EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSLBEG00000028689 (Gene tree)
Gene ID
109992705
Gene Symbol
upf3b
Alias
zgc:174674|zgc:66390
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Labrus_bergylta
Status
putative
Strand
Minus strand
Length
4002 bases
Position
chrFKLU01000238.1:289411-293412
Accession
109992705
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLBEP00000038475Smg4_UPF3PF03467.151.8e-5311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLBET00000040068-2788XM_020645430ENSLBEP00000038475456 (aa)XP_020501086-
Gene Model
Click here to download ENSLBEG00000028689's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000028689's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLBEG00000028689upf3b5459.600ENSG00000169062UPF3A5058.800Homo_sapiens
ENSLBEG00000028689upf3b5965.505ENSG00000125351UPF3B9667.143Homo_sapiens
ENSLBEG00000028689upf3b6188.809ENSAPOG00000012775upf3b6089.455Acanthochromis_polyacanthus
ENSLBEG00000028689upf3b5559.608ENSAMEG00000004259UPF3A5459.608Ailuropoda_melanoleuca
ENSLBEG00000028689upf3b5965.505ENSAMEG00000000163UPF3B6065.505Ailuropoda_melanoleuca
ENSLBEG00000028689upf3b5880.682ENSACIG00000013582upf3b5985.507Amphilophus_citrinellus
ENSLBEG00000028689upf3b6484.828ENSAOCG00000000706upf3b6088.364Amphiprion_ocellaris
ENSLBEG00000028689upf3b6485.862ENSAPEG00000005545upf3b6089.455Amphiprion_percula
ENSLBEG00000028689upf3b5989.591ENSATEG00000018742upf3b6089.170Anabas_testudineus
ENSLBEG00000028689upf3b5361.475ENSACAG00000001540UPF3A5661.475Anolis_carolinensis
ENSLBEG00000028689upf3b6266.438ENSACAG00000003625UPF3B6267.123Anolis_carolinensis
ENSLBEG00000028689upf3b5965.505ENSANAG00000021894-9766.986Aotus_nancymaae
ENSLBEG00000028689upf3b5452.846ENSANAG00000021713UPF3A5056.400Aotus_nancymaae
ENSLBEG00000028689upf3b5960.627ENSANAG00000025598-8454.874Aotus_nancymaae
ENSLBEG00000028689upf3b5987.313ENSACLG00000001649upf3b6087.004Astatotilapia_calliptera
ENSLBEG00000028689upf3b5679.537ENSAMXG00000000199upf3b8679.537Astyanax_mexicanus
ENSLBEG00000028689upf3b5666.176ENSBTAG00000035615UPF3B8866.176Bos_taurus
ENSLBEG00000028689upf3b5965.505ENSCJAG00000004975UPF3B9766.507Callithrix_jacchus
ENSLBEG00000028689upf3b5454.065ENSCJAG00000019102UPF3A5158.400Callithrix_jacchus
ENSLBEG00000028689upf3b5965.505ENSCAFG00000018426UPF3B6265.505Canis_familiaris
ENSLBEG00000028689upf3b5555.200ENSCAFG00000006504UPF3A5259.449Canis_familiaris
ENSLBEG00000028689upf3b5555.200ENSCAFG00020014268UPF3A5159.449Canis_lupus_dingo
ENSLBEG00000028689upf3b5962.021ENSCAFG00020004074UPF3B6062.021Canis_lupus_dingo
ENSLBEG00000028689upf3b5665.809ENSCHIG00000018011-8865.809Capra_hircus
ENSLBEG00000028689upf3b5962.667ENSCHIG00000000247-6162.667Capra_hircus
