EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000022974 (Gene tree)
Gene ID: 109983322
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 5636 bases
Position: chrFKLU01000054.1:655111-660746
Accession: 109983322
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000030441	PRP21_like_P	PF12230.8	4e-50	1	1
ENSLBEP00000030441	Surp	PF01805.20	6.9e-46	1	2
ENSLBEP00000030441	Surp	PF01805.20	6.9e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000031850	-	2897	XM_020632966	ENSLBEP00000030441	783 (aa)	XP_020488622	UPI0009B47749

Gene Model

Click here to download ENSLBEG00000022974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000022974's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000022974	sf3a1	99	83.871	ENSG00000099995	SF3A1	100	82.642	Homo_sapiens
ENSLBEG00000022974	sf3a1	100	93.257	ENSAPOG00000020465	sf3a1	100	93.639	Acanthochromis_polyacanthus
ENSLBEG00000022974	sf3a1	97	83.922	ENSAMEG00000007737	SF3A1	100	82.183	Ailuropoda_melanoleuca
ENSLBEG00000022974	sf3a1	100	92.748	ENSACIG00000020672	sf3a1	100	93.130	Amphilophus_citrinellus
ENSLBEG00000022974	sf3a1	100	93.130	ENSAOCG00000003060	sf3a1	100	93.511	Amphiprion_ocellaris
ENSLBEG00000022974	sf3a1	100	93.257	ENSAPEG00000010735	sf3a1	100	93.639	Amphiprion_percula
ENSLBEG00000022974	sf3a1	97	92.288	ENSATEG00000021201	sf3a1	97	92.448	Anabas_testudineus
ENSLBEG00000022974	sf3a1	96	83.905	ENSAPLG00000009057	SF3A1	100	82.992	Anas_platyrhynchos
ENSLBEG00000022974	sf3a1	100	80.593	ENSACAG00000009415	SF3A1	100	80.717	Anolis_carolinensis
ENSLBEG00000022974	sf3a1	99	83.184	ENSANAG00000032045	SF3A1	100	82.642	Aotus_nancymaae
ENSLBEG00000022974	sf3a1	100	92.357	ENSACLG00000012622	sf3a1	100	93.121	Astatotilapia_calliptera
ENSLBEG00000022974	sf3a1	99	87.516	ENSAMXG00000005382	sf3a1	99	88.408	Astyanax_mexicanus
ENSLBEG00000022974	sf3a1	99	83.226	ENSBTAG00000003390	SF3A1	100	82.516	Bos_taurus
ENSLBEG00000022974	sf3a1	80	45.331	WBGene00004188	prp-21	57	51.429	Caenorhabditis_elegans
ENSLBEG00000022974	sf3a1	97	84.052	ENSCJAG00000010370	SF3A1	100	82.516	Callithrix_jacchus
ENSLBEG00000022974	sf3a1	99	82.968	ENSCAFG00000012559	SF3A1	100	82.390	Canis_familiaris
ENSLBEG00000022974	sf3a1	99	82.968	ENSCAFG00020000838	SF3A1	100	82.390	Canis_lupus_dingo
ENSLBEG00000022974	sf3a1	99	83.355	ENSCHIG00000018642	SF3A1	100	82.642	Capra_hircus
ENSLBEG00000022974	sf3a1	99	83.226	ENSTSYG00000004739	SF3A1	100	82.642	Carlito_syrichta
ENSLBEG00000022974	sf3a1	95	67.914	ENSCAPG00000015414	SF3A1	98	67.867	Cavia_aperea
ENSLBEG00000022974	sf3a1	99	83.742	ENSCPOG00000014589	SF3A1	100	82.516	Cavia_porcellus
ENSLBEG00000022974	sf3a1	99	83.184	ENSCCAG00000032006	SF3A1	100	82.642	Cebus_capucinus
