EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000027930 (Gene tree)
Gene ID: 110000415
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 2798 bases
Position: chrFKLU01000014.1:2145345-2148142
Accession: 110000415
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000037416	LSM	PF01423.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000038967	-	875	XM_020655686	ENSLBEP00000037416	149 (aa)	XP_020511342	UPI0009B3DA6C

Gene Model

Click here to download ENSLBEG00000027930's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000027930's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000027930	lsm4	51	34.177	ENSLBEG00000025781	si:ch73-14h10.2	98	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000027930	lsm4	73	94.545	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSLBEG00000027930	lsm4	100	97.351	ENSAPOG00000005643	lsm4	100	97.351	Acanthochromis_polyacanthus
ENSLBEG00000027930	lsm4	58	98.851	ENSAMEG00000011162	LSM4	67	96.939	Ailuropoda_melanoleuca
ENSLBEG00000027930	lsm4	100	97.315	ENSAOCG00000006414	lsm4	100	97.315	Amphiprion_ocellaris
ENSLBEG00000027930	lsm4	100	97.987	ENSAPEG00000006238	lsm4	100	97.987	Amphiprion_percula
ENSLBEG00000027930	lsm4	100	94.079	ENSATEG00000016559	lsm4	100	94.737	Anabas_testudineus
ENSLBEG00000027930	lsm4	59	98.864	ENSANAG00000034659	LSM4	71	96.970	Aotus_nancymaae
ENSLBEG00000027930	lsm4	100	95.302	ENSACLG00000022738	lsm4	100	95.302	Astatotilapia_calliptera
ENSLBEG00000027930	lsm4	100	86.667	ENSAMXG00000016932	lsm4	100	86.000	Astyanax_mexicanus
ENSLBEG00000027930	lsm4	59	98.864	ENSBTAG00000008578	LSM4	71	96.970	Bos_taurus
ENSLBEG00000027930	lsm4	56	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSLBEG00000027930	lsm4	59	98.864	ENSCJAG00000014171	LSM4	71	96.970	Callithrix_jacchus
ENSLBEG00000027930	lsm4	59	98.864	ENSCAFG00000014900	LSM4	65	96.970	Canis_familiaris
ENSLBEG00000027930	lsm4	59	98.864	ENSCAFG00020012137	LSM4	71	96.970	Canis_lupus_dingo
ENSLBEG00000027930	lsm4	58	98.851	ENSCHIG00000010928	LSM4	65	96.939	Capra_hircus
ENSLBEG00000027930	lsm4	59	97.727	ENSTSYG00000030906	LSM4	71	95.960	Carlito_syrichta
ENSLBEG00000027930	lsm4	59	97.727	ENSCAPG00000014140	LSM4	71	95.960	Cavia_aperea
ENSLBEG00000027930	lsm4	59	97.727	ENSCPOG00000024117	LSM4	71	95.960	Cavia_porcellus
ENSLBEG00000027930	lsm4	59	98.864	ENSCCAG00000036308	LSM4	71	96.970	Cebus_capucinus
ENSLBEG00000027930	lsm4	72	94.495	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSLBEG00000027930	lsm4	59	98.864	ENSCLAG00000010828	LSM4	71	96.970	Chinchilla_lanigera
ENSLBEG00000027930	lsm4	59	98.864	ENSCSAG00000005370	LSM4	71	96.970	Chlorocebus_sabaeus
ENSLBEG00000027930	lsm4	59	100.000	ENSCPBG00000012925	LSM4	72	97.980	Chrysemys_picta_bellii
ENSLBEG00000027930	lsm4	58	93.023	ENSCING00000007519	-	76	87.629	Ciona_intestinalis
