EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000027848 (Gene tree)
Gene ID: 110000154
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 15826 bases
Position: chrFKLU01000014.1:2119489-2135314
Accession: 110000154
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000037352	UPF1_Zn_bind	PF09416.10	2.8e-74	1	1
ENSLBEP00000037352	ResIII	PF04851.15	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000038898	-	4851	XM_020655343	ENSLBEP00000037352	1102 (aa)	XP_020510999	UPI0009B3D4FB

Gene Model

Click here to download ENSLBEG00000027848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000027848's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000027848	-	100	90.779	ENSLBEG00000014862	upf1	100	92.301

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000027848	-	100	92.246	ENSG00000005007	UPF1	100	92.246	Homo_sapiens
ENSLBEG00000027848	-	100	98.639	ENSAPOG00000010916	-	100	98.639	Acanthochromis_polyacanthus
ENSLBEG00000027848	-	100	93.044	ENSAPOG00000023773	upf1	100	93.044	Acanthochromis_polyacanthus
ENSLBEG00000027848	-	100	91.925	ENSAMEG00000011474	UPF1	100	91.925	Ailuropoda_melanoleuca
ENSLBEG00000027848	-	100	93.013	ENSACIG00000019949	upf1	100	93.013	Amphilophus_citrinellus
ENSLBEG00000027848	-	93	98.152	ENSACIG00000010985	-	100	98.152	Amphilophus_citrinellus
ENSLBEG00000027848	-	100	92.559	ENSAOCG00000018519	upf1	100	93.017	Amphiprion_ocellaris
ENSLBEG00000027848	-	100	98.639	ENSAOCG00000006352	-	100	98.639	Amphiprion_ocellaris
ENSLBEG00000027848	-	100	98.548	ENSAPEG00000006292	-	100	98.548	Amphiprion_percula
ENSLBEG00000027848	-	100	92.559	ENSAPEG00000016344	upf1	100	93.017	Amphiprion_percula
ENSLBEG00000027848	-	100	98.548	ENSATEG00000016606	-	100	98.548	Anabas_testudineus
ENSLBEG00000027848	-	100	91.510	ENSATEG00000017867	upf1	100	92.225	Anabas_testudineus
ENSLBEG00000027848	-	95	93.939	ENSAPLG00000009175	UPF1	100	93.845	Anas_platyrhynchos
ENSLBEG00000027848	-	95	92.403	ENSANAG00000024107	UPF1	95	92.308	Aotus_nancymaae
ENSLBEG00000027848	-	100	92.922	ENSACLG00000007181	upf1	100	92.922	Astatotilapia_calliptera
ENSLBEG00000027848	-	100	98.094	ENSACLG00000022630	-	100	98.094	Astatotilapia_calliptera
ENSLBEG00000027848	-	100	94.742	ENSAMXG00000042187	upf1	100	94.923	Astyanax_mexicanus
ENSLBEG00000027848	-	100	91.940	ENSBTAG00000020922	UPF1	100	91.940	Bos_taurus
ENSLBEG00000027848	-	97	49.176	WBGene00004880	smg-2	99	49.084	Caenorhabditis_elegans
ENSLBEG00000027848	-	100	91.519	ENSCJAG00000019627	UPF1	100	91.519	Callithrix_jacchus
ENSLBEG00000027848	-	100	91.696	ENSCAFG00000014578	UPF1	100	91.696	Canis_familiaris
ENSLBEG00000027848	-	100	92.424	ENSCAFG00020012347	UPF1	100	92.424	Canis_lupus_dingo
ENSLBEG00000027848	-	100	92.672	ENSCHIG00000011018	UPF1	100	92.672	Capra_hircus
ENSLBEG00000027848	-	95	93.542	ENSTSYG00000008877	UPF1	98	93.447	Carlito_syrichta
ENSLBEG00000027848	-	96	92.676	ENSCAPG00000005758	UPF1	96	92.582	Cavia_aperea