ENSLBEG00000028689upf3b5549.004ENSCHIG00000011454-5149.576Capra_hircus
ENSLBEG00000028689upf3b5965.157ENSTSYG00000014690UPF3B9661.395Carlito_syrichta
ENSLBEG00000028689upf3b5554.217ENSCPOG00000006824UPF3A5758.498Cavia_porcellus
ENSLBEG00000028689upf3b5454.065ENSCCAG00000018406UPF3A5158.400Cebus_capucinus
ENSLBEG00000028689upf3b6444.373ENSCCAG00000029813-8751.471Cebus_capucinus
ENSLBEG00000028689upf3b5459.761ENSCATG00000029733UPF3A5258.964Cercocebus_atys
ENSLBEG00000028689upf3b5965.505ENSCATG00000017506UPF3B9766.986Cercocebus_atys
ENSLBEG00000028689upf3b5965.854ENSCLAG00000003260UPF3B6066.090Chinchilla_lanigera
ENSLBEG00000028689upf3b5459.449ENSCSAG00000017388UPF3A5258.268Chlorocebus_sabaeus
ENSLBEG00000028689upf3b5962.667ENSCSAG00000018348UPF3B6163.000Chlorocebus_sabaeus
ENSLBEG00000028689upf3b6462.667ENSCPBG00000020685UPF3B6360.333Chrysemys_picta_bellii
ENSLBEG00000028689upf3b5666.176ENSCANG00000029220UPF3B8566.544Colobus_angolensis_palliatus
ENSLBEG00000028689upf3b5459.600ENSCGRG00001017387Upf3a5659.600Cricetulus_griseus_chok1gshd
ENSLBEG00000028689upf3b5964.014ENSCGRG00001006858-6064.014Cricetulus_griseus_chok1gshd
ENSLBEG00000028689upf3b5962.976ENSCGRG00001013643-7764.014Cricetulus_griseus_chok1gshd
ENSLBEG00000028689upf3b5459.600ENSCGRG00000001468Upf3a5659.600Cricetulus_griseus_crigri
ENSLBEG00000028689upf3b5171.368ENSCGRG00000007627Upf3b5671.368Cricetulus_griseus_crigri
ENSLBEG00000028689upf3b5988.433ENSCSEG00000002046upf3b6184.247Cynoglossus_semilaevis
ENSLBEG00000028689upf3b5985.556ENSCVAG00000005030upf3b6185.870Cyprinodon_variegatus
ENSLBEG00000028689upf3b5977.941ENSDARG00000000489upf3b6077.224Danio_rerio
ENSLBEG00000028689upf3b5459.600ENSDNOG00000034391UPF3A5458.400Dasypus_novemcinctus
ENSLBEG00000028689upf3b5962.667ENSDNOG00000008665UPF3B6162.667Dasypus_novemcinctus
ENSLBEG00000028689upf3b6660.938ENSDORG00000006077Upf3b6861.180Dipodomys_ordii
ENSLBEG00000028689upf3b5443.902ENSETEG00000010110UPF3A5148.031Echinops_telfairi
ENSLBEG00000028689upf3b5561.176ENSEASG00005021884UPF3A5259.375Equus_asinus_asinus
ENSLBEG00000028689upf3b5960.976ENSEASG00005012919UPF3B6063.066Equus_asinus_asinus
ENSLBEG00000028689upf3b5561.176ENSECAG00000017141UPF3A5259.375Equus_caballus
ENSLBEG00000028689upf3b5960.976ENSECAG00000016947UPF3B6063.066Equus_caballus
ENSLBEG00000028689upf3b5983.764ENSELUG00000020389upf3b6080.887Esox_lucius
ENSLBEG00000028689upf3b5462.000ENSFCAG00000014602UPF3A5062.000Felis_catus
ENSLBEG00000028689upf3b5965.157ENSFCAG00000004388UPF3B6065.157Felis_catus
ENSLBEG00000028689upf3b5965.854ENSFDAG00000018869UPF3B6065.854Fukomys_damarensis
ENSLBEG00000028689upf3b5984.444ENSFHEG00000017895upf3b6084.783Fundulus_heteroclitus
