EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000023196 (Gene tree)
Gene ID: 109986948
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 17354 bases
Position: chrFKLU01000107.1:1139384-1156737
Accession: 109986948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000030714	Rif1_N	PF12231.8	1.5e-79	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000032128	-	8759	XM_020637830	ENSLBEP00000030714	2650 (aa)	XP_020493486	UPI0009B3DA93

Gene Model

Click here to download ENSLBEG00000023196's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000023196's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000023196	rif1	57	55.600	ENSG00000080345	RIF1	97	54.501	Homo_sapiens
ENSLBEG00000023196	rif1	99	59.531	ENSAPOG00000011073	rif1	99	59.575	Acanthochromis_polyacanthus
ENSLBEG00000023196	rif1	60	50.709	ENSAMEG00000008461	RIF1	64	50.709	Ailuropoda_melanoleuca
ENSLBEG00000023196	rif1	81	75.630	ENSACIG00000017765	rif1	97	73.729	Amphilophus_citrinellus
ENSLBEG00000023196	rif1	96	66.094	ENSAOCG00000017231	rif1	94	69.137	Amphiprion_ocellaris
ENSLBEG00000023196	rif1	85	78.653	ENSAPEG00000013228	rif1	96	78.653	Amphiprion_percula
ENSLBEG00000023196	rif1	95	72.831	ENSATEG00000022887	rif1	99	70.558	Anabas_testudineus
ENSLBEG00000023196	rif1	58	53.361	ENSAPLG00000007092	RIF1	68	52.917	Anas_platyrhynchos
ENSLBEG00000023196	rif1	60	49.460	ENSACAG00000003714	RIF1	67	49.265	Anolis_carolinensis
ENSLBEG00000023196	rif1	58	51.971	ENSANAG00000024840	RIF1	62	51.971	Aotus_nancymaae
ENSLBEG00000023196	rif1	69	63.205	ENSAMXG00000010910	rif1	75	63.205	Astyanax_mexicanus
ENSLBEG00000023196	rif1	51	51.426	ENSBTAG00000021020	RIF1	59	52.857	Bos_taurus
ENSLBEG00000023196	rif1	58	52.330	ENSCJAG00000003138	RIF1	62	52.330	Callithrix_jacchus
ENSLBEG00000023196	rif1	59	49.843	ENSCAFG00000005670	RIF1	66	49.843	Canis_familiaris
ENSLBEG00000023196	rif1	62	49.843	ENSCAFG00020016401	RIF1	67	49.843	Canis_lupus_dingo
ENSLBEG00000023196	rif1	58	50.308	ENSCHIG00000020327	RIF1	63	52.143	Capra_hircus
ENSLBEG00000023196	rif1	60	47.717	ENSTSYG00000008861	RIF1	63	47.938	Carlito_syrichta
ENSLBEG00000023196	rif1	60	48.860	ENSCPOG00000037898	RIF1	66	48.706	Cavia_porcellus
ENSLBEG00000023196	rif1	58	52.330	ENSCCAG00000024760	RIF1	60	52.330	Cebus_capucinus
ENSLBEG00000023196	rif1	57	56.800	ENSCATG00000033353	RIF1	61	56.800	Cercocebus_atys
ENSLBEG00000023196	rif1	56	50.810	ENSCLAG00000001517	RIF1	62	50.855	Chinchilla_lanigera
ENSLBEG00000023196	rif1	57	56.400	ENSCSAG00000016089	RIF1	62	56.400	Chlorocebus_sabaeus
ENSLBEG00000023196	rif1	57	50.000	ENSCHOG00000007187	RIF1	59	50.000	Choloepus_hoffmanni
ENSLBEG00000023196	rif1	59	52.271	ENSCPBG00000025885	RIF1	69	52.271	Chrysemys_picta_bellii
ENSLBEG00000023196	rif1	55	57.269	ENSCANG00000028962	RIF1	62	57.269	Colobus_angolensis_palliatus
ENSLBEG00000023196	rif1	61	48.161	ENSCGRG00001024589	Rif1	64	51.020	Cricetulus_griseus_chok1gshd
