
ENSLBEG00000022508	-	98	82.320	ENSRBIG00000040449	RBFOX3	100	82.873	Rhinopithecus_bieti
ENSLBEG00000022508	-	81	82.392	ENSRROG00000000766	RBFOX3	95	83.056	Rhinopithecus_roxellana
ENSLBEG00000022508	-	81	81.063	ENSSBOG00000031591	RBFOX3	95	81.728	Saimiri_boliviensis_boliviensis
ENSLBEG00000022508	-	89	75.487	ENSSHAG00000016076	RBFOX3	95	81.413	Sarcophilus_harrisii
ENSLBEG00000022508	-	98	69.146	ENSSFOG00015004716	RBFOX3	100	71.625	Scleropages_formosus
ENSLBEG00000022508	-	97	84.270	ENSSFOG00015023260	rbfox3a	100	89.037	Scleropages_formosus
ENSLBEG00000022508	-	100	91.826	ENSSMAG00000019052	-	100	91.826	Scophthalmus_maximus
ENSLBEG00000022508	-	97	76.127	ENSSMAG00000012618	rbfox3b	88	81.122	Scophthalmus_maximus
ENSLBEG00000022508	-	100	89.373	ENSSDUG00000015801	-	98	89.101	Seriola_dumerili
ENSLBEG00000022508	-	86	77.389	ENSSDUG00000023183	rbfox3b	95	85.821	Seriola_dumerili
ENSLBEG00000022508	-	100	86.104	ENSSLDG00000000149	rbfox3b	100	86.104	Seriola_lalandi_dorsalis
ENSLBEG00000022508	-	100	92.643	ENSSLDG00000016098	-	98	92.643	Seriola_lalandi_dorsalis
ENSLBEG00000022508	-	98	73.056	ENSSPUG00000011733	RBFOX3	95	84.053	Sphenodon_punctatus
ENSLBEG00000022508	-	88	81.290	ENSSPAG00000004898	-	88	81.290	Stegastes_partitus
ENSLBEG00000022508	-	100	77.657	ENSSPAG00000017571	rbfox3b	99	77.657	Stegastes_partitus
ENSLBEG00000022508	-	74	86.029	ENSSSCG00000039498	RBFOX3	96	73.354	Sus_scrofa
ENSLBEG00000022508	-	89	79.701	ENSTRUG00000004894	rbfox3b	94	79.701	Takifugu_rubripes
ENSLBEG00000022508	-	92	76.176	ENSTNIG00000011278	rbfox3b	90	76.243	Tetraodon_nigroviridis
ENSLBEG00000022508	-	82	46.866	ENSTBEG00000004296	-	85	51.572	Tupaia_belangeri
ENSLBEG00000022508	-	81	63.977	ENSTTRG00000003676	RBFOX3	96	65.418	Tursiops_truncatus
ENSLBEG00000022508	-	81	83.056	ENSUAMG00000004668	RBFOX3	95	83.721	Ursus_americanus
ENSLBEG00000022508	-	98	83.149	ENSVVUG00000017864	RBFOX3	95	83.389	Vulpes_vulpes
ENSLBEG00000022508	-	89	64.571	ENSXETG00000020236	rbfox3	88	67.143	Xenopus_tropicalis
ENSLBEG00000022508	-	97	79.501	ENSXCOG00000018262	rbfox3b	100	84.298	Xiphophorus_couchianus
ENSLBEG00000022508	-	100	86.376	ENSXMAG00000012939	rbfox3b	100	84.718	Xiphophorus_maculatus