EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000026643 (Gene tree)
Gene ID: 109994877
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 15425 bases
Position: chrFKLU01000010.1:1885323-1900747
Accession: 109994877
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000035500	MMR_HSR1	PF01926.23	1.7e-08	1	1
ENSLBEP00000035491	MMR_HSR1	PF01926.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000036991	-	4105	XM_020648384	ENSLBEP00000035491	483 (aa)	XP_020504040	UPI0009B493A2
ENSLBET00000037001	-	4069	XM_020648391	ENSLBEP00000035500	471 (aa)	XP_020504047	UPI0009B307E5

Gene Model

Click here to download ENSLBEG00000026643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000026643's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000026643	srl	52	39.184	ENSLBEG00000004961	-	55	35.235
ENSLBEG00000026643	srl	97	74.510	ENSLBEG00000013811	SRL	99	74.728
ENSLBEG00000026643	srl	87	31.954	ENSLBEG00000018343	ehd2b	74	32.861
ENSLBEG00000026643	srl	84	31.646	ENSLBEG00000020127	ehd4	70	31.646
ENSLBEG00000026643	srl	79	33.780	ENSLBEG00000009464	ehd3	69	34.026
ENSLBEG00000026643	srl	83	31.795	ENSLBEG00000004390	ehd1a	70	31.795

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000026643	srl	97	81.099	ENSG00000185739	SRL	99	83.023	Homo_sapiens
ENSLBEG00000026643	srl	100	95.754	ENSAPOG00000018093	srl	100	95.754	Acanthochromis_polyacanthus
ENSLBEG00000026643	srl	95	76.339	ENSAPOG00000012432	SRL	99	76.339	Acanthochromis_polyacanthus
ENSLBEG00000026643	srl	98	80.260	ENSAMEG00000010862	SRL	52	80.260	Ailuropoda_melanoleuca
ENSLBEG00000026643	srl	94	75.730	ENSACIG00000015419	SRL	99	75.730	Amphilophus_citrinellus
ENSLBEG00000026643	srl	96	96.231	ENSACIG00000015799	srl	100	96.231	Amphilophus_citrinellus
ENSLBEG00000026643	srl	97	75.435	ENSAOCG00000017049	SRL	100	75.652	Amphiprion_ocellaris
ENSLBEG00000026643	srl	92	97.005	ENSAOCG00000007574	srl	100	97.005	Amphiprion_ocellaris
ENSLBEG00000026643	srl	100	95.966	ENSAPEG00000006911	srl	100	95.966	Amphiprion_percula
ENSLBEG00000026643	srl	97	71.678	ENSAPEG00000006533	SRL	100	72.826	Amphiprion_percula
ENSLBEG00000026643	srl	100	95.329	ENSATEG00000024315	srl	100	95.329	Anabas_testudineus
ENSLBEG00000026643	srl	97	75.641	ENSATEG00000009643	SRL	53	76.906	Anabas_testudineus
ENSLBEG00000026643	srl	94	83.664	ENSACAG00000016380	SRL	89	80.738	Anolis_carolinensis
ENSLBEG00000026643	srl	97	73.504	ENSACLG00000024674	SRL	54	77.750	Astatotilapia_calliptera
ENSLBEG00000026643	srl	100	95.966	ENSACLG00000027685	srl	100	95.966	Astatotilapia_calliptera
ENSLBEG00000026643	srl	100	91.507	ENSAMXG00000018789	srl	92	91.507	Astyanax_mexicanus
