EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000022550 (Gene tree)
Gene ID: 109996690
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 3037 bases
Position: chrFKLU01000379.1:336647-339683
Accession: 109996690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000029901	TUDOR	PF00567.24	0.00024	1	1
ENSLBEP00000029881	TUDOR	PF00567.24	0.00027	1	1
ENSLBEP00000029881	SMN	PF06003.12	1.9e-109	1	1
ENSLBEP00000029901	SMN	PF06003.12	2.1e-107	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000031302	-	819	-	ENSLBEP00000029901	272 (aa)	-	-
ENSLBET00000031282	-	855	XM_020650948	ENSLBEP00000029881	284 (aa)	XP_020506604	-

Gene Model

Click here to download ENSLBEG00000022550's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000022550's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000022550	smn1	94	54.044	ENSG00000172062	SMN1	92	52.174	Homo_sapiens
ENSLBEG00000022550	smn1	94	54.044	ENSG00000205571	SMN2	74	70.588	Homo_sapiens
ENSLBEG00000022550	smn1	100	83.099	ENSAPOG00000011324	smn1	100	83.803	Acanthochromis_polyacanthus
ENSLBEG00000022550	smn1	94	54.015	ENSAMEG00000003316	-	89	51.971	Ailuropoda_melanoleuca
ENSLBEG00000022550	smn1	61	78.443	ENSACIG00000007598	smn1	92	78.571	Amphilophus_citrinellus
ENSLBEG00000022550	smn1	93	77.652	ENSACIG00000019772	-	99	77.652	Amphilophus_citrinellus
ENSLBEG00000022550	smn1	100	83.451	ENSAOCG00000024444	smn1	100	84.155	Amphiprion_ocellaris
ENSLBEG00000022550	smn1	100	83.803	ENSAPEG00000016504	smn1	100	84.507	Amphiprion_percula
ENSLBEG00000022550	smn1	95	83.333	ENSATEG00000002182	smn1	82	83.333	Anabas_testudineus
ENSLBEG00000022550	smn1	69	46.411	ENSAPLG00000010912	-	96	45.274	Anas_platyrhynchos
ENSLBEG00000022550	smn1	98	50.183	ENSACAG00000010017	-	96	50.523	Anolis_carolinensis
ENSLBEG00000022550	smn1	94	51.613	ENSANAG00000032133	-	92	48.375	Aotus_nancymaae
ENSLBEG00000022550	smn1	100	79.779	ENSACLG00000007308	smn1	94	79.286	Astatotilapia_calliptera
ENSLBEG00000022550	smn1	100	61.053	ENSAMXG00000013884	smn1	100	63.986	Astyanax_mexicanus
ENSLBEG00000022550	smn1	94	54.212	ENSBTAG00000005743	SMN2	93	53.405	Bos_taurus
ENSLBEG00000022550	smn1	94	49.632	ENSCJAG00000016290	-	92	48.805	Callithrix_jacchus
ENSLBEG00000022550	smn1	94	54.412	ENSCAFG00000007812	SMN	93	52.688	Canis_familiaris
ENSLBEG00000022550	smn1	94	54.412	ENSCAFG00020019229	-	86	52.688	Canis_lupus_dingo
ENSLBEG00000022550	smn1	94	54.212	ENSCHIG00000015559	-	91	53.214	Capra_hircus
ENSLBEG00000022550	smn1	94	54.015	ENSTSYG00000012058	-	93	53.047	Carlito_syrichta
ENSLBEG00000022550	smn1	81	43.304	ENSCAPG00000011021	-	98	42.672	Cavia_aperea
ENSLBEG00000022550	smn1	94	51.579	ENSCPOG00000036973	-	92	53.237	Cavia_porcellus
ENSLBEG00000022550	smn1	94	51.379	ENSCPOG00000012328	-	93	53.004	Cavia_porcellus
ENSLBEG00000022550	smn1	94	47.232	ENSCCAG00000018127	-	91	48.736	Cebus_capucinus
ENSLBEG00000022550	smn1	94	52.878	ENSCATG00000037002	-	92	51.460	Cercocebus_atys
