EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000026722 (Gene tree)
Gene ID: 109988562
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 8718 bases
Position: chrFKLU01000006.1:1580852-1589569
Accession: 109988562
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000035624	TruB_N	PF01509.18	4.4e-46	1	1
ENSLBEP00000035633	TruB_N	PF01509.18	2.6e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000037136	-	762	-	ENSLBEP00000035633	253 (aa)	-	-
ENSLBET00000037127	-	5423	XM_020640086	ENSLBEP00000035624	286 (aa)	XP_020495742	UPI0009B2E7D0

Gene Model

Click here to download ENSLBEG00000026722's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000026722's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000026722	trub1	92	64.906	ENSG00000165832	TRUB1	76	64.906	Homo_sapiens
ENSLBEG00000026722	trub1	92	87.786	ENSAPOG00000020565	trub1	96	87.547	Acanthochromis_polyacanthus
ENSLBEG00000026722	trub1	92	64.179	ENSAMEG00000014931	TRUB1	76	64.179	Ailuropoda_melanoleuca
ENSLBEG00000026722	trub1	96	84.774	ENSACIG00000003060	trub1	91	84.774	Amphilophus_citrinellus
ENSLBEG00000026722	trub1	92	88.168	ENSAOCG00000017188	trub1	96	87.925	Amphiprion_ocellaris
ENSLBEG00000026722	trub1	92	88.931	ENSAPEG00000015209	trub1	96	88.679	Amphiprion_percula
ENSLBEG00000026722	trub1	86	87.755	ENSATEG00000023291	trub1	88	87.755	Anabas_testudineus
ENSLBEG00000026722	trub1	91	65.900	ENSAPLG00000006808	TRUB1	94	65.900	Anas_platyrhynchos
ENSLBEG00000026722	trub1	86	66.122	ENSACAG00000009282	TRUB1	88	66.122	Anolis_carolinensis
ENSLBEG00000026722	trub1	92	63.910	ENSANAG00000022870	TRUB1	70	67.886	Aotus_nancymaae
ENSLBEG00000026722	trub1	95	84.615	ENSACLG00000000823	trub1	98	84.615	Astatotilapia_calliptera
ENSLBEG00000026722	trub1	92	74.242	ENSAMXG00000015845	trub1	88	74.242	Astyanax_mexicanus
ENSLBEG00000026722	trub1	92	65.414	ENSBTAG00000012955	TRUB1	76	65.414	Bos_taurus
ENSLBEG00000026722	trub1	92	63.910	ENSCJAG00000047815	TRUB1	70	67.886	Callithrix_jacchus
ENSLBEG00000026722	trub1	92	64.662	ENSCAFG00000011688	TRUB1	76	64.662	Canis_familiaris
ENSLBEG00000026722	trub1	92	64.662	ENSCAFG00020013237	TRUB1	76	64.662	Canis_lupus_dingo
ENSLBEG00000026722	trub1	92	64.662	ENSCHIG00000020884	TRUB1	80	64.662	Capra_hircus
ENSLBEG00000026722	trub1	92	63.158	ENSTSYG00000000446	TRUB1	76	63.158	Carlito_syrichta
ENSLBEG00000026722	trub1	80	56.466	ENSCAPG00000017088	TRUB1	91	56.466	Cavia_aperea
ENSLBEG00000026722	trub1	68	64.103	ENSCPOG00000030129	-	75	64.103	Cavia_porcellus
ENSLBEG00000026722	trub1	67	65.104	ENSCPOG00000040236	-	77	65.104	Cavia_porcellus