ENSLBEG00000026643	srl	93	74.208	ENSAMXG00000038693	SRL	100	73.510	Astyanax_mexicanus
ENSLBEG00000026643	srl	96	82.483	ENSBTAG00000001078	SRL	57	82.483	Bos_taurus
ENSLBEG00000026643	srl	94	82.805	ENSCJAG00000019750	SRL	100	79.915	Callithrix_jacchus
ENSLBEG00000026643	srl	97	80.568	ENSCAFG00000019233	SRL	85	80.568	Canis_familiaris
ENSLBEG00000026643	srl	97	80.702	ENSCAFG00020025024	SRL	56	80.702	Canis_lupus_dingo
ENSLBEG00000026643	srl	99	80.603	ENSCHIG00000017927	SRL	56	82.483	Capra_hircus
ENSLBEG00000026643	srl	100	80.127	ENSTSYG00000007919	SRL	99	83.721	Carlito_syrichta
ENSLBEG00000026643	srl	96	81.538	ENSCPOG00000012643	SRL	100	80.508	Cavia_porcellus
ENSLBEG00000026643	srl	94	77.602	ENSCCAG00000032646	SRL	100	84.169	Cebus_capucinus
ENSLBEG00000026643	srl	97	81.099	ENSCATG00000032227	-	100	79.915	Cercocebus_atys
ENSLBEG00000026643	srl	96	81.758	ENSCLAG00000016242	SRL	100	80.720	Chinchilla_lanigera
ENSLBEG00000026643	srl	82	85.714	ENSCHOG00000001618	SRL	52	85.714	Choloepus_hoffmanni
ENSLBEG00000026643	srl	96	85.233	ENSCPBG00000026371	SRL	99	80.335	Chrysemys_picta_bellii
ENSLBEG00000026643	srl	91	58.837	ENSCING00000005231	-	93	59.952	Ciona_intestinalis
ENSLBEG00000026643	srl	97	81.099	ENSCANG00000035872	SRL	99	83.023	Colobus_angolensis_palliatus
ENSLBEG00000026643	srl	96	82.743	ENSCGRG00001016630	Srl	100	81.144	Cricetulus_griseus_chok1gshd
ENSLBEG00000026643	srl	96	82.743	ENSCGRG00000005458	Srl	100	81.144	Cricetulus_griseus_crigri
ENSLBEG00000026643	srl	100	95.117	ENSCSEG00000016151	srl	100	95.117	Cynoglossus_semilaevis
ENSLBEG00000026643	srl	99	73.036	ENSCSEG00000011866	SRL	95	73.248	Cynoglossus_semilaevis
ENSLBEG00000026643	srl	100	93.631	ENSCVAG00000003513	srl	100	93.631	Cyprinodon_variegatus
ENSLBEG00000026643	srl	97	75.053	ENSCVAG00000022465	SRL	62	75.053	Cyprinodon_variegatus
ENSLBEG00000026643	srl	80	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSLBEG00000026643	srl	100	90.870	ENSDARG00000104587	srl	100	90.870	Danio_rerio
ENSLBEG00000026643	srl	94	83.032	ENSDNOG00000011643	SRL	54	81.858	Dasypus_novemcinctus
ENSLBEG00000026643	srl	96	82.561	ENSDORG00000014807	Srl	100	81.144	Dipodomys_ordii
ENSLBEG00000026643	srl	79	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSLBEG00000026643	srl	95	81.737	ENSEASG00005000942	SRL	54	81.596	Equus_asinus_asinus
ENSLBEG00000026643	srl	99	80.297	ENSECAG00000024219	SRL	99	80.297	Equus_caballus
ENSLBEG00000026643	srl	100	86.448	ENSELUG00000015616	srl	100	86.448	Esox_lucius
ENSLBEG00000026643	srl	100	79.281	ENSFCAG00000022075	SRL	100	79.915	Felis_catus