ENSLBEG00000022550	smn1	94	51.799	ENSCLAG00000000284	-	92	52.482	Chinchilla_lanigera
ENSLBEG00000022550	smn1	94	53.957	ENSCSAG00000015688	-	91	54.417	Chlorocebus_sabaeus
ENSLBEG00000022550	smn1	54	60.265	ENSCHOG00000007346	-	61	60.526	Choloepus_hoffmanni
ENSLBEG00000022550	smn1	96	50.526	ENSCPBG00000010968	-	97	49.064	Chrysemys_picta_bellii
ENSLBEG00000022550	smn1	61	30.583	ENSCING00000014454	-	77	30.052	Ciona_intestinalis
ENSLBEG00000022550	smn1	92	50.566	ENSCANG00000033324	-	94	48.136	Colobus_angolensis_palliatus
ENSLBEG00000022550	smn1	94	54.380	ENSCANG00000038242	-	93	52.574	Colobus_angolensis_palliatus
ENSLBEG00000022550	smn1	94	54.444	ENSCGRG00001017959	-	93	52.768	Cricetulus_griseus_chok1gshd
ENSLBEG00000022550	smn1	94	41.264	ENSCGRG00001016998	-	91	41.912	Cricetulus_griseus_chok1gshd
ENSLBEG00000022550	smn1	94	54.444	ENSCGRG00000007698	Smn1	93	52.768	Cricetulus_griseus_crigri
ENSLBEG00000022550	smn1	98	64.808	ENSCSEG00000015227	smn1	100	62.587	Cynoglossus_semilaevis
ENSLBEG00000022550	smn1	100	80.282	ENSCVAG00000007498	smn1	100	80.282	Cyprinodon_variegatus
ENSLBEG00000022550	smn1	100	64.460	ENSDARG00000018494	smn1	100	60.870	Danio_rerio
ENSLBEG00000022550	smn1	54	54.487	ENSDNOG00000045949	-	66	54.717	Dasypus_novemcinctus
ENSLBEG00000022550	smn1	86	50.000	ENSDNOG00000007283	-	97	49.388	Dasypus_novemcinctus
ENSLBEG00000022550	smn1	94	43.110	ENSDORG00000007082	Smn1	90	43.866	Dipodomys_ordii
ENSLBEG00000022550	smn1	58	48.824	ENSETEG00000001406	-	90	46.196	Echinops_telfairi
ENSLBEG00000022550	smn1	96	39.000	ENSEBUG00000011902	smn1	60	76.667	Eptatretus_burgeri
ENSLBEG00000022550	smn1	92	47.692	ENSEASG00005018000	-	89	48.659	Equus_asinus_asinus
ENSLBEG00000022550	smn1	94	51.504	ENSECAG00000015215	-	93	53.430	Equus_caballus
ENSLBEG00000022550	smn1	91	50.382	ENSEEUG00000015777	-	99	50.775	Erinaceus_europaeus
ENSLBEG00000022550	smn1	100	67.018	ENSELUG00000018067	smn1	100	65.172	Esox_lucius
ENSLBEG00000022550	smn1	94	52.574	ENSFCAG00000028292	SMN	93	51.601	Felis_catus
ENSLBEG00000022550	smn1	98	54.579	ENSFALG00000012320	-	94	53.986	Ficedula_albicollis
ENSLBEG00000022550	smn1	94	48.872	ENSFDAG00000017683	-	92	49.310	Fukomys_damarensis
ENSLBEG00000022550	smn1	98	79.401	ENSFHEG00000018508	smn1	100	79.422	Fundulus_heteroclitus
ENSLBEG00000022550	smn1	100	66.197	ENSGMOG00000017279	smn1	98	64.085	Gadus_morhua
ENSLBEG00000022550	smn1	95	50.896	ENSGALG00000002430	SMN	97	53.030	Gallus_gallus
ENSLBEG00000022550	smn1	100	82.042	ENSGAFG00000009501	smn1	100	82.042	Gambusia_affinis
ENSLBEG00000022550	smn1	100	78.169	ENSGACG00000010584	smn1	97	77.113	Gasterosteus_aculeatus
ENSLBEG00000022550	smn1	78	35.685	ENSGAGG00000013639	-	95	36.029	Gopherus_agassizii
ENSLBEG00000022550	smn1	96	46.316	ENSGAGG00000011374	-	95	53.147	Gopherus_agassizii
ENSLBEG00000022550	smn1	91	49.621	ENSGGOG00000003872	-	93	48.302	Gorilla_gorilla
ENSLBEG00000022550	smn1	53	62.581	ENSGGOG00000026704	-	80	59.064	Gorilla_gorilla
ENSLBEG00000022550	smn1	100	81.338	ENSHBUG00000013987	smn1	100	81.338	Haplochromis_burtoni