ENSLBEG00000022974	sf3a1	99	83.226	ENSCATG00000029241	SF3A1	100	82.642	Cercocebus_atys
ENSLBEG00000022974	sf3a1	97	84.052	ENSCLAG00000006508	SF3A1	100	82.516	Chinchilla_lanigera
ENSLBEG00000022974	sf3a1	99	83.226	ENSCSAG00000009470	SF3A1	100	82.642	Chlorocebus_sabaeus
ENSLBEG00000022974	sf3a1	58	91.667	ENSCHOG00000005201	SF3A1	62	91.250	Choloepus_hoffmanni
ENSLBEG00000022974	sf3a1	100	81.692	ENSCPBG00000007595	SF3A1	100	82.197	Chrysemys_picta_bellii
ENSLBEG00000022974	sf3a1	97	50.459	ENSCSAVG00000005608	-	92	67.018	Ciona_savignyi
ENSLBEG00000022974	sf3a1	99	83.226	ENSCANG00000033564	SF3A1	100	82.642	Colobus_angolensis_palliatus
ENSLBEG00000022974	sf3a1	97	84.211	ENSCGRG00001008933	Sf3a1	100	82.390	Cricetulus_griseus_chok1gshd
ENSLBEG00000022974	sf3a1	97	84.211	ENSCGRG00000006127	Sf3a1	100	82.390	Cricetulus_griseus_crigri
ENSLBEG00000022974	sf3a1	100	89.327	ENSCSEG00000010792	sf3a1	100	89.708	Cynoglossus_semilaevis
ENSLBEG00000022974	sf3a1	100	91.210	ENSCVAG00000004560	sf3a1	100	91.465	Cyprinodon_variegatus
ENSLBEG00000022974	sf3a1	100	86.041	ENSDARG00000041887	sf3a1	100	89.143	Danio_rerio
ENSLBEG00000022974	sf3a1	99	83.119	ENSDNOG00000010629	SF3A1	100	82.286	Dasypus_novemcinctus
ENSLBEG00000022974	sf3a1	99	83.871	ENSDORG00000005613	Sf3a1	100	82.642	Dipodomys_ordii
ENSLBEG00000022974	sf3a1	85	82.459	ENSETEG00000017194	SF3A1	100	80.512	Echinops_telfairi
ENSLBEG00000022974	sf3a1	97	66.374	ENSEBUG00000001285	sf3a1	95	68.428	Eptatretus_burgeri
ENSLBEG00000022974	sf3a1	99	83.120	ENSEASG00005010254	SF3A1	100	82.516	Equus_asinus_asinus
ENSLBEG00000022974	sf3a1	99	83.120	ENSECAG00000023962	SF3A1	100	82.516	Equus_caballus
ENSLBEG00000022974	sf3a1	74	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSLBEG00000022974	sf3a1	100	86.058	ENSELUG00000022578	sf3a1	100	85.805	Esox_lucius
ENSLBEG00000022974	sf3a1	99	82.839	ENSFCAG00000011932	SF3A1	100	82.264	Felis_catus
ENSLBEG00000022974	sf3a1	96	83.223	ENSFALG00000006944	SF3A1	100	81.841	Ficedula_albicollis
ENSLBEG00000022974	sf3a1	99	83.097	ENSFDAG00000009560	SF3A1	100	82.516	Fukomys_damarensis
ENSLBEG00000022974	sf3a1	100	90.724	ENSFHEG00000010866	sf3a1	100	91.741	Fundulus_heteroclitus
ENSLBEG00000022974	sf3a1	100	87.500	ENSGMOG00000016024	sf3a1	100	88.265	Gadus_morhua
ENSLBEG00000022974	sf3a1	96	84.169	ENSGALG00000007937	SF3A1	100	82.093	Gallus_gallus
ENSLBEG00000022974	sf3a1	100	91.592	ENSGAFG00000009111	sf3a1	100	91.975	Gambusia_affinis
ENSLBEG00000022974	sf3a1	100	91.635	ENSGACG00000011893	sf3a1	100	91.635	Gasterosteus_aculeatus
ENSLBEG00000022974	sf3a1	96	81.423	ENSGAGG00000000762	SF3A1	99	81.818	Gopherus_agassizii
ENSLBEG00000022974	sf3a1	99	83.871	ENSGGOG00000012631	SF3A1	100	82.642	Gorilla_gorilla