ENSLBEG00000027848	-	100	92.633	ENSCPOG00000025463	UPF1	100	92.543	Cavia_porcellus
ENSLBEG00000027848	-	100	92.246	ENSCCAG00000032175	UPF1	100	92.246	Cebus_capucinus
ENSLBEG00000027848	-	94	93.989	ENSCATG00000040306	UPF1	97	93.893	Cercocebus_atys
ENSLBEG00000027848	-	95	93.732	ENSCLAG00000004037	UPF1	99	93.637	Chinchilla_lanigera
ENSLBEG00000027848	-	100	92.246	ENSCSAG00000005276	UPF1	100	92.246	Chlorocebus_sabaeus
ENSLBEG00000027848	-	100	92.652	ENSCPBG00000012513	UPF1	100	92.742	Chrysemys_picta_bellii
ENSLBEG00000027848	-	77	79.298	ENSCING00000021399	-	99	79.138	Ciona_intestinalis
ENSLBEG00000027848	-	99	72.980	ENSCSAVG00000006533	-	99	73.232	Ciona_savignyi
ENSLBEG00000027848	-	95	93.732	ENSCANG00000029819	UPF1	97	93.637	Colobus_angolensis_palliatus
ENSLBEG00000027848	-	100	92.211	ENSCGRG00001021067	Upf1	100	92.211	Cricetulus_griseus_chok1gshd
ENSLBEG00000027848	-	95	93.257	ENSCGRG00000013480	Upf1	99	92.568	Cricetulus_griseus_crigri
ENSLBEG00000027848	-	100	87.862	ENSCSEG00000017239	upf1	100	87.703	Cynoglossus_semilaevis
ENSLBEG00000027848	-	100	97.731	ENSCSEG00000016159	-	100	97.731	Cynoglossus_semilaevis
ENSLBEG00000027848	-	100	97.550	ENSCVAG00000010561	upf1	100	97.550	Cyprinodon_variegatus
ENSLBEG00000027848	-	100	94.107	ENSDARG00000016302	upf1	100	93.496	Danio_rerio
ENSLBEG00000027848	-	95	91.263	ENSDORG00000009984	Upf1	95	91.168	Dipodomys_ordii
ENSLBEG00000027848	-	86	71.144	FBgn0030354	Upf1	81	70.704	Drosophila_melanogaster
ENSLBEG00000027848	-	54	86.139	ENSEBUG00000010069	upf1	96	86.469	Eptatretus_burgeri
ENSLBEG00000027848	-	100	92.583	ENSEASG00005006549	UPF1	100	92.583	Equus_asinus_asinus
ENSLBEG00000027848	-	100	92.583	ENSECAG00000010639	UPF1	100	92.583	Equus_caballus
ENSLBEG00000027848	-	100	92.690	ENSELUG00000020917	upf1	100	92.870	Esox_lucius
ENSLBEG00000027848	-	100	94.950	ENSELUG00000012916	-	100	94.950	Esox_lucius
ENSLBEG00000027848	-	100	91.608	ENSFCAG00000009757	UPF1	100	91.608	Felis_catus
ENSLBEG00000027848	-	96	93.667	ENSFALG00000009312	UPF1	97	93.573	Ficedula_albicollis
ENSLBEG00000027848	-	95	93.637	ENSFDAG00000014816	UPF1	99	93.542	Fukomys_damarensis
ENSLBEG00000027848	-	100	89.535	ENSFHEG00000006428	upf1	100	88.998	Fundulus_heteroclitus
ENSLBEG00000027848	-	86	98.367	ENSFHEG00000016276	-	96	98.367	Fundulus_heteroclitus
ENSLBEG00000027848	-	100	94.609	ENSGMOG00000007541	upf1	100	94.609	Gadus_morhua
ENSLBEG00000027848	-	100	92.411	ENSGALG00000003220	UPF1	100	92.589	Gallus_gallus
ENSLBEG00000027848	-	100	97.459	ENSGAFG00000004831	upf1	100	97.459	Gambusia_affinis
ENSLBEG00000027848	-	64	92.567	ENSGAFG00000015443	-	88	92.061	Gambusia_affinis
ENSLBEG00000027848	-	100	92.979	ENSGAGG00000022217	UPF1	100	93.159	Gopherus_agassizii
ENSLBEG00000027848	-	95	94.535	ENSGGOG00000002608	UPF1	99	94.439	Gorilla_gorilla
ENSLBEG00000027848	-	89	89.157	ENSHBUG00000014694	upf1	100	89.157	Haplochromis_burtoni