ENSLBEG00000028689upf3b6474.744ENSGMOG00000001621upf3b5978.261Gadus_morhua
ENSLBEG00000028689upf3b5767.143ENSGALG00000008618UPF3B6266.554Gallus_gallus
ENSLBEG00000028689upf3b5985.926ENSGAFG00000000829upf3b6186.232Gambusia_affinis
ENSLBEG00000028689upf3b6085.455ENSGACG00000017435upf3b9485.938Gasterosteus_aculeatus
ENSLBEG00000028689upf3b6466.443ENSGAGG00000001219UPF3B6466.000Gopherus_agassizii
ENSLBEG00000028689upf3b5459.839ENSGGOG00000015428UPF3A5158.233Gorilla_gorilla
ENSLBEG00000028689upf3b5965.505ENSGGOG00000023995UPF3B8566.544Gorilla_gorilla
ENSLBEG00000028689upf3b5987.313ENSHBUG00000017393upf3b6087.004Haplochromis_burtoni
ENSLBEG00000028689upf3b5960.279ENSHGLG00000011189-6860.279Heterocephalus_glaber_female
ENSLBEG00000028689upf3b5964.808ENSHGLG00000019582-6064.808Heterocephalus_glaber_female
ENSLBEG00000028689upf3b5456.800ENSHGLG00000001544UPF3A5856.693Heterocephalus_glaber_female
ENSLBEG00000028689upf3b5964.808ENSHGLG00100002042-6264.808Heterocephalus_glaber_male
ENSLBEG00000028689upf3b5960.279ENSHGLG00100001889-6860.279Heterocephalus_glaber_male
ENSLBEG00000028689upf3b5456.800ENSHGLG00100013244UPF3A5856.693Heterocephalus_glaber_male
ENSLBEG00000028689upf3b6084.364ENSHCOG00000017004upf3b5984.364Hippocampus_comes
ENSLBEG00000028689upf3b5980.443ENSIPUG00000019249upf3b6480.866Ictalurus_punctatus
ENSLBEG00000028689upf3b5965.505ENSSTOG00000001101UPF3B6065.505Ictidomys_tridecemlineatus
ENSLBEG00000028689upf3b5963.763ENSJJAG00000000053Upf3b6064.014Jaculus_jaculus
ENSLBEG00000028689upf3b5987.732ENSKMAG00000020300upf3b6187.365Kryptolebias_marmoratus
ENSLBEG00000028689upf3b5877.358ENSLACG00000008691UPF3B5975.180Latimeria_chalumnae
ENSLBEG00000028689upf3b5979.182ENSLOCG00000015238upf3b6676.552Lepisosteus_oculatus
ENSLBEG00000028689upf3b5252.033ENSLAFG00000023358UPF3A5750.407Loxodonta_africana
ENSLBEG00000028689upf3b6064.726ENSLAFG00000001267UPF3B6164.966Loxodonta_africana
ENSLBEG00000028689upf3b6164.966ENSMFAG00000045414UPF3B9766.986Macaca_fascicularis
ENSLBEG00000028689upf3b5260.082ENSMMUG00000007449UPF3A5259.259Macaca_mulatta
ENSLBEG00000028689upf3b6164.966ENSMMUG00000020222UPF3B9766.986Macaca_mulatta
ENSLBEG00000028689upf3b5359.836ENSMNEG00000036402UPF3A5059.016Macaca_nemestrina
ENSLBEG00000028689upf3b6164.966ENSMNEG00000039794UPF3B9766.986Macaca_nemestrina
ENSLBEG00000028689upf3b5965.505ENSMLEG00000010999UPF3B9766.986Mandrillus_leucophaeus
ENSLBEG00000028689upf3b5355.000ENSMLEG00000014726UPF3A5659.016Mandrillus_leucophaeus
ENSLBEG00000028689upf3b5987.313ENSMZEG00005007871upf3b6087.004Maylandia_zebra
ENSLBEG00000028689upf3b5961.672ENSMAUG00000008705Upf3b6061.938Mesocricetus_auratus
ENSLBEG00000028689upf3b5666.176ENSMICG00000001743UPF3B8566.176Microcebus_murinus
