EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000028466 (Gene tree)
Gene ID: 110002116
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: pre-mRNA processing factor 18
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 6848 bases
Position: chrFKLU01000907.1:29234-36081
Accession: 110002116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000038194	PRP4	PF08799.11	9.9e-13	1	1
ENSLBEP00000038196	PRP4	PF08799.11	1e-12	1	1
ENSLBEP00000038194	Prp18	PF02840.15	4.8e-62	1	1
ENSLBEP00000038196	Prp18	PF02840.15	4.8e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000039760	-	1017	XM_020657768	ENSLBEP00000038194	338 (aa)	XP_020513424	-
ENSLBET00000039762	-	1023	-	ENSLBEP00000038196	340 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000028466's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000028466's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000028466	prpf18	99	83.728	ENSG00000165630	PRPF18	99	83.728	Homo_sapiens
ENSLBEG00000028466	prpf18	99	91.071	ENSAPOG00000024177	prpf18	98	91.071	Acanthochromis_polyacanthus
ENSLBEG00000028466	prpf18	99	83.432	ENSAMEG00000013591	-	99	83.432	Ailuropoda_melanoleuca
ENSLBEG00000028466	prpf18	99	90.179	ENSACIG00000001186	prpf18	98	90.179	Amphilophus_citrinellus
ENSLBEG00000028466	prpf18	97	91.185	ENSAOCG00000006572	prpf18	92	88.724	Amphiprion_ocellaris
ENSLBEG00000028466	prpf18	99	91.369	ENSAPEG00000004564	prpf18	98	91.369	Amphiprion_percula
ENSLBEG00000028466	prpf18	100	89.443	ENSATEG00000000303	prpf18	100	89.443	Anabas_testudineus
ENSLBEG00000028466	prpf18	98	81.682	ENSAPLG00000003387	-	96	83.180	Anas_platyrhynchos
ENSLBEG00000028466	prpf18	98	82.090	ENSACAG00000000818	-	97	82.090	Anolis_carolinensis
ENSLBEG00000028466	prpf18	99	83.432	ENSANAG00000037445	-	99	83.432	Aotus_nancymaae
ENSLBEG00000028466	prpf18	99	90.149	ENSACLG00000026296	prpf18	97	90.149	Astatotilapia_calliptera
ENSLBEG00000028466	prpf18	99	83.478	ENSAMXG00000012848	prpf18	100	82.286	Astyanax_mexicanus
ENSLBEG00000028466	prpf18	99	83.136	ENSBTAG00000017244	PRPF18	99	83.136	Bos_taurus
ENSLBEG00000028466	prpf18	97	39.589	WBGene00009320	F32B6.3	95	39.589	Caenorhabditis_elegans
ENSLBEG00000028466	prpf18	99	83.432	ENSCJAG00000009432	-	99	83.432	Callithrix_jacchus
ENSLBEG00000028466	prpf18	99	83.432	ENSCAFG00000004735	-	99	83.432	Canis_familiaris
ENSLBEG00000028466	prpf18	99	83.432	ENSCAFG00020007712	-	99	83.432	Canis_lupus_dingo
ENSLBEG00000028466	prpf18	99	83.136	ENSCHIG00000000499	-	99	83.136	Capra_hircus
ENSLBEG00000028466	prpf18	99	83.136	ENSTSYG00000003517	-	99	83.136	Carlito_syrichta
ENSLBEG00000028466	prpf18	99	83.728	ENSCPOG00000021069	-	99	83.728	Cavia_porcellus
ENSLBEG00000028466	prpf18	99	83.432	ENSCCAG00000036822	-	99	83.432	Cebus_capucinus
ENSLBEG00000028466	prpf18	99	73.077	ENSCATG00000016633	-	99	73.077	Cercocebus_atys