ENSLBEG00000023196	rif1	60	48.729	ENSCGRG00000010713	Rif1	64	51.020	Cricetulus_griseus_crigri
ENSLBEG00000023196	rif1	96	65.076	ENSCSEG00000003945	rif1	99	65.831	Cynoglossus_semilaevis
ENSLBEG00000023196	rif1	76	73.952	ENSCVAG00000022479	rif1	93	68.783	Cyprinodon_variegatus
ENSLBEG00000023196	rif1	64	63.142	ENSDARG00000062650	rif1	71	63.142	Danio_rerio
ENSLBEG00000023196	rif1	59	48.832	ENSDNOG00000011194	RIF1	61	49.065	Dasypus_novemcinctus
ENSLBEG00000023196	rif1	54	58.407	ENSETEG00000012421	RIF1	59	58.407	Echinops_telfairi
ENSLBEG00000023196	rif1	51	68.750	ENSEASG00005023434	RIF1	58	68.750	Equus_asinus_asinus
ENSLBEG00000023196	rif1	59	56.911	ENSECAG00000012679	RIF1	62	56.911	Equus_caballus
ENSLBEG00000023196	rif1	70	68.249	ENSELUG00000006826	rif1	64	68.249	Esox_lucius
ENSLBEG00000023196	rif1	60	50.591	ENSFCAG00000029742	RIF1	63	50.591	Felis_catus
ENSLBEG00000023196	rif1	60	49.827	ENSFALG00000013874	RIF1	63	53.889	Ficedula_albicollis
ENSLBEG00000023196	rif1	59	50.396	ENSFDAG00000006538	RIF1	63	50.795	Fukomys_damarensis
ENSLBEG00000023196	rif1	97	64.437	ENSFHEG00000013721	rif1	99	70.596	Fundulus_heteroclitus
ENSLBEG00000023196	rif1	61	67.391	ENSGMOG00000003517	rif1	99	67.391	Gadus_morhua
ENSLBEG00000023196	rif1	52	52.080	ENSGALG00000012484	RIF1	64	52.080	Gallus_gallus
ENSLBEG00000023196	rif1	88	75.924	ENSGAFG00000017196	rif1	98	75.924	Gambusia_affinis
ENSLBEG00000023196	rif1	75	80.085	ENSGACG00000008579	rif1	91	80.252	Gasterosteus_aculeatus
ENSLBEG00000023196	rif1	59	52.045	ENSGAGG00000012595	RIF1	61	60.000	Gopherus_agassizii
ENSLBEG00000023196	rif1	51	59.275	ENSGGOG00000040178	RIF1	57	59.275	Gorilla_gorilla
ENSLBEG00000023196	rif1	94	70.442	ENSHBUG00000007125	rif1	99	69.919	Haplochromis_burtoni
ENSLBEG00000023196	rif1	54	50.198	ENSHGLG00100009807	RIF1	63	50.353	Heterocephalus_glaber_male
ENSLBEG00000023196	rif1	57	66.099	ENSHCOG00000015943	rif1	57	65.313	Hippocampus_comes
ENSLBEG00000023196	rif1	69	62.832	ENSIPUG00000021703	rif1	74	62.832	Ictalurus_punctatus
ENSLBEG00000023196	rif1	57	51.458	ENSSTOG00000020712	RIF1	62	52.397	Ictidomys_tridecemlineatus
ENSLBEG00000023196	rif1	58	49.035	ENSJJAG00000023000	Rif1	65	48.930	Jaculus_jaculus
ENSLBEG00000023196	rif1	99	63.186	ENSKMAG00000002852	rif1	99	69.730	Kryptolebias_marmoratus
ENSLBEG00000023196	rif1	59	54.732	ENSLACG00000005425	RIF1	66	54.732	Latimeria_chalumnae
ENSLBEG00000023196	rif1	67	62.457	ENSLOCG00000002657	rif1	78	64.164	Lepisosteus_oculatus
ENSLBEG00000023196	rif1	60	50.038	ENSLAFG00000009796	RIF1	65	50.038	Loxodonta_africana
ENSLBEG00000023196	rif1	57	56.400	ENSMFAG00000032233	RIF1	61	56.400	Macaca_fascicularis
ENSLBEG00000023196	rif1	57	56.400	ENSMMUG00000008611	RIF1	61	56.400	Macaca_mulatta
ENSLBEG00000023196	rif1	57	56.400	ENSMNEG00000031616	RIF1	61	56.400	Macaca_nemestrina