ENSLBEG00000028689upf3b5961.333ENSMOCG00000017893Upf3b6161.589Microtus_ochrogaster
ENSLBEG00000028689upf3b5459.200ENSMOCG00000000550Upf3a6759.200Microtus_ochrogaster
ENSLBEG00000028689upf3b5984.444ENSMMOG00000004183upf3b6284.173Mola_mola
ENSLBEG00000028689upf3b5363.265ENSMODG00000003159UPF3A5563.265Monodelphis_domestica
ENSLBEG00000028689upf3b5370.370ENSMODG00000010232UPF3B5770.370Monodelphis_domestica
ENSLBEG00000028689upf3b5984.758ENSMALG00000008042upf3b6084.477Monopterus_albus
ENSLBEG00000028689upf3b5963.066MGP_CAROLIEiJ_G0032999Upf3b6660.920Mus_caroli
ENSLBEG00000028689upf3b5459.600MGP_CAROLIEiJ_G0030848Upf3a5859.600Mus_caroli
ENSLBEG00000028689upf3b5963.066ENSMUSG00000036572Upf3b6660.920Mus_musculus
ENSLBEG00000028689upf3b5459.200ENSMUSG00000038398Upf3a5759.200Mus_musculus
ENSLBEG00000028689upf3b5963.415MGP_PahariEiJ_G0031543Upf3b6661.494Mus_pahari
ENSLBEG00000028689upf3b5459.600MGP_PahariEiJ_G0021311Upf3a5759.600Mus_pahari
ENSLBEG00000028689upf3b5963.066MGP_SPRETEiJ_G0034152Upf3b6660.920Mus_spretus
ENSLBEG00000028689upf3b5459.200MGP_SPRETEiJ_G0031958Upf3a5759.200Mus_spretus
ENSLBEG00000028689upf3b5459.524ENSMPUG00000009139UPF3A5059.761Mustela_putorius_furo
ENSLBEG00000028689upf3b5965.505ENSMPUG00000001531UPF3B6265.744Mustela_putorius_furo
ENSLBEG00000028689upf3b5257.025ENSMLUG00000015905UPF3A5660.976Myotis_lucifugus
ENSLBEG00000028689upf3b5965.854ENSMLUG00000010821UPF3B6065.854Myotis_lucifugus
ENSLBEG00000028689upf3b5457.769ENSNGAG00000019314Upf3a5857.874Nannospalax_galili
ENSLBEG00000028689upf3b5765.217ENSNGAG00000008231Upf3b6064.014Nannospalax_galili
ENSLBEG00000028689upf3b5372.428ENSNLEG00000014897UPF3B6574.380Nomascus_leucogenys
ENSLBEG00000028689upf3b5459.200ENSNLEG00000007563UPF3A5157.600Nomascus_leucogenys
ENSLBEG00000028689upf3b5866.667ENSODEG00000002186-6566.192Octodon_degus
ENSLBEG00000028689upf3b5989.513ENSONIG00000002536upf3b6088.809Oreochromis_niloticus
ENSLBEG00000028689upf3b5660.000ENSOANG00000002594-6060.000Ornithorhynchus_anatinus
ENSLBEG00000028689upf3b5253.719ENSOANG00000006985-5753.719Ornithorhynchus_anatinus
ENSLBEG00000028689upf3b5962.000ENSOCUG00000010213UPF3B6162.000Oryctolagus_cuniculus
ENSLBEG00000028689upf3b5254.508ENSOCUG00000008450UPF3A5051.172Oryctolagus_cuniculus
ENSLBEG00000028689upf3b5863.899ENSORLG00000010911upf3a5763.899Oryzias_latipes
ENSLBEG00000028689upf3b6181.949ENSORLG00000001026upf3b6181.949Oryzias_latipes
ENSLBEG00000028689upf3b6181.588ENSORLG00020003758upf3b8574.319Oryzias_latipes_hni
ENSLBEG00000028689upf3b5851.282ENSORLG00020014317upf3a5364.981Oryzias_latipes_hni
ENSLBEG00000028689upf3b6181.227ENSORLG00015012954upf3b6181.227Oryzias_latipes_hsok
ENSLBEG00000028689upf3b6181.588ENSOMEG00000014736upf3b6082.182Oryzias_melastigma