ENSLBEG00000027848	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSLBEG00000027848	-	100	91.254	ENSHGLG00000010900	UPF1	100	91.254	Heterocephalus_glaber_female
ENSLBEG00000027848	-	95	91.928	ENSHGLG00100005904	UPF1	96	91.833	Heterocephalus_glaber_male
ENSLBEG00000027848	-	100	97.461	ENSHCOG00000008918	upf1	100	97.461	Hippocampus_comes
ENSLBEG00000027848	-	100	94.832	ENSIPUG00000005108	UPF1	100	95.014	Ictalurus_punctatus
ENSLBEG00000027848	-	100	92.246	ENSSTOG00000009196	UPF1	100	92.246	Ictidomys_tridecemlineatus
ENSLBEG00000027848	-	100	91.378	ENSJJAG00000023151	Upf1	100	91.378	Jaculus_jaculus
ENSLBEG00000027848	-	100	98.004	ENSKMAG00000004962	upf1	100	98.004	Kryptolebias_marmoratus
ENSLBEG00000027848	-	63	94.556	ENSLACG00000008482	UPF1	100	94.556	Latimeria_chalumnae
ENSLBEG00000027848	-	100	95.554	ENSLOCG00000002072	upf1	100	95.554	Lepisosteus_oculatus
ENSLBEG00000027848	-	100	91.416	ENSLAFG00000014963	UPF1	100	91.416	Loxodonta_africana
ENSLBEG00000027848	-	100	92.171	ENSMFAG00000037748	UPF1	100	92.171	Macaca_fascicularis
ENSLBEG00000027848	-	100	91.925	ENSMMUG00000023286	UPF1	100	91.925	Macaca_mulatta
ENSLBEG00000027848	-	100	92.171	ENSMNEG00000000046	UPF1	100	92.171	Macaca_nemestrina
ENSLBEG00000027848	-	95	93.732	ENSMLEG00000028404	UPF1	99	93.637	Mandrillus_leucophaeus
ENSLBEG00000027848	-	100	98.276	ENSMAMG00000006231	-	100	98.276	Mastacembelus_armatus
ENSLBEG00000027848	-	100	91.868	ENSMAMG00000006229	upf1	100	92.583	Mastacembelus_armatus
ENSLBEG00000027848	-	100	98.094	ENSMZEG00005016386	-	100	98.094	Maylandia_zebra
ENSLBEG00000027848	-	100	91.921	ENSMZEG00005003489	upf1	100	92.549	Maylandia_zebra
ENSLBEG00000027848	-	95	93.454	ENSMGAG00000004745	UPF1	100	93.359	Meleagris_gallopavo
ENSLBEG00000027848	-	95	93.257	ENSMAUG00000011398	Upf1	95	93.162	Mesocricetus_auratus
ENSLBEG00000027848	-	100	92.157	ENSMICG00000001659	UPF1	100	92.157	Microcebus_murinus
ENSLBEG00000027848	-	100	91.482	ENSMOCG00000005699	Upf1	100	91.571	Microtus_ochrogaster
ENSLBEG00000027848	-	100	92.287	ENSMMOG00000007881	upf1	100	92.663	Mola_mola
ENSLBEG00000027848	-	95	96.367	ENSMMOG00000007537	-	99	96.367	Mola_mola
ENSLBEG00000027848	-	100	91.278	ENSMODG00000003689	UPF1	100	91.366	Monodelphis_domestica
ENSLBEG00000027848	-	100	92.287	ENSMALG00000000144	upf1	100	92.127	Monopterus_albus
ENSLBEG00000027848	-	100	96.655	ENSMALG00000018100	-	100	96.655	Monopterus_albus
ENSLBEG00000027848	-	100	92.122	MGP_CAROLIEiJ_G0031142	Upf1	100	92.122	Mus_caroli
ENSLBEG00000027848	-	100	92.122	ENSMUSG00000058301	Upf1	100	92.122	Mus_musculus
ENSLBEG00000027848	-	100	92.122	MGP_PahariEiJ_G0021607	Upf1	100	92.122	Mus_pahari
ENSLBEG00000027848	-	100	92.122	MGP_SPRETEiJ_G0032260	Upf1	100	92.122	Mus_spretus
ENSLBEG00000027848	-	100	92.424	ENSMPUG00000015516	UPF1	100	92.424	Mustela_putorius_furo
ENSLBEG00000027848	-	99	92.218	ENSMLUG00000012122	UPF1	99	92.218	Myotis_lucifugus
ENSLBEG00000027848	-	100	91.150	ENSNGAG00000024107	Upf1	100	91.150	Nannospalax_galili