ENSLBEG00000022550	smn1	94	48.000	ENSHGLG00000001905	-	94	50.357	Heterocephalus_glaber_female
ENSLBEG00000022550	smn1	94	50.566	ENSHGLG00000001018	-	92	50.883	Heterocephalus_glaber_female
ENSLBEG00000022550	smn1	92	47.955	ENSHGLG00100018676	-	96	50.365	Heterocephalus_glaber_male
ENSLBEG00000022550	smn1	94	50.566	ENSHGLG00100011252	-	92	50.883	Heterocephalus_glaber_male
ENSLBEG00000022550	smn1	94	69.534	ENSHCOG00000017136	smn1	89	73.684	Hippocampus_comes
ENSLBEG00000022550	smn1	100	62.021	ENSIPUG00000012580	smn1	89	64.460	Ictalurus_punctatus
ENSLBEG00000022550	smn1	91	53.030	ENSSTOG00000012288	-	93	51.493	Ictidomys_tridecemlineatus
ENSLBEG00000022550	smn1	50	51.748	ENSJJAG00000014853	-	81	51.875	Jaculus_jaculus
ENSLBEG00000022550	smn1	100	80.488	ENSKMAG00000007239	smn1	100	80.488	Kryptolebias_marmoratus
ENSLBEG00000022550	smn1	99	36.519	ENSLACG00000009808	-	95	36.913	Latimeria_chalumnae
ENSLBEG00000022550	smn1	100	52.174	ENSLOCG00000011339	smn1	100	54.452	Lepisosteus_oculatus
ENSLBEG00000022550	smn1	98	31.818	ENSLOCG00000000801	-	94	31.834	Lepisosteus_oculatus
ENSLBEG00000022550	smn1	94	51.625	ENSLAFG00000003425	-	89	51.429	Loxodonta_africana
ENSLBEG00000022550	smn1	94	48.496	ENSMFAG00000008812	-	91	49.823	Macaca_fascicularis
ENSLBEG00000022550	smn1	94	53.957	ENSMFAG00000031523	SMN1	95	53.091	Macaca_fascicularis
ENSLBEG00000022550	smn1	94	47.744	ENSMMUG00000030594	-	91	49.117	Macaca_mulatta
ENSLBEG00000022550	smn1	94	53.957	ENSMMUG00000020214	SMN1	91	54.417	Macaca_mulatta
ENSLBEG00000022550	smn1	94	53.957	ENSMNEG00000035094	-	92	52.190	Macaca_nemestrina
ENSLBEG00000022550	smn1	79	40.708	ENSMNEG00000036423	-	85	42.241	Macaca_nemestrina
ENSLBEG00000022550	smn1	94	53.957	ENSMLEG00000041902	-	93	52.190	Mandrillus_leucophaeus
ENSLBEG00000022550	smn1	100	81.338	ENSMAMG00000011034	smn1	100	81.338	Mastacembelus_armatus
ENSLBEG00000022550	smn1	100	81.690	ENSMZEG00005013634	smn1	100	81.690	Maylandia_zebra
ENSLBEG00000022550	smn1	72	53.299	ENSMGAG00000008889	-	95	50.490	Meleagris_gallopavo
ENSLBEG00000022550	smn1	58	57.738	ENSMAUG00000010262	Smn1	93	52.399	Mesocricetus_auratus
ENSLBEG00000022550	smn1	56	61.728	ENSMICG00000034708	-	72	61.728	Microcebus_murinus
ENSLBEG00000022550	smn1	94	54.074	ENSMOCG00000017833	Smn1	93	52.399	Microtus_ochrogaster
ENSLBEG00000022550	smn1	96	67.143	ENSMMOG00000005504	smn1	98	62.676	Mola_mola
ENSLBEG00000022550	smn1	94	52.857	ENSMODG00000001436	-	92	55.435	Monodelphis_domestica
ENSLBEG00000022550	smn1	100	82.394	ENSMALG00000008025	smn1	100	82.394	Monopterus_albus
ENSLBEG00000022550	smn1	94	54.815	MGP_CAROLIEiJ_G0018836	Smn1	93	53.137	Mus_caroli
ENSLBEG00000022550	smn1	94	54.444	ENSMUSG00000021645	Smn1	93	52.768	Mus_musculus
ENSLBEG00000022550	smn1	94	55.351	MGP_PahariEiJ_G0015911	Smn1	93	54.945	Mus_pahari
ENSLBEG00000022550	smn1	94	53.409	MGP_SPRETEiJ_G0019718	Smn1	93	52.768	Mus_spretus
ENSLBEG00000022550	smn1	92	53.532	ENSMPUG00000014470	-	93	52.574	Mustela_putorius_furo