ENSLBEG00000028466	prpf18	99	83.432	ENSCLAG00000011770	-	99	83.432	Chinchilla_lanigera
ENSLBEG00000028466	prpf18	99	81.556	ENSCSAG00000013109	-	99	81.556	Chlorocebus_sabaeus
ENSLBEG00000028466	prpf18	99	77.714	ENSCPBG00000003100	-	97	78.571	Chrysemys_picta_bellii
ENSLBEG00000028466	prpf18	97	55.060	ENSCING00000020481	-	95	55.060	Ciona_intestinalis
ENSLBEG00000028466	prpf18	97	54.599	ENSCSAVG00000010546	-	96	54.303	Ciona_savignyi
ENSLBEG00000028466	prpf18	99	83.728	ENSCANG00000034900	-	99	83.728	Colobus_angolensis_palliatus
ENSLBEG00000028466	prpf18	99	83.136	ENSCGRG00001023665	Prpf18	99	83.136	Cricetulus_griseus_chok1gshd
ENSLBEG00000028466	prpf18	99	83.136	ENSCGRG00000014690	Prpf18	99	83.136	Cricetulus_griseus_crigri
ENSLBEG00000028466	prpf18	100	87.390	ENSCSEG00000005536	prpf18	99	87.390	Cynoglossus_semilaevis
ENSLBEG00000028466	prpf18	99	87.798	ENSCVAG00000012401	prpf18	100	86.510	Cyprinodon_variegatus
ENSLBEG00000028466	prpf18	99	85.460	ENSDARG00000058306	prpf18	98	85.460	Danio_rerio
ENSLBEG00000028466	prpf18	99	83.432	ENSDNOG00000035607	-	99	83.432	Dasypus_novemcinctus
ENSLBEG00000028466	prpf18	99	83.136	ENSDORG00000000858	Prpf18	99	83.136	Dipodomys_ordii
ENSLBEG00000028466	prpf18	99	48.949	FBgn0027784	Prp18	96	48.949	Drosophila_melanogaster
ENSLBEG00000028466	prpf18	87	84.014	ENSETEG00000015060	-	86	84.014	Echinops_telfairi
ENSLBEG00000028466	prpf18	99	65.789	ENSEBUG00000016502	prpf18	97	64.912	Eptatretus_burgeri
ENSLBEG00000028466	prpf18	99	83.432	ENSEASG00005019373	-	99	83.432	Equus_asinus_asinus
ENSLBEG00000028466	prpf18	99	83.432	ENSECAG00000006997	PRPF18	99	83.432	Equus_caballus
ENSLBEG00000028466	prpf18	91	50.000	ENSEEUG00000001171	-	99	50.000	Erinaceus_europaeus
ENSLBEG00000028466	prpf18	98	86.228	ENSELUG00000022190	prpf18	97	86.228	Esox_lucius
ENSLBEG00000028466	prpf18	99	83.136	ENSFCAG00000004436	-	99	83.136	Felis_catus
ENSLBEG00000028466	prpf18	90	77.848	ENSFALG00000001912	-	95	78.165	Ficedula_albicollis
ENSLBEG00000028466	prpf18	98	57.143	ENSFDAG00000010713	-	97	57.143	Fukomys_damarensis
ENSLBEG00000028466	prpf18	94	86.875	ENSFDAG00000014026	-	100	86.875	Fukomys_damarensis
ENSLBEG00000028466	prpf18	81	93.407	ENSFHEG00000020125	prpf18	98	93.258	Fundulus_heteroclitus
ENSLBEG00000028466	prpf18	99	85.928	ENSGMOG00000012210	prpf18	99	84.118	Gadus_morhua
ENSLBEG00000028466	prpf18	98	81.682	ENSGALG00000043593	-	96	83.180	Gallus_gallus
ENSLBEG00000028466	prpf18	99	88.690	ENSGAFG00000006034	prpf18	98	88.690	Gambusia_affinis
ENSLBEG00000028466	prpf18	100	87.390	ENSGACG00000012232	prpf18	100	87.390	Gasterosteus_aculeatus
ENSLBEG00000028466	prpf18	99	81.250	ENSGAGG00000016878	-	97	81.250	Gopherus_agassizii
ENSLBEG00000028466	prpf18	91	82.692	ENSGGOG00000025188	-	95	82.692	Gorilla_gorilla
ENSLBEG00000028466	prpf18	99	90.149	ENSHBUG00000010264	prpf18	97	90.149	Haplochromis_burtoni
