EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000028971 (Gene tree)
Gene ID: 109979772
Gene Symbol: rtca
Alias: cb158|rtcd1|sb:cb158|wu:fc62c03
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 8367 bases
Position: chrFKLU01009649.1:440-8806
Accession: 109979772
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000038793	RTC	PF01137.21	4.8e-88	1	1
ENSLBEP00000038793	RTC_insert	PF05189.13	4.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000040441	-	4242	XM_020628511	ENSLBEP00000038793	363 (aa)	XP_020484167	UPI0009B30DEA

Gene Model

Click here to download ENSLBEG00000028971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000028971's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000028971	rtca	88	99.373	ENSLBEG00000002448	-	99	99.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000028971	rtca	99	69.252	ENSG00000137996	RTCA	99	69.252	Homo_sapiens
ENSLBEG00000028971	rtca	99	87.258	ENSAPOG00000001345	rtca	99	87.258	Acanthochromis_polyacanthus
ENSLBEG00000028971	rtca	74	70.260	ENSAMEG00000008855	RTCA	100	70.260	Ailuropoda_melanoleuca
ENSLBEG00000028971	rtca	99	88.056	ENSACIG00000019643	rtca	99	88.056	Amphilophus_citrinellus
ENSLBEG00000028971	rtca	99	87.258	ENSAOCG00000014979	rtca	99	87.258	Amphiprion_ocellaris
ENSLBEG00000028971	rtca	99	86.981	ENSAPEG00000006945	rtca	99	86.981	Amphiprion_percula
ENSLBEG00000028971	rtca	96	88.825	ENSATEG00000006315	rtca	96	88.825	Anabas_testudineus
ENSLBEG00000028971	rtca	96	66.006	ENSAPLG00000015430	RTCA	100	66.006	Anas_platyrhynchos
ENSLBEG00000028971	rtca	99	69.806	ENSANAG00000025446	RTCA	99	69.806	Aotus_nancymaae
ENSLBEG00000028971	rtca	99	88.056	ENSACLG00000020770	rtca	98	88.056	Astatotilapia_calliptera
ENSLBEG00000028971	rtca	99	79.888	ENSAMXG00000043271	rtca	98	79.888	Astyanax_mexicanus
ENSLBEG00000028971	rtca	99	69.806	ENSBTAG00000006321	RTCA	99	69.806	Bos_taurus
ENSLBEG00000028971	rtca	99	69.529	ENSCJAG00000003398	RTCA	99	69.529	Callithrix_jacchus
ENSLBEG00000028971	rtca	99	69.252	ENSCAFG00000020010	RTCA	67	69.252	Canis_familiaris
ENSLBEG00000028971	rtca	99	69.252	ENSCAFG00020011528	RTCA	56	69.252	Canis_lupus_dingo
ENSLBEG00000028971	rtca	99	69.529	ENSCHIG00000018937	RTCA	99	69.529	Capra_hircus
ENSLBEG00000028971	rtca	99	68.975	ENSTSYG00000011305	RTCA	99	68.975	Carlito_syrichta
ENSLBEG00000028971	rtca	99	69.252	ENSCCAG00000021844	RTCA	98	70.732	Cebus_capucinus
ENSLBEG00000028971	rtca	99	67.112	ENSCATG00000019364	RTCA	100	68.608	Cercocebus_atys
ENSLBEG00000028971	rtca	87	69.304	ENSCLAG00000006125	RTCA	100	69.304	Chinchilla_lanigera
ENSLBEG00000028971	rtca	99	69.252	ENSCSAG00000001509	RTCA	99	69.252	Chlorocebus_sabaeus
ENSLBEG00000028971	rtca	99	68.698	ENSCHOG00000005211	RTCA	99	68.698	Choloepus_hoffmanni
ENSLBEG00000028971	rtca	99	66.389	ENSCPBG00000026658	RTCA	99	66.389	Chrysemys_picta_bellii
ENSLBEG00000028971	rtca	99	55.153	ENSCING00000007875	-	98	55.153	Ciona_intestinalis