ENSLBEG00000028689upf3b5456.098ENSOGAG00000004788UPF3A5860.400Otolemur_garnettii
ENSLBEG00000028689upf3b5964.808ENSOGAG00000004643-6064.808Otolemur_garnettii
ENSLBEG00000028689upf3b5865.248ENSOGAG00000033003-6164.789Otolemur_garnettii
ENSLBEG00000028689upf3b5459.036ENSOARG00000009004UPF3A5157.430Ovis_aries
ENSLBEG00000028689upf3b5962.046ENSOARG00000016051-6262.046Ovis_aries
ENSLBEG00000028689upf3b5852.632ENSOARG00000007869-6351.504Ovis_aries
ENSLBEG00000028689upf3b5454.656ENSPPAG00000042267UPF3A5258.039Pan_paniscus
ENSLBEG00000028689upf3b5965.505ENSPPAG00000040390UPF3B8566.544Pan_paniscus
ENSLBEG00000028689upf3b5965.157ENSPPRG00000023536UPF3B6065.157Panthera_pardus
ENSLBEG00000028689upf3b5462.000ENSPPRG00000025062UPF3A5062.000Panthera_pardus
ENSLBEG00000028689upf3b5965.157ENSPTIG00000015264UPF3B8565.809Panthera_tigris_altaica
ENSLBEG00000028689upf3b5242.678ENSPTRG00000041187-5040.945Pan_troglodytes
ENSLBEG00000028689upf3b5965.505ENSPTRG00000022228UPF3B8566.544Pan_troglodytes
ENSLBEG00000028689upf3b5454.656ENSPTRG00000006073UPF3A5158.268Pan_troglodytes
ENSLBEG00000028689upf3b5965.505ENSPANG00000000900UPF3B9766.986Papio_anubis
ENSLBEG00000028689upf3b5459.363ENSPANG00000004346UPF3A5258.566Papio_anubis
ENSLBEG00000028689upf3b6673.463ENSPKIG00000019226upf3b9384.028Paramormyrops_kingsleyae
ENSLBEG00000028689upf3b5263.374ENSPSIG00000007468UPF3A5763.374Pelodiscus_sinensis
ENSLBEG00000028689upf3b5782.824ENSPMGG00000016067upf3b9582.824Periophthalmus_magnuspinnatus
ENSLBEG00000028689upf3b5964.460ENSPEMG00000012352Upf3b6064.706Peromyscus_maniculatus_bairdii
ENSLBEG00000028689upf3b5459.761ENSPEMG00000019968-5760.000Peromyscus_maniculatus_bairdii
ENSLBEG00000028689upf3b5565.476ENSPCIG00000028914UPF3B5165.863Phascolarctos_cinereus
ENSLBEG00000028689upf3b5986.667ENSPLAG00000019922upf3b6186.957Poecilia_latipinna
ENSLBEG00000028689upf3b5986.667ENSPLAG00000005105upf3b6186.957Poecilia_latipinna
ENSLBEG00000028689upf3b5986.667ENSPMEG00000023532upf3b6186.957Poecilia_mexicana
ENSLBEG00000028689upf3b5665.934ENSPPYG00000020675-8266.300Pongo_abelii
ENSLBEG00000028689upf3b5459.200ENSPPYG00000005536UPF3A5158.268Pongo_abelii
ENSLBEG00000028689upf3b6061.639ENSPCAG00000009464UPF3B6361.889Procavia_capensis
ENSLBEG00000028689upf3b5450.000ENSPCAG00000013124UPF3A5048.800Procavia_capensis
ENSLBEG00000028689upf3b6660.625ENSPCOG00000021960UPF3B8565.809Propithecus_coquereli
ENSLBEG00000028689upf3b5452.439ENSPVAG00000005656UPF3A5156.693Pteropus_vampyrus
ENSLBEG00000028689upf3b5953.667ENSPVAG00000014075UPF3B6253.667Pteropus_vampyrus
ENSLBEG00000028689upf3b5987.313ENSPNYG00000009846upf3b6187.004Pundamilia_nyererei
ENSLBEG00000028689upf3b5981.919ENSPNAG00000021528upf3b8682.171Pygocentrus_nattereri