ENSLBEG00000022974	sf3a1	100	93.248	ENSHBUG00000015795	sf3a1	100	93.248	Haplochromis_burtoni
ENSLBEG00000022974	sf3a1	99	83.097	ENSHGLG00000007907	SF3A1	100	82.516	Heterocephalus_glaber_female
ENSLBEG00000022974	sf3a1	99	83.097	ENSHGLG00100013799	SF3A1	100	82.516	Heterocephalus_glaber_male
ENSLBEG00000022974	sf3a1	100	89.668	ENSHCOG00000015423	sf3a1	100	89.668	Hippocampus_comes
ENSLBEG00000022974	sf3a1	98	84.067	ENSIPUG00000002470	sf3a1	99	85.104	Ictalurus_punctatus
ENSLBEG00000022974	sf3a1	97	84.052	ENSSTOG00000013892	SF3A1	100	82.767	Ictidomys_tridecemlineatus
ENSLBEG00000022974	sf3a1	97	84.052	ENSJJAG00000022566	Sf3a1	100	82.412	Jaculus_jaculus
ENSLBEG00000022974	sf3a1	100	89.822	ENSKMAG00000002400	sf3a1	100	90.840	Kryptolebias_marmoratus
ENSLBEG00000022974	sf3a1	100	82.129	ENSLACG00000003565	SF3A1	100	82.278	Latimeria_chalumnae
ENSLBEG00000022974	sf3a1	100	85.063	ENSLOCG00000008251	sf3a1	99	85.949	Lepisosteus_oculatus
ENSLBEG00000022974	sf3a1	97	55.969	ENSLAFG00000026032	-	97	55.841	Loxodonta_africana
ENSLBEG00000022974	sf3a1	99	83.226	ENSLAFG00000000448	SF3A1	100	82.642	Loxodonta_africana
ENSLBEG00000022974	sf3a1	99	83.355	ENSMFAG00000031979	SF3A1	100	82.767	Macaca_fascicularis
ENSLBEG00000022974	sf3a1	99	83.355	ENSMMUG00000005547	SF3A1	100	82.767	Macaca_mulatta
ENSLBEG00000022974	sf3a1	99	83.484	ENSMNEG00000037229	SF3A1	100	82.893	Macaca_nemestrina
ENSLBEG00000022974	sf3a1	99	83.226	ENSMLEG00000041908	SF3A1	100	82.642	Mandrillus_leucophaeus
ENSLBEG00000022974	sf3a1	98	91.958	ENSMAMG00000006460	sf3a1	96	92.348	Mastacembelus_armatus
ENSLBEG00000022974	sf3a1	100	92.357	ENSMZEG00005009633	sf3a1	100	93.121	Maylandia_zebra
ENSLBEG00000022974	sf3a1	96	84.169	ENSMGAG00000001330	SF3A1	100	83.162	Meleagris_gallopavo
ENSLBEG00000022974	sf3a1	93	79.837	ENSMAUG00000020317	Sf3a1	100	76.709	Mesocricetus_auratus
ENSLBEG00000022974	sf3a1	99	83.376	ENSMICG00000010038	SF3A1	100	81.030	Microcebus_murinus
ENSLBEG00000022974	sf3a1	97	83.791	ENSMOCG00000008438	Sf3a1	100	82.264	Microtus_ochrogaster
ENSLBEG00000022974	sf3a1	100	90.549	ENSMMOG00000015588	sf3a1	99	90.805	Mola_mola
ENSLBEG00000022974	sf3a1	98	83.225	ENSMODG00000009270	SF3A1	100	82.620	Monodelphis_domestica
ENSLBEG00000022974	sf3a1	100	90.863	ENSMALG00000000148	sf3a1	100	92.005	Monopterus_albus
ENSLBEG00000022974	sf3a1	98	83.182	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.576	Mus_caroli
ENSLBEG00000022974	sf3a1	98	83.182	ENSMUSG00000002129	Sf3a1	99	82.576	Mus_musculus
ENSLBEG00000022974	sf3a1	98	83.053	MGP_PahariEiJ_G0016862	Sf3a1	99	82.449	Mus_pahari
ENSLBEG00000022974	sf3a1	98	83.182	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.576	Mus_spretus
ENSLBEG00000022974	sf3a1	99	82.839	ENSMPUG00000013144	SF3A1	100	82.516	Mustela_putorius_furo