ENSLBEG00000027930	lsm4	58	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSLBEG00000027930	lsm4	59	98.864	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSLBEG00000027930	lsm4	59	95.455	ENSCGRG00001014436	Lsm4	71	93.939	Cricetulus_griseus_chok1gshd
ENSLBEG00000027930	lsm4	58	95.402	ENSCGRG00000009398	Lsm4	71	93.878	Cricetulus_griseus_crigri
ENSLBEG00000027930	lsm4	100	88.591	ENSCSEG00000016127	lsm4	100	91.275	Cynoglossus_semilaevis
ENSLBEG00000027930	lsm4	90	89.552	ENSCVAG00000021828	lsm4	98	89.552	Cyprinodon_variegatus
ENSLBEG00000027930	lsm4	100	90.604	ENSCVAG00000010601	lsm4	100	90.604	Cyprinodon_variegatus
ENSLBEG00000027930	lsm4	96	82.000	ENSDARG00000023852	lsm4	99	82.517	Danio_rerio
ENSLBEG00000027930	lsm4	59	97.727	ENSDORG00000024225	Lsm4	71	95.960	Dipodomys_ordii
ENSLBEG00000027930	lsm4	67	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSLBEG00000027930	lsm4	50	93.333	ENSEBUG00000003639	-	64	78.125	Eptatretus_burgeri
ENSLBEG00000027930	lsm4	93	87.770	ENSELUG00000012821	lsm4	74	98.980	Esox_lucius
ENSLBEG00000027930	lsm4	59	98.864	ENSFCAG00000040580	LSM4	71	96.970	Felis_catus
ENSLBEG00000027930	lsm4	58	100.000	ENSFALG00000009478	LSM4	71	97.959	Ficedula_albicollis
ENSLBEG00000027930	lsm4	58	98.851	ENSFDAG00000010124	LSM4	71	96.939	Fukomys_damarensis
ENSLBEG00000027930	lsm4	99	79.739	ENSGMOG00000007729	lsm4	99	79.195	Gadus_morhua
ENSLBEG00000027930	lsm4	59	100.000	ENSGALG00000003385	LSM4	72	97.980	Gallus_gallus
ENSLBEG00000027930	lsm4	100	89.262	ENSGAFG00000004903	lsm4	97	86.567	Gambusia_affinis
ENSLBEG00000027930	lsm4	100	88.742	ENSGACG00000008140	lsm4	100	89.404	Gasterosteus_aculeatus
ENSLBEG00000027930	lsm4	59	100.000	ENSGAGG00000017812	LSM4	72	97.980	Gopherus_agassizii
ENSLBEG00000027930	lsm4	59	98.864	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSLBEG00000027930	lsm4	100	94.631	ENSHBUG00000008858	lsm4	80	94.631	Haplochromis_burtoni
ENSLBEG00000027930	lsm4	59	98.864	ENSHGLG00000006568	LSM4	71	96.970	Heterocephalus_glaber_female
ENSLBEG00000027930	lsm4	62	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSLBEG00000027930	lsm4	100	91.946	ENSHCOG00000008819	lsm4	100	91.946	Hippocampus_comes
ENSLBEG00000027930	lsm4	100	86.667	ENSIPUG00000005368	Lsm4	100	86.000	Ictalurus_punctatus
ENSLBEG00000027930	lsm4	59	98.864	ENSSTOG00000016494	LSM4	71	96.970	Ictidomys_tridecemlineatus
ENSLBEG00000027930	lsm4	59	96.591	ENSJJAG00000017420	Lsm4	71	94.949	Jaculus_jaculus
ENSLBEG00000027930	lsm4	100	91.275	ENSKMAG00000005073	lsm4	100	91.275	Kryptolebias_marmoratus
ENSLBEG00000027930	lsm4	59	100.000	ENSLACG00000015861	LSM4	71	97.980	Latimeria_chalumnae
ENSLBEG00000027930	lsm4	68	97.030	ENSLOCG00000002025	lsm4	100	79.195	Lepisosteus_oculatus
ENSLBEG00000027930	lsm4	58	97.701	ENSLAFG00000017459	LSM4	71	95.918	Loxodonta_africana
ENSLBEG00000027930	lsm4	59	98.864	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSLBEG00000027930	lsm4	59	98.864	ENSMMUG00000004405	LSM4	71	96.970	Macaca_mulatta