ENSLBEG00000028971	rtca	99	55.153	ENSCSAVG00000007269	-	98	55.153	Ciona_savignyi
ENSLBEG00000028971	rtca	99	68.975	ENSCANG00000040106	RTCA	99	68.975	Colobus_angolensis_palliatus
ENSLBEG00000028971	rtca	74	70.260	ENSCGRG00001013163	Rtca	85	70.260	Cricetulus_griseus_chok1gshd
ENSLBEG00000028971	rtca	99	83.240	ENSCSEG00000000530	rtca	96	83.240	Cynoglossus_semilaevis
ENSLBEG00000028971	rtca	99	70.799	ENSCVAG00000021809	rtca	99	70.799	Cyprinodon_variegatus
ENSLBEG00000028971	rtca	99	78.947	ENSDARG00000002215	rtca	99	78.947	Danio_rerio
ENSLBEG00000028971	rtca	99	69.806	ENSDNOG00000000456	RTCA	99	69.806	Dasypus_novemcinctus
ENSLBEG00000028971	rtca	99	70.360	ENSDORG00000005448	Rtca	99	70.360	Dipodomys_ordii
ENSLBEG00000028971	rtca	99	39.722	FBgn0025630	Rtca	98	39.722	Drosophila_melanogaster
ENSLBEG00000028971	rtca	95	52.738	ENSEBUG00000008556	rtca	96	52.738	Eptatretus_burgeri
ENSLBEG00000028971	rtca	99	69.529	ENSEASG00005015926	RTCA	99	69.529	Equus_asinus_asinus
ENSLBEG00000028971	rtca	99	69.529	ENSECAG00000019831	RTCA	99	69.529	Equus_caballus
ENSLBEG00000028971	rtca	90	63.050	ENSEEUG00000001165	RTCA	99	63.050	Erinaceus_europaeus
ENSLBEG00000028971	rtca	100	79.890	ENSELUG00000003741	rtca	100	79.890	Esox_lucius
ENSLBEG00000028971	rtca	99	69.806	ENSFCAG00000024460	RTCA	99	69.806	Felis_catus
ENSLBEG00000028971	rtca	91	67.868	ENSFALG00000002443	RTCA	90	67.868	Ficedula_albicollis
ENSLBEG00000028971	rtca	98	55.125	ENSFDAG00000016084	-	99	55.125	Fukomys_damarensis
ENSLBEG00000028971	rtca	99	68.144	ENSFDAG00000012070	-	99	68.144	Fukomys_damarensis
ENSLBEG00000028971	rtca	71	73.930	ENSFHEG00000002868	rtca	92	81.395	Fundulus_heteroclitus
ENSLBEG00000028971	rtca	99	80.886	ENSGMOG00000013264	rtca	99	80.886	Gadus_morhua
ENSLBEG00000028971	rtca	99	66.667	ENSGALG00000005277	RTCA	99	66.667	Gallus_gallus
ENSLBEG00000028971	rtca	99	87.535	ENSGAFG00000011853	rtca	99	87.535	Gambusia_affinis
ENSLBEG00000028971	rtca	100	87.637	ENSGACG00000013497	rtca	100	87.637	Gasterosteus_aculeatus
ENSLBEG00000028971	rtca	79	67.014	ENSGAGG00000023306	RTCA	98	67.014	Gopherus_agassizii
ENSLBEG00000028971	rtca	99	68.144	ENSGGOG00000044018	-	99	68.144	Gorilla_gorilla
ENSLBEG00000028971	rtca	99	68.698	ENSGGOG00000009546	-	99	68.698	Gorilla_gorilla
ENSLBEG00000028971	rtca	99	87.778	ENSHBUG00000002114	rtca	98	87.778	Haplochromis_burtoni
ENSLBEG00000028971	rtca	99	68.421	ENSHGLG00000002617	RTCA	99	68.421	Heterocephalus_glaber_female
ENSLBEG00000028971	rtca	99	68.421	ENSHGLG00100006056	RTCA	99	68.421	Heterocephalus_glaber_male
ENSLBEG00000028971	rtca	100	76.374	ENSHCOG00000020628	rtca	89	76.374	Hippocampus_comes
ENSLBEG00000028971	rtca	99	77.562	ENSIPUG00000024803	rtca	99	77.562	Ictalurus_punctatus
ENSLBEG00000028971	rtca	99	61.219	ENSSTOG00000033099	-	99	61.219	Ictidomys_tridecemlineatus
ENSLBEG00000028971	rtca	99	65.374	ENSSTOG00000013528	-	99	65.374	Ictidomys_tridecemlineatus