ENSLBEG00000022974	sf3a1	99	82.968	ENSMLUG00000002139	SF3A1	100	82.390	Myotis_lucifugus
ENSLBEG00000022974	sf3a1	99	83.760	ENSNGAG00000016977	Sf3a1	100	82.767	Nannospalax_galili
ENSLBEG00000022974	sf3a1	100	92.630	ENSNBRG00000016642	sf3a1	100	92.630	Neolamprologus_brichardi
ENSLBEG00000022974	sf3a1	99	83.226	ENSNLEG00000003686	SF3A1	100	82.642	Nomascus_leucogenys
ENSLBEG00000022974	sf3a1	94	75.815	ENSMEUG00000008741	SF3A1	50	76.115	Notamacropus_eugenii
ENSLBEG00000022974	sf3a1	98	84.436	ENSOPRG00000016636	SF3A1	100	83.417	Ochotona_princeps
ENSLBEG00000022974	sf3a1	98	83.615	ENSODEG00000002571	SF3A1	100	82.620	Octodon_degus
ENSLBEG00000022974	sf3a1	100	93.631	ENSONIG00000010848	sf3a1	100	93.631	Oreochromis_niloticus
ENSLBEG00000022974	sf3a1	97	84.052	ENSOCUG00000007633	SF3A1	100	82.516	Oryctolagus_cuniculus
ENSLBEG00000022974	sf3a1	96	92.154	ENSORLG00000013050	sf3a1	99	92.420	Oryzias_latipes
ENSLBEG00000022974	sf3a1	99	89.615	ENSORLG00020003236	sf3a1	97	90.439	Oryzias_latipes_hni
ENSLBEG00000022974	sf3a1	100	91.847	ENSORLG00015017411	sf3a1	100	92.102	Oryzias_latipes_hsok
ENSLBEG00000022974	sf3a1	100	92.484	ENSOMEG00000013362	sf3a1	100	92.484	Oryzias_melastigma
ENSLBEG00000022974	sf3a1	99	83.484	ENSOGAG00000012931	SF3A1	100	82.893	Otolemur_garnettii
ENSLBEG00000022974	sf3a1	99	81.935	ENSOARG00000006849	SF3A1	100	81.258	Ovis_aries
ENSLBEG00000022974	sf3a1	99	82.968	ENSPPAG00000041790	SF3A1	100	81.761	Pan_paniscus
ENSLBEG00000022974	sf3a1	99	82.839	ENSPPRG00000004391	SF3A1	100	82.264	Panthera_pardus
ENSLBEG00000022974	sf3a1	98	83.333	ENSPTIG00000000844	SF3A1	100	83.333	Panthera_tigris_altaica
ENSLBEG00000022974	sf3a1	99	83.871	ENSPTRG00000014240	SF3A1	100	82.642	Pan_troglodytes
ENSLBEG00000022974	sf3a1	99	83.226	ENSPANG00000020772	SF3A1	100	82.642	Papio_anubis
ENSLBEG00000022974	sf3a1	80	91.209	ENSPSIG00000012803	SF3A1	99	91.209	Pelodiscus_sinensis
ENSLBEG00000022974	sf3a1	97	88.451	ENSPMGG00000023096	sf3a1	100	89.895	Periophthalmus_magnuspinnatus
ENSLBEG00000022974	sf3a1	97	84.079	ENSPEMG00000009494	Sf3a1	100	82.264	Peromyscus_maniculatus_bairdii
ENSLBEG00000022974	sf3a1	71	75.311	ENSPMAG00000007139	-	100	72.727	Petromyzon_marinus
ENSLBEG00000022974	sf3a1	97	83.529	ENSPCIG00000022692	SF3A1	100	82.494	Phascolarctos_cinereus
ENSLBEG00000022974	sf3a1	100	82.061	ENSPFOG00000016768	sf3a1	100	81.980	Poecilia_formosa
ENSLBEG00000022974	sf3a1	100	91.614	ENSPLAG00000017268	sf3a1	100	91.995	Poecilia_latipinna
ENSLBEG00000022974	sf3a1	96	92.133	ENSPMEG00000019811	sf3a1	100	92.133	Poecilia_mexicana
ENSLBEG00000022974	sf3a1	100	91.868	ENSPREG00000010347	sf3a1	100	92.249	Poecilia_reticulata