ENSLBEG00000028466	prpf18	99	83.432	ENSHGLG00000018534	PRPF18	99	83.432	Heterocephalus_glaber_female
ENSLBEG00000028466	prpf18	94	86.562	ENSHGLG00100012161	-	98	86.562	Heterocephalus_glaber_male
ENSLBEG00000028466	prpf18	98	92.169	ENSHCOG00000015987	prpf18	97	92.169	Hippocampus_comes
ENSLBEG00000028466	prpf18	98	79.070	ENSIPUG00000007432	prpf18	96	81.065	Ictalurus_punctatus
ENSLBEG00000028466	prpf18	95	85.494	ENSSTOG00000008735	-	95	85.494	Ictidomys_tridecemlineatus
ENSLBEG00000028466	prpf18	99	83.728	ENSJJAG00000024041	-	99	83.728	Jaculus_jaculus
ENSLBEG00000028466	prpf18	99	62.647	ENSJJAG00000015191	-	99	62.647	Jaculus_jaculus
ENSLBEG00000028466	prpf18	99	88.427	ENSKMAG00000012124	prpf18	98	88.690	Kryptolebias_marmoratus
ENSLBEG00000028466	prpf18	99	80.655	ENSLACG00000009885	prpf18	100	79.240	Latimeria_chalumnae
ENSLBEG00000028466	prpf18	99	84.866	ENSLOCG00000016736	prpf18	98	84.866	Lepisosteus_oculatus
ENSLBEG00000028466	prpf18	99	83.728	ENSLAFG00000007753	-	99	83.728	Loxodonta_africana
ENSLBEG00000028466	prpf18	99	83.728	ENSMFAG00000000540	-	99	83.728	Macaca_fascicularis
ENSLBEG00000028466	prpf18	99	83.728	ENSMMUG00000015071	PRPF18	93	92.715	Macaca_mulatta
ENSLBEG00000028466	prpf18	99	83.728	ENSMNEG00000024679	-	99	83.728	Macaca_nemestrina
ENSLBEG00000028466	prpf18	99	68.343	ENSMLEG00000031715	-	99	68.343	Mandrillus_leucophaeus
ENSLBEG00000028466	prpf18	98	90.361	ENSMAMG00000006610	prpf18	97	90.361	Mastacembelus_armatus
ENSLBEG00000028466	prpf18	99	90.149	ENSMZEG00005019392	prpf18	97	90.149	Maylandia_zebra
ENSLBEG00000028466	prpf18	98	81.682	ENSMGAG00000005023	-	96	83.180	Meleagris_gallopavo
ENSLBEG00000028466	prpf18	99	84.024	ENSMICG00000006572	-	99	84.024	Microcebus_murinus
ENSLBEG00000028466	prpf18	99	83.728	ENSMOCG00000021468	Prpf18	99	83.728	Microtus_ochrogaster
ENSLBEG00000028466	prpf18	99	89.881	ENSMMOG00000013012	prpf18	98	89.881	Mola_mola
ENSLBEG00000028466	prpf18	99	74.138	ENSMODG00000016902	-	94	74.927	Monodelphis_domestica
ENSLBEG00000028466	prpf18	99	75.371	ENSMODG00000024043	-	98	75.371	Monodelphis_domestica
ENSLBEG00000028466	prpf18	100	81.341	ENSMALG00000005486	prpf18	100	81.633	Monopterus_albus
ENSLBEG00000028466	prpf18	99	83.136	MGP_CAROLIEiJ_G0023143	Prpf18	100	90.411	Mus_caroli
ENSLBEG00000028466	prpf18	99	83.136	ENSMUSG00000039449	Prpf18	100	90.411	Mus_musculus
ENSLBEG00000028466	prpf18	99	83.432	MGP_PahariEiJ_G0019203	Prpf18	100	90.411	Mus_pahari
ENSLBEG00000028466	prpf18	99	82.840	MGP_SPRETEiJ_G0024061	Prpf18	100	90.411	Mus_spretus
ENSLBEG00000028466	prpf18	99	83.136	ENSMPUG00000000938	-	99	83.136	Mustela_putorius_furo
ENSLBEG00000028466	prpf18	99	82.840	ENSMLUG00000009200	-	99	82.840	Myotis_lucifugus
ENSLBEG00000028466	prpf18	99	83.432	ENSNGAG00000012500	-	99	83.432	Nannospalax_galili