ENSLBEG00000026722	trub1	92	63.910	ENSCCAG00000028842	TRUB1	70	67.886	Cebus_capucinus
ENSLBEG00000026722	trub1	86	68.293	ENSCATG00000033431	TRUB1	70	68.293	Cercocebus_atys
ENSLBEG00000026722	trub1	64	65.574	ENSCLAG00000008664	TRUB1	75	65.574	Chinchilla_lanigera
ENSLBEG00000026722	trub1	92	64.286	ENSCSAG00000004891	TRUB1	70	68.293	Chlorocebus_sabaeus
ENSLBEG00000026722	trub1	85	60.494	ENSCHOG00000011931	TRUB1	70	60.494	Choloepus_hoffmanni
ENSLBEG00000026722	trub1	96	65.328	ENSCPBG00000003051	TRUB1	94	65.328	Chrysemys_picta_bellii
ENSLBEG00000026722	trub1	92	64.286	ENSCANG00000029445	TRUB1	70	68.293	Colobus_angolensis_palliatus
ENSLBEG00000026722	trub1	90	56.977	ENSCGRG00001010322	-	69	56.226	Cricetulus_griseus_chok1gshd
ENSLBEG00000026722	trub1	81	63.793	ENSCGRG00001016772	-	75	63.675	Cricetulus_griseus_chok1gshd
ENSLBEG00000026722	trub1	90	64.341	ENSCGRG00000010806	Trub1	79	63.774	Cricetulus_griseus_crigri
ENSLBEG00000026722	trub1	91	79.693	ENSCSEG00000011261	trub1	89	76.812	Cynoglossus_semilaevis
ENSLBEG00000026722	trub1	89	80.784	ENSCVAG00000008791	trub1	78	80.784	Cyprinodon_variegatus
ENSLBEG00000026722	trub1	91	73.077	ENSDARG00000053805	trub1	99	85.294	Danio_rerio
ENSLBEG00000026722	trub1	86	65.854	ENSDNOG00000001069	TRUB1	70	65.854	Dasypus_novemcinctus
ENSLBEG00000026722	trub1	84	67.782	ENSDORG00000010431	Trub1	71	67.073	Dipodomys_ordii
ENSLBEG00000026722	trub1	70	65.248	ENSETEG00000009183	TRUB1	65	59.036	Echinops_telfairi
ENSLBEG00000026722	trub1	92	63.910	ENSEASG00005014739	TRUB1	76	63.910	Equus_asinus_asinus
ENSLBEG00000026722	trub1	92	63.910	ENSECAG00000007177	TRUB1	76	63.910	Equus_caballus
ENSLBEG00000026722	trub1	92	57.143	ENSEEUG00000013993	TRUB1	74	57.143	Erinaceus_europaeus
ENSLBEG00000026722	trub1	94	78.309	ENSELUG00000000502	trub1	95	78.309	Esox_lucius
ENSLBEG00000026722	trub1	92	64.662	ENSFCAG00000031927	TRUB1	76	64.662	Felis_catus
ENSLBEG00000026722	trub1	81	64.224	ENSFALG00000002232	TRUB1	91	63.445	Ficedula_albicollis
ENSLBEG00000026722	trub1	64	67.213	ENSFDAG00000008140	TRUB1	75	67.213	Fukomys_damarensis
ENSLBEG00000026722	trub1	99	77.817	ENSFHEG00000004016	trub1	98	77.817	Fundulus_heteroclitus
ENSLBEG00000026722	trub1	91	65.000	ENSGALG00000009091	TRUB1	92	65.000	Gallus_gallus
ENSLBEG00000026722	trub1	89	80.859	ENSGAFG00000009193	trub1	89	80.078	Gambusia_affinis
ENSLBEG00000026722	trub1	69	90.230	ENSGACG00000015387	trub1	96	89.796	Gasterosteus_aculeatus
ENSLBEG00000026722	trub1	95	65.568	ENSGAGG00000009758	TRUB1	78	65.568	Gopherus_agassizii