ENSLBEG00000026643	srl	96	81.333	ENSFALG00000004328	SRL	64	81.333	Ficedula_albicollis
ENSLBEG00000026643	srl	96	82.781	ENSFDAG00000006199	SRL	100	81.568	Fukomys_damarensis
ENSLBEG00000026643	srl	100	73.608	ENSFHEG00000011854	SRL	99	76.786	Fundulus_heteroclitus
ENSLBEG00000026643	srl	100	93.631	ENSFHEG00000011239	srl	100	93.631	Fundulus_heteroclitus
ENSLBEG00000026643	srl	94	91.189	ENSGMOG00000014954	srl	100	91.189	Gadus_morhua
ENSLBEG00000026643	srl	99	80.679	ENSGALG00000038884	SRL	99	80.679	Gallus_gallus
ENSLBEG00000026643	srl	100	94.055	ENSGAFG00000000010	srl	100	94.055	Gambusia_affinis
ENSLBEG00000026643	srl	94	78.202	ENSGAFG00000016984	SRL	99	78.202	Gambusia_affinis
ENSLBEG00000026643	srl	94	96.264	ENSGACG00000011332	srl	100	96.264	Gasterosteus_aculeatus
ENSLBEG00000026643	srl	97	81.099	ENSGGOG00000011312	-	100	79.704	Gorilla_gorilla
ENSLBEG00000026643	srl	97	73.932	ENSHBUG00000015710	SRL	58	73.932	Haplochromis_burtoni
ENSLBEG00000026643	srl	100	95.966	ENSHBUG00000007581	srl	100	95.966	Haplochromis_burtoni
ENSLBEG00000026643	srl	96	82.198	ENSHGLG00000015271	SRL	100	81.144	Heterocephalus_glaber_female
ENSLBEG00000026643	srl	96	82.198	ENSHGLG00100019378	SRL	100	81.144	Heterocephalus_glaber_male
ENSLBEG00000026643	srl	94	75.385	ENSHCOG00000001012	SRL	50	75.385	Hippocampus_comes
ENSLBEG00000026643	srl	100	93.856	ENSHCOG00000008687	srl	99	95.730	Hippocampus_comes
ENSLBEG00000026643	srl	100	90.658	ENSIPUG00000012513	srl	100	90.658	Ictalurus_punctatus
ENSLBEG00000026643	srl	93	70.183	ENSIPUG00000011609	SRL	95	70.183	Ictalurus_punctatus
ENSLBEG00000026643	srl	96	82.301	ENSSTOG00000021151	-	100	80.720	Ictidomys_tridecemlineatus
ENSLBEG00000026643	srl	100	81.780	ENSJJAG00000016400	Srl	100	81.780	Jaculus_jaculus
ENSLBEG00000026643	srl	94	76.871	ENSKMAG00000019537	SRL	100	76.871	Kryptolebias_marmoratus
ENSLBEG00000026643	srl	98	93.709	ENSKMAG00000014115	srl	93	95.724	Kryptolebias_marmoratus
ENSLBEG00000026643	srl	100	80.331	ENSLACG00000002825	SRL	99	82.927	Latimeria_chalumnae
ENSLBEG00000026643	srl	99	87.580	ENSLOCG00000002644	srl	99	87.580	Lepisosteus_oculatus
ENSLBEG00000026643	srl	96	81.637	ENSLAFG00000006329	SRL	51	81.637	Loxodonta_africana
ENSLBEG00000026643	srl	91	83.023	ENSMFAG00000037383	SRL	99	83.023	Macaca_fascicularis
ENSLBEG00000026643	srl	97	81.004	ENSMNEG00000019236	-	97	80.786	Macaca_nemestrina
ENSLBEG00000026643	srl	97	74.505	ENSMLEG00000032156	SRL	100	73.573	Mandrillus_leucophaeus
ENSLBEG00000026643	srl	99	93.148	ENSMAMG00000023322	srl	99	93.148	Mastacembelus_armatus
ENSLBEG00000026643	srl	95	75.163	ENSMAMG00000013756	SRL	54	75.163	Mastacembelus_armatus