ENSLBEG00000022974	sf3a1	99	83.226	ENSPPYG00000011707	SF3A1	100	82.642	Pongo_abelii
ENSLBEG00000022974	sf3a1	58	83.471	ENSPCAG00000003266	SF3A1	57	83.471	Procavia_capensis
ENSLBEG00000022974	sf3a1	99	83.119	ENSPCOG00000026630	SF3A1	100	80.905	Propithecus_coquereli
ENSLBEG00000022974	sf3a1	95	83.400	ENSPVAG00000017719	SF3A1	94	83.936	Pteropus_vampyrus
ENSLBEG00000022974	sf3a1	100	93.121	ENSPNYG00000018706	sf3a1	100	93.121	Pundamilia_nyererei
ENSLBEG00000022974	sf3a1	99	86.879	ENSPNAG00000003721	sf3a1	99	87.134	Pygocentrus_nattereri
ENSLBEG00000022974	sf3a1	99	82.839	ENSRNOG00000005218	Sf3a1	99	82.323	Rattus_norvegicus
ENSLBEG00000022974	sf3a1	99	83.226	ENSRBIG00000032167	SF3A1	100	82.642	Rhinopithecus_bieti
ENSLBEG00000022974	sf3a1	99	83.226	ENSRROG00000044908	SF3A1	100	82.642	Rhinopithecus_roxellana
ENSLBEG00000022974	sf3a1	93	84.082	ENSSBOG00000021960	SF3A1	98	84.880	Saimiri_boliviensis_boliviensis
ENSLBEG00000022974	sf3a1	99	78.580	ENSSHAG00000003666	SF3A1	97	81.453	Sarcophilus_harrisii
ENSLBEG00000022974	sf3a1	100	86.599	ENSSFOG00015004579	sf3a1	100	87.611	Scleropages_formosus
ENSLBEG00000022974	sf3a1	100	90.294	ENSSMAG00000004275	sf3a1	100	90.677	Scophthalmus_maximus
ENSLBEG00000022974	sf3a1	100	93.885	ENSSDUG00000022219	sf3a1	100	93.885	Seriola_dumerili
ENSLBEG00000022974	sf3a1	100	93.885	ENSSLDG00000012642	sf3a1	100	93.885	Seriola_lalandi_dorsalis
ENSLBEG00000022974	sf3a1	98	80.879	ENSSARG00000005960	SF3A1	100	80.749	Sorex_araneus
ENSLBEG00000022974	sf3a1	97	83.355	ENSSPUG00000018863	SF3A1	100	82.419	Sphenodon_punctatus
ENSLBEG00000022974	sf3a1	100	94.904	ENSSPAG00000011856	sf3a1	100	94.904	Stegastes_partitus
ENSLBEG00000022974	sf3a1	99	82.968	ENSSSCG00000010002	SF3A1	100	82.516	Sus_scrofa
ENSLBEG00000022974	sf3a1	96	83.926	ENSTGUG00000010547	SF3A1	99	84.094	Taeniopygia_guttata
ENSLBEG00000022974	sf3a1	100	89.400	ENSTRUG00000006118	sf3a1	100	89.272	Takifugu_rubripes
ENSLBEG00000022974	sf3a1	62	86.940	ENSTNIG00000005713	sf3a1	88	87.611	Tetraodon_nigroviridis
ENSLBEG00000022974	sf3a1	99	76.774	ENSTBEG00000012771	SF3A1	100	76.352	Tupaia_belangeri
ENSLBEG00000022974	sf3a1	99	82.861	ENSTTRG00000001535	SF3A1	100	82.286	Tursiops_truncatus
ENSLBEG00000022974	sf3a1	99	80.862	ENSUAMG00000006750	SF3A1	99	81.369	Ursus_americanus
ENSLBEG00000022974	sf3a1	100	82.120	ENSUMAG00000016665	SF3A1	100	82.120	Ursus_maritimus
ENSLBEG00000022974	sf3a1	99	82.968	ENSVVUG00000003075	SF3A1	100	82.390	Vulpes_vulpes
ENSLBEG00000022974	sf3a1	100	77.972	ENSXETG00000016144	sf3a1	96	83.401	Xenopus_tropicalis
ENSLBEG00000022974	sf3a1	100	91.465	ENSXCOG00000015653	sf3a1	100	91.847	Xiphophorus_couchianus
ENSLBEG00000022974	sf3a1	100	91.720	ENSXMAG00000002753	sf3a1	100	92.102	Xiphophorus_maculatus