ENSLBEG00000027848	-	100	91.198	ENSNBRG00000000670	upf1	100	91.198	Neolamprologus_brichardi
ENSLBEG00000027848	-	100	94.488	ENSNBRG00000022069	-	100	96.993	Neolamprologus_brichardi
ENSLBEG00000027848	-	95	88.034	ENSNLEG00000006062	UPF1	99	87.939	Nomascus_leucogenys
ENSLBEG00000027848	-	83	88.477	ENSMEUG00000014146	-	83	88.281	Notamacropus_eugenii
ENSLBEG00000027848	-	95	87.440	ENSOPRG00000014018	UPF1	99	87.344	Ochotona_princeps
ENSLBEG00000027848	-	100	92.626	ENSODEG00000012426	UPF1	100	92.536	Octodon_degus
ENSLBEG00000027848	-	100	98.367	ENSONIG00000012729	-	100	98.367	Oreochromis_niloticus
ENSLBEG00000027848	-	100	92.101	ENSONIG00000010452	upf1	100	92.729	Oreochromis_niloticus
ENSLBEG00000027848	-	100	91.270	ENSOANG00000004568	UPF1	100	90.909	Ornithorhynchus_anatinus
ENSLBEG00000027848	-	100	97.641	ENSORLG00000008453	upf1	100	97.641	Oryzias_latipes
ENSLBEG00000027848	-	100	97.552	ENSORLG00020014758	upf1	100	97.552	Oryzias_latipes_hni
ENSLBEG00000027848	-	100	97.552	ENSORLG00015010165	upf1	100	97.552	Oryzias_latipes_hsok
ENSLBEG00000027848	-	100	97.731	ENSOMEG00000003665	upf1	100	97.731	Oryzias_melastigma
ENSLBEG00000027848	-	100	92.335	ENSOGAG00000012866	UPF1	100	92.335	Otolemur_garnettii
ENSLBEG00000027848	-	96	90.901	ENSOARG00000010739	UPF1	100	90.809	Ovis_aries
ENSLBEG00000027848	-	95	93.732	ENSPPAG00000043884	UPF1	96	93.637	Pan_paniscus
ENSLBEG00000027848	-	100	91.608	ENSPPRG00000023470	UPF1	100	91.608	Panthera_pardus
ENSLBEG00000027848	-	95	92.536	ENSPTIG00000010159	UPF1	99	92.440	Panthera_tigris_altaica
ENSLBEG00000027848	-	100	92.171	ENSPTRG00000010721	UPF1	100	92.171	Pan_troglodytes
ENSLBEG00000027848	-	100	92.171	ENSPANG00000008847	UPF1	100	92.171	Papio_anubis
ENSLBEG00000027848	-	91	94.940	ENSPKIG00000006069	upf1	95	95.871	Paramormyrops_kingsleyae
ENSLBEG00000027848	-	70	93.481	ENSPSIG00000009491	UPF1	100	93.351	Pelodiscus_sinensis
ENSLBEG00000027848	-	100	90.958	ENSPMGG00000017327	upf1	100	91.320	Periophthalmus_magnuspinnatus
ENSLBEG00000027848	-	100	91.482	ENSPEMG00000001085	Upf1	100	91.482	Peromyscus_maniculatus_bairdii
ENSLBEG00000027848	-	100	87.658	ENSPMAG00000001206	upf1	100	87.207	Petromyzon_marinus
ENSLBEG00000027848	-	100	92.507	ENSPCIG00000006156	UPF1	100	92.507	Phascolarctos_cinereus
ENSLBEG00000027848	-	100	97.459	ENSPLAG00000016232	-	100	97.459	Poecilia_latipinna
ENSLBEG00000027848	-	100	91.113	ENSPLAG00000018155	-	100	90.664	Poecilia_latipinna
ENSLBEG00000027848	-	100	97.550	ENSPMEG00000016319	-	100	97.550	Poecilia_mexicana
ENSLBEG00000027848	-	100	91.682	ENSPMEG00000011443	-	100	91.379	Poecilia_mexicana
ENSLBEG00000027848	-	100	97.278	ENSPREG00000011247	-	100	97.278	Poecilia_reticulata
ENSLBEG00000027848	-	100	91.308	ENSPREG00000009940	upf1	100	90.950	Poecilia_reticulata
ENSLBEG00000027848	-	100	86.661	ENSPPYG00000009752	UPF1	100	86.484	Pongo_abelii
ENSLBEG00000027848	-	70	98.653	ENSPCAG00000012962	UPF1	69	98.653	Procavia_capensis