ENSLBEG00000026643	srl	97	73.718	ENSMZEG00005004010	SRL	59	73.718	Maylandia_zebra
ENSLBEG00000026643	srl	100	95.966	ENSMZEG00005004548	srl	100	95.966	Maylandia_zebra
ENSLBEG00000026643	srl	96	81.718	ENSMGAG00000009342	SRL	96	83.377	Meleagris_gallopavo
ENSLBEG00000026643	srl	96	82.522	ENSMICG00000032307	SRL	100	80.973	Microcebus_murinus
ENSLBEG00000026643	srl	100	80.297	ENSMOCG00000008208	Srl	100	80.297	Microtus_ochrogaster
ENSLBEG00000026643	srl	94	75.165	ENSMMOG00000021572	SRL	99	75.165	Mola_mola
ENSLBEG00000026643	srl	96	95.778	ENSMMOG00000013970	srl	100	95.778	Mola_mola
ENSLBEG00000026643	srl	96	83.111	ENSMODG00000016380	-	51	83.111	Monodelphis_domestica
ENSLBEG00000026643	srl	100	93.631	ENSMALG00000005039	srl	100	93.631	Monopterus_albus
ENSLBEG00000026643	srl	89	77.566	ENSMALG00000000670	SRL	98	77.566	Monopterus_albus
ENSLBEG00000026643	srl	96	83.077	MGP_CAROLIEiJ_G0020400	Srl	100	82.203	Mus_caroli
ENSLBEG00000026643	srl	96	83.077	ENSMUSG00000022519	Srl	100	82.203	Mus_musculus
ENSLBEG00000026643	srl	96	83.077	MGP_SPRETEiJ_G0021294	Srl	100	82.203	Mus_spretus
ENSLBEG00000026643	srl	96	81.416	ENSMPUG00000015025	SRL	55	81.416	Mustela_putorius_furo
ENSLBEG00000026643	srl	96	82.301	ENSMLUG00000030733	SRL	57	82.301	Myotis_lucifugus
ENSLBEG00000026643	srl	96	82.198	ENSNGAG00000019741	Srl	100	81.356	Nannospalax_galili
ENSLBEG00000026643	srl	100	95.966	ENSNBRG00000023775	srl	100	95.966	Neolamprologus_brichardi
ENSLBEG00000026643	srl	97	73.291	ENSNBRG00000002422	SRL	56	75.926	Neolamprologus_brichardi
ENSLBEG00000026643	srl	97	75.824	ENSNLEG00000029051	SRL	100	74.419	Nomascus_leucogenys
ENSLBEG00000026643	srl	96	76.327	ENSOPRG00000000477	-	53	76.327	Ochotona_princeps
ENSLBEG00000026643	srl	96	81.978	ENSODEG00000013256	SRL	100	80.932	Octodon_degus
ENSLBEG00000026643	srl	100	95.445	ENSONIG00000005192	srl	100	95.445	Oreochromis_niloticus
ENSLBEG00000026643	srl	96	81.637	ENSOCUG00000025140	SRL	50	81.637	Oryctolagus_cuniculus
ENSLBEG00000026643	srl	95	74.330	ENSORLG00000015064	SRL	98	74.330	Oryzias_latipes
ENSLBEG00000026643	srl	100	95.329	ENSORLG00000008291	srl	97	95.329	Oryzias_latipes
ENSLBEG00000026643	srl	95	74.554	ENSORLG00020018173	SRL	98	74.554	Oryzias_latipes_hni
ENSLBEG00000026643	srl	100	95.754	ENSORLG00020019784	srl	85	95.754	Oryzias_latipes_hni
ENSLBEG00000026643	srl	100	95.329	ENSORLG00015009342	srl	97	95.329	Oryzias_latipes_hsok
ENSLBEG00000026643	srl	95	74.554	ENSORLG00015019063	SRL	98	74.554	Oryzias_latipes_hsok
ENSLBEG00000026643	srl	95	73.043	ENSOMEG00000005682	SRL	53	73.319	Oryzias_melastigma