ENSLBEG00000028466	prpf18	68	83.043	ENSNGAG00000023550	-	82	83.043	Nannospalax_galili
ENSLBEG00000028466	prpf18	99	90.448	ENSNBRG00000001778	prpf18	97	90.448	Neolamprologus_brichardi
ENSLBEG00000028466	prpf18	99	83.728	ENSNLEG00000012186	-	99	83.728	Nomascus_leucogenys
ENSLBEG00000028466	prpf18	77	72.973	ENSMEUG00000005032	-	75	72.973	Notamacropus_eugenii
ENSLBEG00000028466	prpf18	76	63.602	ENSOPRG00000002153	-	98	63.602	Ochotona_princeps
ENSLBEG00000028466	prpf18	99	82.840	ENSODEG00000003770	-	99	82.840	Octodon_degus
ENSLBEG00000028466	prpf18	97	89.058	ENSONIG00000014854	prpf18	93	89.846	Oreochromis_niloticus
ENSLBEG00000028466	prpf18	100	81.871	ENSOANG00000015404	-	100	81.871	Ornithorhynchus_anatinus
ENSLBEG00000028466	prpf18	99	83.728	ENSOCUG00000027756	-	96	85.714	Oryctolagus_cuniculus
ENSLBEG00000028466	prpf18	99	86.957	ENSORLG00000010293	prpf18	98	86.957	Oryzias_latipes
ENSLBEG00000028466	prpf18	99	89.286	ENSORLG00020001530	prpf18	98	89.286	Oryzias_latipes_hni
ENSLBEG00000028466	prpf18	99	89.286	ENSORLG00015013705	prpf18	98	89.286	Oryzias_latipes_hsok
ENSLBEG00000028466	prpf18	99	88.988	ENSOMEG00000009167	prpf18	98	88.988	Oryzias_melastigma
ENSLBEG00000028466	prpf18	99	83.136	ENSOGAG00000007294	-	99	83.136	Otolemur_garnettii
ENSLBEG00000028466	prpf18	94	86.250	ENSOARG00000006243	-	94	86.250	Ovis_aries
ENSLBEG00000028466	prpf18	99	83.728	ENSPPAG00000041959	-	99	83.728	Pan_paniscus
ENSLBEG00000028466	prpf18	99	83.136	ENSPPRG00000000107	-	99	83.136	Panthera_pardus
ENSLBEG00000028466	prpf18	99	83.136	ENSPTIG00000021094	-	99	83.136	Panthera_tigris_altaica
ENSLBEG00000028466	prpf18	99	83.728	ENSPTRG00000002306	PRPF18	99	83.728	Pan_troglodytes
ENSLBEG00000028466	prpf18	99	83.432	ENSPANG00000023346	-	99	83.432	Papio_anubis
ENSLBEG00000028466	prpf18	86	98.113	ENSPKIG00000014128	prpf18	96	81.197	Paramormyrops_kingsleyae
ENSLBEG00000028466	prpf18	99	81.845	ENSPSIG00000016064	-	97	81.845	Pelodiscus_sinensis
ENSLBEG00000028466	prpf18	99	82.789	ENSPMGG00000016486	prpf18	98	82.789	Periophthalmus_magnuspinnatus
ENSLBEG00000028466	prpf18	99	83.432	ENSPEMG00000013704	Prpf18	99	83.432	Peromyscus_maniculatus_bairdii
ENSLBEG00000028466	prpf18	98	71.681	ENSPMAG00000000204	prpf18	98	71.681	Petromyzon_marinus
ENSLBEG00000028466	prpf18	92	80.380	ENSPCIG00000012963	-	99	80.380	Phascolarctos_cinereus
ENSLBEG00000028466	prpf18	99	84.928	ENSPFOG00000017611	prpf18	100	83.714	Poecilia_formosa
ENSLBEG00000028466	prpf18	99	87.202	ENSPLAG00000000369	prpf18	100	85.924	Poecilia_latipinna
ENSLBEG00000028466	prpf18	99	87.202	ENSPMEG00000005183	prpf18	100	85.924	Poecilia_mexicana
ENSLBEG00000028466	prpf18	99	86.607	ENSPREG00000015232	prpf18	100	85.337	Poecilia_reticulata
ENSLBEG00000028466	prpf18	99	83.432	ENSPPYG00000002101	PRPF18	99	83.432	Pongo_abelii
ENSLBEG00000028466	prpf18	99	65.089	ENSPCAG00000010833	-	99	65.089	Procavia_capensis