ENSLBEG00000026722	trub1	92	64.906	ENSGGOG00000004583	TRUB1	76	64.906	Gorilla_gorilla
ENSLBEG00000026722	trub1	95	84.249	ENSHBUG00000016787	trub1	98	84.249	Haplochromis_burtoni
ENSLBEG00000026722	trub1	86	66.667	ENSHGLG00000015314	TRUB1	70	66.667	Heterocephalus_glaber_female
ENSLBEG00000026722	trub1	64	66.667	ENSHGLG00100009183	TRUB1	77	66.667	Heterocephalus_glaber_male
ENSLBEG00000026722	trub1	93	84.906	ENSHCOG00000017877	trub1	95	84.906	Hippocampus_comes
ENSLBEG00000026722	trub1	94	74.074	ENSIPUG00000017559	trub1	95	74.074	Ictalurus_punctatus
ENSLBEG00000026722	trub1	92	64.259	ENSSTOG00000003641	TRUB1	87	60.627	Ictidomys_tridecemlineatus
ENSLBEG00000026722	trub1	93	64.151	ENSJJAG00000011800	Trub1	76	64.151	Jaculus_jaculus
ENSLBEG00000026722	trub1	97	81.588	ENSKMAG00000006232	trub1	95	84.151	Kryptolebias_marmoratus
ENSLBEG00000026722	trub1	91	70.270	ENSLACG00000014885	TRUB1	86	70.270	Latimeria_chalumnae
ENSLBEG00000026722	trub1	99	68.750	ENSLOCG00000012979	trub1	97	68.750	Lepisosteus_oculatus
ENSLBEG00000026722	trub1	86	67.886	ENSLAFG00000015452	TRUB1	76	64.794	Loxodonta_africana
ENSLBEG00000026722	trub1	92	64.286	ENSMFAG00000031767	TRUB1	70	68.293	Macaca_fascicularis
ENSLBEG00000026722	trub1	92	64.286	ENSMMUG00000001902	TRUB1	70	68.293	Macaca_mulatta
ENSLBEG00000026722	trub1	92	59.023	ENSMNEG00000044646	TRUB1	69	62.195	Macaca_nemestrina
ENSLBEG00000026722	trub1	92	64.286	ENSMLEG00000042655	TRUB1	70	68.293	Mandrillus_leucophaeus
ENSLBEG00000026722	trub1	95	84.615	ENSMZEG00005024095	trub1	98	84.615	Maylandia_zebra
ENSLBEG00000026722	trub1	91	65.385	ENSMGAG00000011135	TRUB1	89	65.385	Meleagris_gallopavo
ENSLBEG00000026722	trub1	90	62.403	ENSMAUG00000011101	Trub1	76	61.887	Mesocricetus_auratus
ENSLBEG00000026722	trub1	92	63.910	ENSMICG00000016324	TRUB1	76	63.910	Microcebus_murinus
ENSLBEG00000026722	trub1	89	64.479	ENSMOCG00000017759	Trub1	80	63.910	Microtus_ochrogaster
ENSLBEG00000026722	trub1	85	68.852	ENSMODG00000009676	TRUB1	71	65.759	Monodelphis_domestica
ENSLBEG00000026722	trub1	85	66.529	MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	Mus_caroli
ENSLBEG00000026722	trub1	85	65.702	ENSMUSG00000025086	Trub1	76	66.310	Mus_musculus
ENSLBEG00000026722	trub1	86	65.447	MGP_PahariEiJ_G0014588	Trub1	73	65.447	Mus_pahari
ENSLBEG00000026722	trub1	85	66.116	MGP_SPRETEiJ_G0024021	Trub1	76	66.845	Mus_spretus
ENSLBEG00000026722	trub1	92	64.286	ENSMPUG00000003556	TRUB1	76	64.286	Mustela_putorius_furo
ENSLBEG00000026722	trub1	94	62.963	ENSMLUG00000017686	TRUB1	76	64.151	Myotis_lucifugus