ENSLBEG00000026643	srl	100	95.329	ENSOMEG00000010006	srl	100	95.329	Oryzias_melastigma
ENSLBEG00000026643	srl	96	81.416	ENSOGAG00000029266	SRL	54	82.207	Otolemur_garnettii
ENSLBEG00000026643	srl	97	81.838	ENSOARG00000003074	SRL	58	80.603	Ovis_aries
ENSLBEG00000026643	srl	97	81.099	ENSPPAG00000024919	-	99	83.023	Pan_paniscus
ENSLBEG00000026643	srl	100	79.281	ENSPPRG00000010274	SRL	99	82.791	Panthera_pardus
ENSLBEG00000026643	srl	100	79.281	ENSPTIG00000015162	SRL	99	82.791	Panthera_tigris_altaica
ENSLBEG00000026643	srl	97	81.099	ENSPTRG00000007712	SRL	99	83.023	Pan_troglodytes
ENSLBEG00000026643	srl	97	81.223	ENSPANG00000013804	SRL	98	81.223	Papio_anubis
ENSLBEG00000026643	srl	100	79.193	ENSPKIG00000024974	SRL	94	79.193	Paramormyrops_kingsleyae
ENSLBEG00000026643	srl	100	89.006	ENSPKIG00000006405	srl	100	89.006	Paramormyrops_kingsleyae
ENSLBEG00000026643	srl	96	82.222	ENSPSIG00000008586	SRL	50	82.222	Pelodiscus_sinensis
ENSLBEG00000026643	srl	94	75.621	ENSPMGG00000023505	-	100	75.621	Periophthalmus_magnuspinnatus
ENSLBEG00000026643	srl	97	92.358	ENSPMGG00000021081	srl	99	92.358	Periophthalmus_magnuspinnatus
ENSLBEG00000026643	srl	96	81.978	ENSPEMG00000015842	Srl	100	80.932	Peromyscus_maniculatus_bairdii
ENSLBEG00000026643	srl	89	68.421	ENSPMAG00000004786	srl	99	68.421	Petromyzon_marinus
ENSLBEG00000026643	srl	96	82.667	ENSPCIG00000012128	SRL	98	82.667	Phascolarctos_cinereus
ENSLBEG00000026643	srl	100	93.789	ENSPFOG00000011408	srl	97	92.827	Poecilia_formosa
ENSLBEG00000026643	srl	97	74.145	ENSPLAG00000002932	SRL	99	76.854	Poecilia_latipinna
ENSLBEG00000026643	srl	98	93.275	ENSPLAG00000008017	srl	100	93.275	Poecilia_latipinna
ENSLBEG00000026643	srl	97	74.359	ENSPMEG00000005890	SRL	61	73.932	Poecilia_mexicana
ENSLBEG00000026643	srl	100	94.268	ENSPMEG00000006745	srl	100	93.275	Poecilia_mexicana
ENSLBEG00000026643	srl	97	75.427	ENSPREG00000000315	SRL	100	77.283	Poecilia_reticulata
ENSLBEG00000026643	srl	100	94.268	ENSPREG00000007751	srl	98	96.171	Poecilia_reticulata
ENSLBEG00000026643	srl	89	84.248	ENSPPYG00000007053	SRL	98	84.248	Pongo_abelii
ENSLBEG00000026643	srl	96	82.040	ENSPCAG00000003378	-	51	82.040	Procavia_capensis
ENSLBEG00000026643	srl	96	82.522	ENSPCOG00000023135	SRL	99	83.721	Propithecus_coquereli
ENSLBEG00000026643	srl	96	82.080	ENSPVAG00000006586	SRL	56	82.080	Pteropus_vampyrus
ENSLBEG00000026643	srl	100	95.754	ENSPNYG00000001200	srl	100	95.754	Pundamilia_nyererei
ENSLBEG00000026643	srl	97	73.718	ENSPNYG00000003423	SRL	58	73.718	Pundamilia_nyererei
ENSLBEG00000026643	srl	100	90.658	ENSPNAG00000023106	srl	100	90.658	Pygocentrus_nattereri