ENSLBEG00000027848	-	100	92.096	ENSPCOG00000023813	UPF1	100	92.096	Propithecus_coquereli
ENSLBEG00000027848	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSLBEG00000027848	-	100	91.921	ENSPNYG00000003694	upf1	100	92.549	Pundamilia_nyererei
ENSLBEG00000027848	-	100	98.094	ENSPNYG00000016731	-	100	98.094	Pundamilia_nyererei
ENSLBEG00000027848	-	100	94.288	ENSPNAG00000025614	upf1	100	94.470	Pygocentrus_nattereri
ENSLBEG00000027848	-	100	92.122	ENSRNOG00000020134	Upf1	100	92.122	Rattus_norvegicus
ENSLBEG00000027848	-	95	91.358	ENSRBIG00000013894	UPF1	98	94.432	Rhinopithecus_bieti
ENSLBEG00000027848	-	95	93.732	ENSRROG00000040935	UPF1	98	94.432	Rhinopithecus_roxellana
ENSLBEG00000027848	-	76	55.792	YMR080C	NAM7	87	55.792	Saccharomyces_cerevisiae
ENSLBEG00000027848	-	94	93.989	ENSSBOG00000023632	UPF1	96	93.893	Saimiri_boliviensis_boliviensis
ENSLBEG00000027848	-	95	93.649	ENSSHAG00000010499	UPF1	100	93.555	Sarcophilus_harrisii
ENSLBEG00000027848	-	100	95.554	ENSSFOG00015021095	upf1	100	95.554	Scleropages_formosus
ENSLBEG00000027848	-	100	91.137	ENSSMAG00000005055	upf1	100	91.853	Scophthalmus_maximus
ENSLBEG00000027848	-	100	98.639	ENSSMAG00000021018	-	100	98.639	Scophthalmus_maximus
ENSLBEG00000027848	-	100	91.778	ENSSDUG00000013320	upf1	100	92.493	Seriola_dumerili
ENSLBEG00000027848	-	100	98.911	ENSSDUG00000009629	-	100	98.911	Seriola_dumerili
ENSLBEG00000027848	-	100	98.911	ENSSLDG00000006878	-	100	98.911	Seriola_lalandi_dorsalis
ENSLBEG00000027848	-	100	92.606	ENSSLDG00000020868	upf1	100	92.967	Seriola_lalandi_dorsalis
ENSLBEG00000027848	-	100	92.812	ENSSPUG00000010538	UPF1	100	92.992	Sphenodon_punctatus
ENSLBEG00000027848	-	100	98.367	ENSSPAG00000011521	-	100	98.367	Stegastes_partitus
ENSLBEG00000027848	-	100	90.769	ENSSPAG00000000003	upf1	100	90.000	Stegastes_partitus
ENSLBEG00000027848	-	100	92.761	ENSSSCG00000039301	UPF1	99	94.641	Sus_scrofa
ENSLBEG00000027848	-	82	86.809	ENSTGUG00000001057	UPF1	100	91.568	Taeniopygia_guttata
ENSLBEG00000027848	-	100	97.187	ENSTRUG00000005131	-	100	97.187	Takifugu_rubripes
ENSLBEG00000027848	-	100	92.294	ENSTRUG00000000150	upf1	100	92.384	Takifugu_rubripes
ENSLBEG00000027848	-	100	88.919	ENSTTRG00000011544	UPF1	100	88.829	Tursiops_truncatus
ENSLBEG00000027848	-	100	92.335	ENSUAMG00000007093	UPF1	100	92.335	Ursus_americanus
ENSLBEG00000027848	-	95	94.545	ENSUMAG00000006652	UPF1	99	95.036	Ursus_maritimus
ENSLBEG00000027848	-	100	92.424	ENSVVUG00000007797	UPF1	100	92.424	Vulpes_vulpes
ENSLBEG00000027848	-	100	79.736	ENSXETG00000013602	upf1	100	79.736	Xenopus_tropicalis
ENSLBEG00000027848	-	97	91.174	ENSXCOG00000015275	-	96	91.080	Xiphophorus_couchianus
ENSLBEG00000027848	-	94	97.677	ENSXCOG00000005764	-	100	97.677	Xiphophorus_couchianus
ENSLBEG00000027848	-	100	91.379	ENSXMAG00000001703	-	100	91.289	Xiphophorus_maculatus
ENSLBEG00000027848	-	100	97.550	ENSXMAG00000002540	-	100	97.550	Xiphophorus_maculatus