ENSLBEG00000028466	prpf18	87	88.435	ENSPCOG00000013057	-	93	88.435	Propithecus_coquereli
ENSLBEG00000028466	prpf18	98	50.000	ENSPVAG00000002947	-	98	50.000	Pteropus_vampyrus
ENSLBEG00000028466	prpf18	97	91.437	ENSPNYG00000003554	prpf18	96	91.437	Pundamilia_nyererei
ENSLBEG00000028466	prpf18	100	81.766	ENSPNAG00000023151	prpf18	100	81.766	Pygocentrus_nattereri
ENSLBEG00000028466	prpf18	99	83.136	ENSRNOG00000018396	Prpf18	99	83.136	Rattus_norvegicus
ENSLBEG00000028466	prpf18	99	84.024	ENSRBIG00000028028	-	99	84.024	Rhinopithecus_bieti
ENSLBEG00000028466	prpf18	99	83.728	ENSRROG00000040695	-	99	83.728	Rhinopithecus_roxellana
ENSLBEG00000028466	prpf18	99	83.432	ENSSBOG00000034482	-	99	83.432	Saimiri_boliviensis_boliviensis
ENSLBEG00000028466	prpf18	99	83.832	ENSSHAG00000016463	-	100	81.579	Sarcophilus_harrisii
ENSLBEG00000028466	prpf18	100	67.836	ENSSHAG00000009669	-	100	67.836	Sarcophilus_harrisii
ENSLBEG00000028466	prpf18	78	43.939	ENSSFOG00015021154	-	89	48.069	Scleropages_formosus
ENSLBEG00000028466	prpf18	98	79.420	ENSSFOG00015022118	prpf18	100	75.504	Scleropages_formosus
ENSLBEG00000028466	prpf18	98	89.458	ENSSMAG00000005308	prpf18	96	90.798	Scophthalmus_maximus
ENSLBEG00000028466	prpf18	98	93.072	ENSSDUG00000015428	prpf18	97	93.072	Seriola_dumerili
ENSLBEG00000028466	prpf18	98	92.771	ENSSLDG00000023989	prpf18	97	92.771	Seriola_lalandi_dorsalis
ENSLBEG00000028466	prpf18	99	55.030	ENSSARG00000005307	-	99	55.030	Sorex_araneus
ENSLBEG00000028466	prpf18	99	82.440	ENSSPUG00000002619	-	97	82.440	Sphenodon_punctatus
ENSLBEG00000028466	prpf18	99	91.369	ENSSPAG00000019502	prpf18	98	91.369	Stegastes_partitus
ENSLBEG00000028466	prpf18	99	83.432	ENSSSCG00000026354	-	99	83.432	Sus_scrofa
ENSLBEG00000028466	prpf18	98	81.682	ENSTGUG00000002286	-	96	82.875	Taeniopygia_guttata
ENSLBEG00000028466	prpf18	99	86.866	ENSTRUG00000011278	prpf18	100	85.044	Takifugu_rubripes
ENSLBEG00000028466	prpf18	100	85.337	ENSTNIG00000000911	prpf18	100	85.337	Tetraodon_nigroviridis
ENSLBEG00000028466	prpf18	66	98.718	ENSTBEG00000013011	-	65	98.718	Tupaia_belangeri
ENSLBEG00000028466	prpf18	99	84.024	ENSTTRG00000011117	PRPF18	99	84.024	Tursiops_truncatus
ENSLBEG00000028466	prpf18	92	87.138	ENSUAMG00000001815	-	93	87.138	Ursus_americanus
ENSLBEG00000028466	prpf18	99	78.402	ENSUMAG00000012329	-	99	78.402	Ursus_maritimus
ENSLBEG00000028466	prpf18	99	77.515	ENSVPAG00000011486	-	99	77.515	Vicugna_pacos
ENSLBEG00000028466	prpf18	99	83.432	ENSVVUG00000005453	-	99	83.432	Vulpes_vulpes
ENSLBEG00000028466	prpf18	98	74.702	ENSXETG00000024057	prpf18	97	74.405	Xenopus_tropicalis
ENSLBEG00000028466	prpf18	99	86.982	ENSXCOG00000020414	prpf18	100	85.714	Xiphophorus_couchianus
ENSLBEG00000028466	prpf18	99	87.500	ENSXMAG00000004713	prpf18	91	86.217	Xiphophorus_maculatus