ENSLBEG00000026643	srl	94	75.737	ENSPNAG00000007361	-	91	75.737	Pygocentrus_nattereri
ENSLBEG00000026643	srl	96	82.743	ENSRNOG00000005269	Srl	50	82.743	Rattus_norvegicus
ENSLBEG00000026643	srl	97	80.786	ENSRBIG00000042358	SRL	51	80.786	Rhinopithecus_bieti
ENSLBEG00000026643	srl	94	82.805	ENSSBOG00000029273	SRL	100	79.915	Saimiri_boliviensis_boliviensis
ENSLBEG00000026643	srl	97	82.198	ENSSHAG00000011715	-	51	82.198	Sarcophilus_harrisii
ENSLBEG00000026643	srl	94	77.928	ENSSFOG00015021327	SRL	51	76.872	Scleropages_formosus
ENSLBEG00000026643	srl	100	89.256	ENSSFOG00015009773	srl	100	89.256	Scleropages_formosus
ENSLBEG00000026643	srl	95	74.348	ENSSMAG00000002232	SRL	50	74.348	Scophthalmus_maximus
ENSLBEG00000026643	srl	100	94.692	ENSSMAG00000016274	srl	100	94.692	Scophthalmus_maximus
ENSLBEG00000026643	srl	95	77.042	ENSSDUG00000009161	SRL	99	77.042	Seriola_dumerili
ENSLBEG00000026643	srl	94	97.523	ENSSDUG00000010808	srl	98	97.523	Seriola_dumerili
ENSLBEG00000026643	srl	100	96.178	ENSSLDG00000022024	srl	100	96.178	Seriola_lalandi_dorsalis
ENSLBEG00000026643	srl	94	77.074	ENSSLDG00000014601	SRL	100	77.632	Seriola_lalandi_dorsalis
ENSLBEG00000026643	srl	96	82.080	ENSSPUG00000016859	SRL	99	82.080	Sphenodon_punctatus
ENSLBEG00000026643	srl	94	78.912	ENSSPAG00000014254	SRL	98	78.912	Stegastes_partitus
ENSLBEG00000026643	srl	100	95.763	ENSSPAG00000019105	srl	100	95.763	Stegastes_partitus
ENSLBEG00000026643	srl	96	81.360	ENSSSCG00000007949	SRL	98	82.993	Sus_scrofa
ENSLBEG00000026643	srl	77	85.635	ENSTGUG00000016121	-	100	85.635	Taeniopygia_guttata
ENSLBEG00000026643	srl	96	81.556	ENSTGUG00000003951	-	99	81.556	Taeniopygia_guttata
ENSLBEG00000026643	srl	89	78.520	ENSTRUG00000013310	SRL	55	78.333	Takifugu_rubripes
ENSLBEG00000026643	srl	100	95.329	ENSTRUG00000006005	srl	100	95.329	Takifugu_rubripes
ENSLBEG00000026643	srl	97	95.165	ENSTNIG00000009739	srl	100	94.480	Tetraodon_nigroviridis
ENSLBEG00000026643	srl	96	81.416	ENSUAMG00000005701	SRL	56	81.416	Ursus_americanus
ENSLBEG00000026643	srl	96	81.416	ENSUMAG00000002574	SRL	56	81.416	Ursus_maritimus
ENSLBEG00000026643	srl	97	80.744	ENSVVUG00000016331	-	50	80.744	Vulpes_vulpes
ENSLBEG00000026643	srl	99	79.104	ENSXETG00000017313	srl	99	81.737	Xenopus_tropicalis
ENSLBEG00000026643	srl	89	95.487	ENSXCOG00000010424	srl	97	95.487	Xiphophorus_couchianus
ENSLBEG00000026643	srl	96	77.333	ENSXCOG00000014584	SRL	99	77.333	Xiphophorus_couchianus
ENSLBEG00000026643	srl	97	74.573	ENSXMAG00000027598	SRL	64	74.573	Xiphophorus_maculatus
ENSLBEG00000026643	srl	100	94.055	ENSXMAG00000004625	srl	95	94.055	Xiphophorus_maculatus