ENSLBEG00000023196	rif1	57	56.400	ENSMLEG00000042945	RIF1	61	56.400	Mandrillus_leucophaeus
ENSLBEG00000023196	rif1	75	67.559	ENSMAMG00000001745	rif1	86	66.896	Mastacembelus_armatus
ENSLBEG00000023196	rif1	84	76.075	ENSMZEG00005020920	rif1	97	76.006	Maylandia_zebra
ENSLBEG00000023196	rif1	54	58.750	ENSMGAG00000012732	RIF1	69	52.353	Meleagris_gallopavo
ENSLBEG00000023196	rif1	55	65.616	ENSMAUG00000013158	Rif1	63	65.616	Mesocricetus_auratus
ENSLBEG00000023196	rif1	59	50.790	ENSMICG00000046127	RIF1	63	50.869	Microcebus_murinus
ENSLBEG00000023196	rif1	57	51.361	ENSMOCG00000009381	Rif1	63	51.361	Microtus_ochrogaster
ENSLBEG00000023196	rif1	96	63.560	ENSMMOG00000006519	rif1	99	63.406	Mola_mola
ENSLBEG00000023196	rif1	62	50.993	ENSMODG00000003703	RIF1	70	50.993	Monodelphis_domestica
ENSLBEG00000023196	rif1	84	67.720	ENSMALG00000016759	rif1	99	65.294	Monopterus_albus
ENSLBEG00000023196	rif1	55	52.896	MGP_CAROLIEiJ_G0023555	Rif1	62	52.896	Mus_caroli
ENSLBEG00000023196	rif1	58	51.331	ENSMUSG00000036202	Rif1	62	51.331	Mus_musculus
ENSLBEG00000023196	rif1	57	47.673	MGP_PahariEiJ_G0025006	Rif1	63	48.589	Mus_pahari
ENSLBEG00000023196	rif1	55	51.527	MGP_SPRETEiJ_G0024476	Rif1	70	51.527	Mus_spretus
ENSLBEG00000023196	rif1	60	50.476	ENSMPUG00000000371	RIF1	63	50.476	Mustela_putorius_furo
ENSLBEG00000023196	rif1	59	49.730	ENSNGAG00000009268	Rif1	67	49.884	Nannospalax_galili
ENSLBEG00000023196	rif1	87	72.354	ENSNBRG00000014257	rif1	99	73.149	Neolamprologus_brichardi
ENSLBEG00000023196	rif1	57	51.639	ENSNLEG00000010955	RIF1	60	51.639	Nomascus_leucogenys
ENSLBEG00000023196	rif1	56	50.342	ENSODEG00000003950	RIF1	64	48.456	Octodon_degus
ENSLBEG00000023196	rif1	94	70.501	ENSONIG00000013657	rif1	99	66.995	Oreochromis_niloticus
ENSLBEG00000023196	rif1	63	48.173	ENSOCUG00000017435	RIF1	63	50.000	Oryctolagus_cuniculus
ENSLBEG00000023196	rif1	83	64.963	ENSORLG00020001302	rif1	93	65.211	Oryzias_latipes_hni
ENSLBEG00000023196	rif1	83	65.892	ENSORLG00015000009	rif1	92	65.712	Oryzias_latipes_hsok
ENSLBEG00000023196	rif1	83	64.710	ENSOMEG00000021513	rif1	91	64.990	Oryzias_melastigma
ENSLBEG00000023196	rif1	59	49.804	ENSOGAG00000006141	RIF1	63	49.804	Otolemur_garnettii
ENSLBEG00000023196	rif1	58	50.653	ENSOARG00000008930	RIF1	63	52.143	Ovis_aries
ENSLBEG00000023196	rif1	57	56.790	ENSPPAG00000023754	RIF1	60	56.790	Pan_paniscus
ENSLBEG00000023196	rif1	60	50.591	ENSPPRG00000003618	RIF1	63	50.591	Panthera_pardus
ENSLBEG00000023196	rif1	60	50.591	ENSPTIG00000020652	RIF1	63	50.591	Panthera_tigris_altaica
ENSLBEG00000023196	rif1	57	55.600	ENSPTRG00000012534	RIF1	60	55.600	Pan_troglodytes
ENSLBEG00000023196	rif1	57	56.400	ENSPANG00000008525	RIF1	61	56.400	Papio_anubis
ENSLBEG00000023196	rif1	85	56.242	ENSPKIG00000004267	rif1	78	58.113	Paramormyrops_kingsleyae
ENSLBEG00000023196	rif1	66	76.119	ENSPMGG00000016141	rif1	85	76.119	Periophthalmus_magnuspinnatus