ENSLBEG00000027930	lsm4	69	94.231	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSLBEG00000027930	lsm4	72	94.495	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSLBEG00000027930	lsm4	100	92.617	ENSMAMG00000006190	lsm4	100	92.617	Mastacembelus_armatus
ENSLBEG00000027930	lsm4	100	94.631	ENSMZEG00005016420	lsm4	100	94.631	Maylandia_zebra
ENSLBEG00000027930	lsm4	94	79.577	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSLBEG00000027930	lsm4	66	95.960	ENSMICG00000000222	LSM4	71	95.960	Microcebus_murinus
ENSLBEG00000027930	lsm4	59	95.455	ENSMOCG00000020861	Lsm4	71	93.939	Microtus_ochrogaster
ENSLBEG00000027930	lsm4	100	91.946	ENSMALG00000018159	lsm4	100	91.946	Monopterus_albus
ENSLBEG00000027930	lsm4	59	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	Mus_caroli
ENSLBEG00000027930	lsm4	59	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSLBEG00000027930	lsm4	59	95.455	MGP_PahariEiJ_G0021623	Lsm4	71	93.939	Mus_pahari
ENSLBEG00000027930	lsm4	59	95.455	MGP_SPRETEiJ_G0032276	Lsm4	71	93.939	Mus_spretus
ENSLBEG00000027930	lsm4	59	98.864	ENSMPUG00000015589	LSM4	71	96.970	Mustela_putorius_furo
ENSLBEG00000027930	lsm4	58	98.851	ENSMLUG00000004010	LSM4	71	96.939	Myotis_lucifugus
ENSLBEG00000027930	lsm4	59	95.455	ENSNGAG00000008644	Lsm4	71	93.939	Nannospalax_galili
ENSLBEG00000027930	lsm4	72	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSLBEG00000027930	lsm4	52	97.403	ENSOPRG00000005575	LSM4	71	95.238	Ochotona_princeps
ENSLBEG00000027930	lsm4	59	98.864	ENSODEG00000020549	-	71	96.970	Octodon_degus
ENSLBEG00000027930	lsm4	59	88.636	ENSODEG00000004519	-	72	86.869	Octodon_degus
ENSLBEG00000027930	lsm4	97	59.310	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSLBEG00000027930	lsm4	100	95.302	ENSONIG00000012724	lsm4	100	95.302	Oreochromis_niloticus
ENSLBEG00000027930	lsm4	58	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSLBEG00000027930	lsm4	100	90.604	ENSORLG00000008391	lsm4	100	90.604	Oryzias_latipes
ENSLBEG00000027930	lsm4	100	91.275	ENSORLG00020014829	lsm4	100	91.275	Oryzias_latipes_hni
ENSLBEG00000027930	lsm4	100	90.604	ENSORLG00015010205	lsm4	100	90.604	Oryzias_latipes_hsok
ENSLBEG00000027930	lsm4	100	89.262	ENSOMEG00000003606	lsm4	100	89.262	Oryzias_melastigma
ENSLBEG00000027930	lsm4	66	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSLBEG00000027930	lsm4	58	98.851	ENSOARG00000012553	LSM4	68	96.939	Ovis_aries
ENSLBEG00000027930	lsm4	73	94.545	ENSPPAG00000044045	-	71	96.970	Pan_paniscus
ENSLBEG00000027930	lsm4	59	98.864	ENSPPRG00000018264	LSM4	71	96.970	Panthera_pardus
ENSLBEG00000027930	lsm4	58	98.851	ENSPTIG00000006306	LSM4	71	96.939	Panthera_tigris_altaica
ENSLBEG00000027930	lsm4	59	98.864	ENSPTRG00000031470	LSM4	71	96.970	Pan_troglodytes