ENSLBEG00000022550	smn1	94	53.069	ENSMLUG00000010603	-	89	53.261	Myotis_lucifugus
ENSLBEG00000022550	smn1	94	52.747	ENSNGAG00000019833	Smn1	93	52.688	Nannospalax_galili
ENSLBEG00000022550	smn1	100	83.099	ENSNBRG00000023000	smn1	100	83.099	Neolamprologus_brichardi
ENSLBEG00000022550	smn1	94	53.480	ENSNLEG00000004454	-	92	51.812	Nomascus_leucogenys
ENSLBEG00000022550	smn1	69	50.495	ENSMEUG00000011393	-	100	49.153	Notamacropus_eugenii
ENSLBEG00000022550	smn1	91	47.876	ENSOPRG00000002015	-	100	50.936	Ochotona_princeps
ENSLBEG00000022550	smn1	91	53.788	ENSODEG00000015976	-	91	53.704	Octodon_degus
ENSLBEG00000022550	smn1	100	83.099	ENSONIG00000011799	smn1	100	83.099	Oreochromis_niloticus
ENSLBEG00000022550	smn1	95	46.643	ENSOANG00000001626	-	95	52.797	Ornithorhynchus_anatinus
ENSLBEG00000022550	smn1	94	53.008	ENSOCUG00000026649	-	92	49.650	Oryctolagus_cuniculus
ENSLBEG00000022550	smn1	94	44.484	ENSOCUG00000025183	-	92	44.366	Oryctolagus_cuniculus
ENSLBEG00000022550	smn1	94	53.257	ENSOCUG00000017097	-	92	50.000	Oryctolagus_cuniculus
ENSLBEG00000022550	smn1	100	80.986	ENSORLG00000010552	smn1	100	80.986	Oryzias_latipes
ENSLBEG00000022550	smn1	100	74.737	ENSORLG00020007936	smn1	100	73.333	Oryzias_latipes_hni
ENSLBEG00000022550	smn1	100	80.634	ENSORLG00015022425	smn1	100	80.634	Oryzias_latipes_hsok
ENSLBEG00000022550	smn1	100	80.986	ENSOMEG00000007824	smn1	100	80.986	Oryzias_melastigma
ENSLBEG00000022550	smn1	91	48.315	ENSOGAG00000031414	-	92	46.667	Otolemur_garnettii
ENSLBEG00000022550	smn1	96	52.963	ENSOARG00000005425	-	97	52.000	Ovis_aries
ENSLBEG00000022550	smn1	94	54.044	ENSPPAG00000036640	-	92	52.174	Pan_paniscus
ENSLBEG00000022550	smn1	94	52.574	ENSPPRG00000005575	-	93	52.143	Panthera_pardus
ENSLBEG00000022550	smn1	94	52.941	ENSPTIG00000007745	-	93	52.518	Panthera_tigris_altaica
ENSLBEG00000022550	smn1	94	52.555	ENSPTRG00000016955	-	92	51.812	Pan_troglodytes
ENSLBEG00000022550	smn1	94	49.248	ENSPANG00000000253	-	91	50.530	Papio_anubis
ENSLBEG00000022550	smn1	94	53.763	ENSPANG00000013601	-	91	51.943	Papio_anubis
ENSLBEG00000022550	smn1	100	56.055	ENSPKIG00000011096	smn1	100	57.343	Paramormyrops_kingsleyae
ENSLBEG00000022550	smn1	95	50.735	ENSPSIG00000014787	-	83	51.311	Pelodiscus_sinensis
ENSLBEG00000022550	smn1	98	72.491	ENSPMGG00000012285	smn1	97	72.826	Periophthalmus_magnuspinnatus
ENSLBEG00000022550	smn1	94	41.071	ENSPMAG00000005004	smn1	91	38.163	Petromyzon_marinus
ENSLBEG00000022550	smn1	94	52.857	ENSPCIG00000025764	-	93	55.072	Phascolarctos_cinereus
ENSLBEG00000022550	smn1	100	82.042	ENSPFOG00000007786	smn1	100	82.042	Poecilia_formosa
ENSLBEG00000022550	smn1	100	82.394	ENSPLAG00000012071	smn1	100	82.394	Poecilia_latipinna
ENSLBEG00000022550	smn1	100	82.042	ENSPMEG00000017085	smn1	100	82.042	Poecilia_mexicana
ENSLBEG00000022550	smn1	100	82.042	ENSPREG00000005824	smn1	100	82.042	Poecilia_reticulata
ENSLBEG00000022550	smn1	59	73.077	ENSPPYG00000019189	-	99	37.154	Pongo_abelii