ENSLBEG00000023196	rif1	58	49.922	ENSPEMG00000000446	Rif1	63	50.680	Peromyscus_maniculatus_bairdii
ENSLBEG00000023196	rif1	61	50.949	ENSPCIG00000009185	RIF1	66	50.554	Phascolarctos_cinereus
ENSLBEG00000023196	rif1	82	65.883	ENSPFOG00000000554	-	98	65.283	Poecilia_formosa
ENSLBEG00000023196	rif1	89	67.106	ENSPFOG00000017804	rif1	98	66.510	Poecilia_formosa
ENSLBEG00000023196	rif1	83	68.979	ENSPLAG00000017945	rif1	94	71.317	Poecilia_latipinna
ENSLBEG00000023196	rif1	80	64.817	ENSPMEG00000006897	-	98	64.281	Poecilia_mexicana
ENSLBEG00000023196	rif1	86	65.852	ENSPREG00000018052	rif1	94	73.397	Poecilia_reticulata
ENSLBEG00000023196	rif1	57	56.000	ENSPPYG00000012846	RIF1	61	56.000	Pongo_abelii
ENSLBEG00000023196	rif1	61	50.514	ENSPCOG00000027888	RIF1	66	50.593	Propithecus_coquereli
ENSLBEG00000023196	rif1	52	60.489	ENSPVAG00000014276	RIF1	58	60.489	Pteropus_vampyrus
ENSLBEG00000023196	rif1	87	73.031	ENSPNYG00000012940	rif1	99	72.962	Pundamilia_nyererei
ENSLBEG00000023196	rif1	68	63.444	ENSPNAG00000016685	rif1	72	63.444	Pygocentrus_nattereri
ENSLBEG00000023196	rif1	55	49.237	ENSRNOG00000054901	Rif1	62	51.751	Rattus_norvegicus
ENSLBEG00000023196	rif1	58	50.403	ENSRBIG00000003704	RIF1	62	50.564	Rhinopithecus_bieti
ENSLBEG00000023196	rif1	59	50.833	ENSRROG00000028206	RIF1	63	50.833	Rhinopithecus_roxellana
ENSLBEG00000023196	rif1	55	55.952	ENSSBOG00000029530	RIF1	61	54.651	Saimiri_boliviensis_boliviensis
ENSLBEG00000023196	rif1	58	51.079	ENSSHAG00000018552	RIF1	65	51.079	Sarcophilus_harrisii
ENSLBEG00000023196	rif1	69	61.607	ENSSFOG00015021539	rif1	81	61.607	Scleropages_formosus
ENSLBEG00000023196	rif1	95	72.786	ENSSDUG00000015632	rif1	99	76.982	Seriola_dumerili
ENSLBEG00000023196	rif1	93	74.675	ENSSLDG00000019531	rif1	99	71.805	Seriola_lalandi_dorsalis
ENSLBEG00000023196	rif1	55	53.282	ENSSPUG00000003062	RIF1	64	54.826	Sphenodon_punctatus
ENSLBEG00000023196	rif1	57	76.493	ENSSPAG00000018359	rif1	95	76.493	Stegastes_partitus
ENSLBEG00000023196	rif1	59	51.730	ENSSSCG00000016395	RIF1	63	51.808	Sus_scrofa
ENSLBEG00000023196	rif1	70	71.045	ENSTRUG00000015808	rif1	91	71.045	Takifugu_rubripes
ENSLBEG00000023196	rif1	71	67.009	ENSTNIG00000011538	rif1	79	68.082	Tetraodon_nigroviridis
ENSLBEG00000023196	rif1	50	54.379	ENSTBEG00000016082	RIF1	54	54.379	Tupaia_belangeri
ENSLBEG00000023196	rif1	59	50.903	ENSTTRG00000011190	RIF1	63	50.903	Tursiops_truncatus
ENSLBEG00000023196	rif1	51	47.919	ENSUAMG00000026385	RIF1	60	47.919	Ursus_americanus
ENSLBEG00000023196	rif1	60	49.843	ENSUMAG00000000337	RIF1	64	49.843	Ursus_maritimus
ENSLBEG00000023196	rif1	60	49.923	ENSVPAG00000002162	RIF1	62	50.515	Vicugna_pacos
ENSLBEG00000023196	rif1	59	50.235	ENSVVUG00000011293	RIF1	63	50.235	Vulpes_vulpes
ENSLBEG00000023196	rif1	60	53.169	ENSXETG00000004530	rif1	63	54.717	Xenopus_tropicalis
ENSLBEG00000023196	rif1	89	61.360	ENSXMAG00000000506	rif1	98	61.176	Xiphophorus_maculatus