ENSLBEG00000026722	trub1	92	64.286	ENSNGAG00000018682	Trub1	76	64.286	Nannospalax_galili
ENSLBEG00000026722	trub1	88	89.328	ENSNBRG00000023393	trub1	90	89.328	Neolamprologus_brichardi
ENSLBEG00000026722	trub1	92	64.906	ENSNLEG00000016345	TRUB1	76	64.906	Nomascus_leucogenys
ENSLBEG00000026722	trub1	70	71.144	ENSMEUG00000006603	TRUB1	75	70.792	Notamacropus_eugenii
ENSLBEG00000026722	trub1	93	65.283	ENSOPRG00000009371	TRUB1	75	65.283	Ochotona_princeps
ENSLBEG00000026722	trub1	92	62.030	ENSODEG00000010854	TRUB1	76	62.030	Octodon_degus
ENSLBEG00000026722	trub1	95	84.615	ENSONIG00000007249	trub1	99	84.615	Oreochromis_niloticus
ENSLBEG00000026722	trub1	86	68.016	ENSOANG00000001556	TRUB1	84	66.535	Ornithorhynchus_anatinus
ENSLBEG00000026722	trub1	92	63.534	ENSOCUG00000009456	TRUB1	77	63.534	Oryctolagus_cuniculus
ENSLBEG00000026722	trub1	98	78.648	ENSORLG00000029719	trub1	99	78.648	Oryzias_latipes
ENSLBEG00000026722	trub1	98	78.648	ENSORLG00020016767	trub1	98	78.648	Oryzias_latipes_hni
ENSLBEG00000026722	trub1	95	79.705	ENSORLG00015014728	trub1	99	77.580	Oryzias_latipes_hsok
ENSLBEG00000026722	trub1	98	76.512	ENSOMEG00000014556	trub1	98	76.512	Oryzias_melastigma
ENSLBEG00000026722	trub1	92	64.286	ENSOGAG00000015895	TRUB1	76	64.286	Otolemur_garnettii
ENSLBEG00000026722	trub1	92	63.370	ENSOARG00000015591	TRUB1	78	63.370	Ovis_aries
ENSLBEG00000026722	trub1	92	64.906	ENSPPAG00000043645	TRUB1	76	64.906	Pan_paniscus
ENSLBEG00000026722	trub1	92	64.286	ENSPPRG00000007096	TRUB1	76	64.286	Panthera_pardus
ENSLBEG00000026722	trub1	92	64.286	ENSPTIG00000006378	TRUB1	76	64.286	Panthera_tigris_altaica
ENSLBEG00000026722	trub1	92	64.906	ENSPTRG00000002964	TRUB1	76	64.906	Pan_troglodytes
ENSLBEG00000026722	trub1	92	64.286	ENSPANG00000020712	TRUB1	70	68.293	Papio_anubis
ENSLBEG00000026722	trub1	77	68.137	ENSPKIG00000003852	trub1	88	68.137	Paramormyrops_kingsleyae
ENSLBEG00000026722	trub1	91	67.181	ENSPSIG00000012877	TRUB1	87	67.181	Pelodiscus_sinensis
ENSLBEG00000026722	trub1	91	77.778	ENSPMGG00000000075	trub1	92	77.778	Periophthalmus_magnuspinnatus
ENSLBEG00000026722	trub1	93	65.283	ENSPEMG00000011156	Trub1	76	65.283	Peromyscus_maniculatus_bairdii
ENSLBEG00000026722	trub1	85	68.852	ENSPCIG00000009729	TRUB1	69	66.154	Phascolarctos_cinereus
ENSLBEG00000026722	trub1	94	79.851	ENSPFOG00000009950	trub1	98	79.851	Poecilia_formosa
ENSLBEG00000026722	trub1	95	79.779	ENSPLAG00000013855	trub1	95	79.779	Poecilia_latipinna
ENSLBEG00000026722	trub1	95	80.147	ENSPMEG00000009064	trub1	98	80.147	Poecilia_mexicana
ENSLBEG00000026722	trub1	95	79.779	ENSPREG00000003343	trub1	98	79.779	Poecilia_reticulata