ENSLBEG00000028689upf3b5459.600ENSRNOG00000017397Upf3a6059.449Rattus_norvegicus
ENSLBEG00000028689upf3b5963.066ENSRNOG00000039994Upf3b6063.066Rattus_norvegicus
ENSLBEG00000028689upf3b5255.230ENSRBIG00000034007UPF3A5558.000Rhinopithecus_bieti
ENSLBEG00000028689upf3b5260.082ENSRROG00000012212UPF3A5059.504Rhinopithecus_roxellana
ENSLBEG00000028689upf3b5965.505ENSRROG00000041031UPF3B9766.986Rhinopithecus_roxellana
ENSLBEG00000028689upf3b5965.505ENSSBOG00000019740UPF3B9966.507Saimiri_boliviensis_boliviensis
ENSLBEG00000028689upf3b6162.626ENSSHAG00000008634UPF3B6262.963Sarcophilus_harrisii
ENSLBEG00000028689upf3b5362.602ENSSHAG00000009895UPF3A5662.602Sarcophilus_harrisii
ENSLBEG00000028689upf3b6082.246ENSSFOG00015005614upf3b6182.246Scleropages_formosus
ENSLBEG00000028689upf3b6484.880ENSSMAG00000012913upf3b8488.672Scophthalmus_maximus
ENSLBEG00000028689upf3b5988.806ENSSDUG00000005682upf3b6088.448Seriola_dumerili
ENSLBEG00000028689upf3b5989.179ENSSLDG00000003130upf3b6088.809Seriola_lalandi_dorsalis
ENSLBEG00000028689upf3b5238.912ENSSARG00000007262UPF3A5647.934Sorex_araneus
ENSLBEG00000028689upf3b5366.135ENSSARG00000004147UPF3B5867.984Sorex_araneus
ENSLBEG00000028689upf3b5863.830ENSSPUG00000013082UPF3B5863.830Sphenodon_punctatus
ENSLBEG00000028689upf3b5989.591ENSSPAG00000009989upf3b6089.818Stegastes_partitus
ENSLBEG00000028689upf3b5453.441ENSSSCG00000024679UPF3A5954.400Sus_scrofa
ENSLBEG00000028689upf3b6461.889ENSSSCG00000012617UPF3B6065.157Sus_scrofa
ENSLBEG00000028689upf3b5463.200ENSTGUG00000009493UPF3A6163.200Taeniopygia_guttata
ENSLBEG00000028689upf3b5472.541ENSTGUG00000003413UPF3B5772.541Taeniopygia_guttata
ENSLBEG00000028689upf3b5784.291ENSTRUG00000010645upf3b6581.949Takifugu_rubripes
ENSLBEG00000028689upf3b5552.209ENSTNIG00000014973upf3a6052.209Tetraodon_nigroviridis
ENSLBEG00000028689upf3b5773.864ENSTNIG00000015763upf3b5868.214Tetraodon_nigroviridis
ENSLBEG00000028689upf3b5657.143ENSTBEG00000003229UPF3B5657.143Tupaia_belangeri
ENSLBEG00000028689upf3b5961.672ENSUAMG00000024565UPF3B6061.938Ursus_americanus
ENSLBEG00000028689upf3b5266.807ENSUMAG00000002150UPF3B5066.807Ursus_maritimus
ENSLBEG00000028689upf3b5259.917ENSVPAG00000003525UPF3A5857.851Vicugna_pacos
ENSLBEG00000028689upf3b5962.021ENSVVUG00000011594UPF3B9766.507Vulpes_vulpes
ENSLBEG00000028689upf3b5353.306ENSXETG00000002572upf3a5753.600Xenopus_tropicalis
ENSLBEG00000028689upf3b5073.593ENSXETG00000007440upf3b10073.593Xenopus_tropicalis
ENSLBEG00000028689upf3b5786.100ENSXCOG00000016586upf3b9885.204Xiphophorus_couchianus
ENSLBEG00000028689upf3b6086.232ENSXMAG00000013680upf3b6186.232Xiphophorus_maculatus

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