ENSLBEG00000027930	lsm4	72	94.495	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSLBEG00000027930	lsm4	100	86.000	ENSPKIG00000006154	lsm4	100	86.000	Paramormyrops_kingsleyae
ENSLBEG00000027930	lsm4	58	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSLBEG00000027930	lsm4	59	95.455	ENSPEMG00000001358	Lsm4	71	93.939	Peromyscus_maniculatus_bairdii
ENSLBEG00000027930	lsm4	100	89.262	ENSPFOG00000000570	lsm4	76	89.262	Poecilia_formosa
ENSLBEG00000027930	lsm4	100	89.262	ENSPLAG00000016267	lsm4	100	89.262	Poecilia_latipinna
ENSLBEG00000027930	lsm4	100	89.262	ENSPMEG00000016378	lsm4	100	89.262	Poecilia_mexicana
ENSLBEG00000027930	lsm4	100	89.933	ENSPREG00000011290	lsm4	76	89.933	Poecilia_reticulata
ENSLBEG00000027930	lsm4	59	98.864	ENSPPYG00000009736	LSM4	71	96.970	Pongo_abelii
ENSLBEG00000027930	lsm4	66	95.960	ENSPCOG00000019837	LSM4	71	95.960	Propithecus_coquereli
ENSLBEG00000027930	lsm4	59	98.864	ENSPVAG00000015383	LSM4	71	96.970	Pteropus_vampyrus
ENSLBEG00000027930	lsm4	100	94.631	ENSPNYG00000016794	lsm4	100	94.631	Pundamilia_nyererei
ENSLBEG00000027930	lsm4	95	88.028	ENSPNAG00000016598	lsm4	100	88.028	Pygocentrus_nattereri
ENSLBEG00000027930	lsm4	59	95.455	ENSRNOG00000019572	Lsm4	71	93.939	Rattus_norvegicus
ENSLBEG00000027930	lsm4	69	94.231	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSLBEG00000027930	lsm4	72	94.495	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSLBEG00000027930	lsm4	56	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSLBEG00000027930	lsm4	50	98.649	ENSSBOG00000022455	LSM4	68	96.471	Saimiri_boliviensis_boliviensis
ENSLBEG00000027930	lsm4	59	100.000	ENSSHAG00000011559	LSM4	71	97.980	Sarcophilus_harrisii
ENSLBEG00000027930	lsm4	100	86.000	ENSSFOG00015021067	lsm4	100	86.000	Scleropages_formosus
ENSLBEG00000027930	lsm4	100	85.333	ENSSMAG00000021020	lsm4	100	91.333	Scophthalmus_maximus
ENSLBEG00000027930	lsm4	100	88.623	ENSSDUG00000009588	lsm4	100	88.623	Seriola_dumerili
ENSLBEG00000027930	lsm4	100	88.095	ENSSLDG00000006827	lsm4	100	88.095	Seriola_lalandi_dorsalis
ENSLBEG00000027930	lsm4	58	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSLBEG00000027930	lsm4	100	96.689	ENSSPAG00000011615	lsm4	100	96.689	Stegastes_partitus
ENSLBEG00000027930	lsm4	59	98.864	ENSSSCG00000034314	LSM4	71	96.970	Sus_scrofa
ENSLBEG00000027930	lsm4	100	90.604	ENSTRUG00000021737	lsm4	100	90.604	Takifugu_rubripes
ENSLBEG00000027930	lsm4	100	85.333	ENSTNIG00000010191	lsm4	100	85.333	Tetraodon_nigroviridis
ENSLBEG00000027930	lsm4	73	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSLBEG00000027930	lsm4	59	98.864	ENSUMAG00000009013	LSM4	71	96.970	Ursus_maritimus
ENSLBEG00000027930	lsm4	58	98.851	ENSVVUG00000008136	LSM4	50	96.939	Vulpes_vulpes
ENSLBEG00000027930	lsm4	66	96.939	ENSXETG00000024933	lsm4	71	96.939	Xenopus_tropicalis
ENSLBEG00000027930	lsm4	100	88.591	ENSXMAG00000026672	lsm4	76	88.591	Xiphophorus_maculatus