ENSLBEG00000022550	smn1	94	50.951	ENSPPYG00000015533	-	95	50.542	Pongo_abelii
ENSLBEG00000022550	smn1	94	52.256	ENSPCAG00000004187	-	98	50.730	Procavia_capensis
ENSLBEG00000022550	smn1	72	48.500	ENSPCOG00000022307	-	84	46.766	Propithecus_coquereli
ENSLBEG00000022550	smn1	94	55.109	ENSPVAG00000005977	-	92	53.571	Pteropus_vampyrus
ENSLBEG00000022550	smn1	100	83.099	ENSPNYG00000014148	smn1	100	83.099	Pundamilia_nyererei
ENSLBEG00000022550	smn1	100	63.986	ENSPNAG00000014007	smn1	87	63.636	Pygocentrus_nattereri
ENSLBEG00000022550	smn1	94	54.815	ENSRNOG00000018067	Smn1	92	53.137	Rattus_norvegicus
ENSLBEG00000022550	smn1	94	53.957	ENSRBIG00000037052	-	91	51.943	Rhinopithecus_bieti
ENSLBEG00000022550	smn1	97	47.857	ENSRBIG00000036775	-	93	46.503	Rhinopithecus_bieti
ENSLBEG00000022550	smn1	94	48.507	ENSRROG00000031088	-	91	48.897	Rhinopithecus_roxellana
ENSLBEG00000022550	smn1	94	53.957	ENSRROG00000039399	-	92	52.190	Rhinopithecus_roxellana
ENSLBEG00000022550	smn1	94	49.632	ENSSBOG00000011665	-	91	48.736	Saimiri_boliviensis_boliviensis
ENSLBEG00000022550	smn1	52	57.241	ENSSBOG00000020112	-	87	47.200	Saimiri_boliviensis_boliviensis
ENSLBEG00000022550	smn1	94	53.405	ENSSHAG00000001499	-	98	52.899	Sarcophilus_harrisii
ENSLBEG00000022550	smn1	100	60.702	ENSSFOG00015015507	smn1	100	59.655	Scleropages_formosus
ENSLBEG00000022550	smn1	100	78.873	ENSSMAG00000007922	smn1	100	80.986	Scophthalmus_maximus
ENSLBEG00000022550	smn1	100	86.268	ENSSDUG00000018533	smn1	100	86.268	Seriola_dumerili
ENSLBEG00000022550	smn1	100	86.620	ENSSLDG00000021135	smn1	100	86.620	Seriola_lalandi_dorsalis
ENSLBEG00000022550	smn1	96	54.737	ENSSPUG00000000373	-	98	50.000	Sphenodon_punctatus
ENSLBEG00000022550	smn1	100	84.859	ENSSPAG00000004345	smn1	100	85.211	Stegastes_partitus
ENSLBEG00000022550	smn1	94	52.206	ENSSSCG00000016970	-	92	52.482	Sus_scrofa
ENSLBEG00000022550	smn1	57	59.167	ENSSSCG00000029127	-	68	67.647	Sus_scrofa
ENSLBEG00000022550	smn1	93	50.530	ENSTGUG00000001548	-	97	51.071	Taeniopygia_guttata
ENSLBEG00000022550	smn1	100	67.254	ENSTRUG00000000736	smn	100	69.718	Takifugu_rubripes
ENSLBEG00000022550	smn1	100	67.010	ENSTNIG00000009892	smn1	100	69.416	Tetraodon_nigroviridis
ENSLBEG00000022550	smn1	56	60.494	ENSTBEG00000002399	-	78	60.494	Tupaia_belangeri
ENSLBEG00000022550	smn1	56	61.111	ENSTTRG00000005080	-	91	53.846	Tursiops_truncatus
ENSLBEG00000022550	smn1	56	61.111	ENSUAMG00000024947	-	59	61.111	Ursus_americanus
ENSLBEG00000022550	smn1	94	54.745	ENSUMAG00000007842	-	69	52.688	Ursus_maritimus
ENSLBEG00000022550	smn1	91	48.855	ENSVPAG00000009887	-	93	47.925	Vicugna_pacos
ENSLBEG00000022550	smn1	94	54.412	ENSVVUG00000006934	-	93	52.688	Vulpes_vulpes
ENSLBEG00000022550	smn1	95	54.135	ENSXETG00000018189	smn2	95	53.061	Xenopus_tropicalis
ENSLBEG00000022550	smn1	91	34.572	ENSXETG00000004912	-	82	62.069	Xenopus_tropicalis
ENSLBEG00000022550	smn1	100	80.986	ENSXMAG00000001521	smn1	100	80.986	Xiphophorus_maculatus