ENSLBEG00000026722	trub1	92	64.528	ENSPPYG00000002676	TRUB1	76	64.528	Pongo_abelii
ENSLBEG00000026722	trub1	94	59.108	ENSPCAG00000008427	TRUB1	74	59.328	Procavia_capensis
ENSLBEG00000026722	trub1	92	59.023	ENSPCOG00000024360	TRUB1	75	58.271	Propithecus_coquereli
ENSLBEG00000026722	trub1	71	69.802	ENSPVAG00000007575	TRUB1	77	69.802	Pteropus_vampyrus
ENSLBEG00000026722	trub1	95	84.249	ENSPNYG00000018614	trub1	98	84.249	Pundamilia_nyererei
ENSLBEG00000026722	trub1	96	72.951	ENSPNAG00000006881	trub1	90	72.951	Pygocentrus_nattereri
ENSLBEG00000026722	trub1	92	62.030	ENSRNOG00000017321	Trub1	78	62.030	Rattus_norvegicus
ENSLBEG00000026722	trub1	92	56.343	ENSRBIG00000033423	TRUB1	68	59.677	Rhinopithecus_bieti
ENSLBEG00000026722	trub1	92	64.286	ENSRROG00000033902	TRUB1	70	68.293	Rhinopithecus_roxellana
ENSLBEG00000026722	trub1	92	63.910	ENSSBOG00000024237	TRUB1	70	67.886	Saimiri_boliviensis_boliviensis
ENSLBEG00000026722	trub1	74	68.372	ENSSHAG00000009346	TRUB1	72	68.372	Sarcophilus_harrisii
ENSLBEG00000026722	trub1	93	74.539	ENSSFOG00015022124	trub1	92	74.539	Scleropages_formosus
ENSLBEG00000026722	trub1	96	87.681	ENSSMAG00000001020	trub1	98	87.681	Scophthalmus_maximus
ENSLBEG00000026722	trub1	97	85.199	ENSSDUG00000016414	trub1	99	85.199	Seriola_dumerili
ENSLBEG00000026722	trub1	97	85.199	ENSSLDG00000015486	trub1	99	85.199	Seriola_lalandi_dorsalis
ENSLBEG00000026722	trub1	91	66.920	ENSSPUG00000001642	TRUB1	90	66.920	Sphenodon_punctatus
ENSLBEG00000026722	trub1	97	85.921	ENSSPAG00000001217	trub1	99	85.921	Stegastes_partitus
ENSLBEG00000026722	trub1	92	63.910	ENSSSCG00000010653	TRUB1	78	63.910	Sus_scrofa
ENSLBEG00000026722	trub1	91	64.751	ENSTGUG00000010971	TRUB1	97	62.319	Taeniopygia_guttata
ENSLBEG00000026722	trub1	80	54.741	ENSTBEG00000002880	TRUB1	91	54.741	Tupaia_belangeri
ENSLBEG00000026722	trub1	71	69.307	ENSTTRG00000005767	TRUB1	77	69.307	Tursiops_truncatus
ENSLBEG00000026722	trub1	92	64.662	ENSUAMG00000024876	TRUB1	76	64.662	Ursus_americanus
ENSLBEG00000026722	trub1	92	64.662	ENSUMAG00000002411	TRUB1	79	64.662	Ursus_maritimus
ENSLBEG00000026722	trub1	94	64.684	ENSVPAG00000005507	TRUB1	76	64.684	Vicugna_pacos
ENSLBEG00000026722	trub1	92	64.662	ENSVVUG00000010085	TRUB1	64	64.662	Vulpes_vulpes
ENSLBEG00000026722	trub1	91	65.019	ENSXETG00000023828	trub1	95	65.019	Xenopus_tropicalis
ENSLBEG00000026722	trub1	86	82.996	ENSXCOG00000017847	trub1	87	82.996	Xiphophorus_couchianus
ENSLBEG00000026722	trub1	95	80.147	ENSXMAG00000014701	trub1	98	80.147	Xiphophorus_maculatus