ENSLBEG00000028971	rtca	99	52.222	ENSJJAG00000016178	Rtca	98	52.222	Jaculus_jaculus
ENSLBEG00000028971	rtca	99	87.500	ENSKMAG00000006651	rtca	98	87.500	Kryptolebias_marmoratus
ENSLBEG00000028971	rtca	99	67.218	ENSLACG00000013666	RTCA	99	67.218	Latimeria_chalumnae
ENSLBEG00000028971	rtca	98	78.212	ENSLOCG00000000093	rtca	98	78.212	Lepisosteus_oculatus
ENSLBEG00000028971	rtca	99	68.698	ENSLAFG00000001473	RTCA	99	68.698	Loxodonta_africana
ENSLBEG00000028971	rtca	99	69.252	ENSMFAG00000034132	RTCA	99	69.252	Macaca_fascicularis
ENSLBEG00000028971	rtca	99	69.252	ENSMMUG00000019105	RTCA	99	69.252	Macaca_mulatta
ENSLBEG00000028971	rtca	85	68.285	ENSMNEG00000037163	RTCA	100	68.285	Macaca_nemestrina
ENSLBEG00000028971	rtca	99	57.341	ENSMLEG00000042151	RTCA	98	57.341	Mandrillus_leucophaeus
ENSLBEG00000028971	rtca	99	88.920	ENSMAMG00000016536	rtca	99	88.920	Mastacembelus_armatus
ENSLBEG00000028971	rtca	99	88.056	ENSMZEG00005017945	rtca	98	88.056	Maylandia_zebra
ENSLBEG00000028971	rtca	87	66.667	ENSMGAG00000006892	RTCA	99	66.667	Meleagris_gallopavo
ENSLBEG00000028971	rtca	99	70.637	ENSMAUG00000008488	Rtca	99	70.637	Mesocricetus_auratus
ENSLBEG00000028971	rtca	85	69.256	ENSMICG00000008643	RTCA	100	69.256	Microcebus_murinus
ENSLBEG00000028971	rtca	99	70.083	ENSMOCG00000016660	Rtca	99	70.083	Microtus_ochrogaster
ENSLBEG00000028971	rtca	85	89.251	ENSMMOG00000007750	rtca	100	89.251	Mola_mola
ENSLBEG00000028971	rtca	99	70.637	ENSMODG00000003557	RTCA	99	70.637	Monodelphis_domestica
ENSLBEG00000028971	rtca	99	88.366	ENSMALG00000020844	rtca	99	88.366	Monopterus_albus
ENSLBEG00000028971	rtca	99	68.975	MGP_CAROLIEiJ_G0025565	Rtca	99	68.975	Mus_caroli
ENSLBEG00000028971	rtca	99	68.698	ENSMUSG00000000339	Rtca	99	68.698	Mus_musculus
ENSLBEG00000028971	rtca	99	68.975	MGP_PahariEiJ_G0027011	Rtca	99	68.975	Mus_pahari
ENSLBEG00000028971	rtca	99	69.252	MGP_SPRETEiJ_G0026515	Rtca	100	68.310	Mus_spretus
ENSLBEG00000028971	rtca	99	69.806	ENSMPUG00000012119	RTCA	99	69.806	Mustela_putorius_furo
ENSLBEG00000028971	rtca	99	66.022	ENSMLUG00000009922	RTCA	99	66.022	Myotis_lucifugus
ENSLBEG00000028971	rtca	99	69.231	ENSNGAG00000011540	Rtca	99	69.231	Nannospalax_galili
ENSLBEG00000028971	rtca	99	88.333	ENSNBRG00000003062	rtca	98	88.333	Neolamprologus_brichardi
ENSLBEG00000028971	rtca	99	68.975	ENSNLEG00000031426	RTCA	99	68.975	Nomascus_leucogenys
ENSLBEG00000028971	rtca	74	65.428	ENSOPRG00000012092	RTCA	71	65.428	Ochotona_princeps
ENSLBEG00000028971	rtca	95	69.253	ENSODEG00000006990	RTCA	96	69.516	Octodon_degus
ENSLBEG00000028971	rtca	99	88.056	ENSONIG00000007753	rtca	98	88.056	Oreochromis_niloticus
ENSLBEG00000028971	rtca	87	69.716	ENSOANG00000012055	RTCA	98	69.716	Ornithorhynchus_anatinus
ENSLBEG00000028971	rtca	99	69.529	ENSOCUG00000014247	RTCA	99	69.529	Oryctolagus_cuniculus
ENSLBEG00000028971	rtca	99	88.366	ENSORLG00000013605	rtca	99	88.366	Oryzias_latipes
ENSLBEG00000028971	rtca	99	88.643	ENSORLG00020001904	rtca	99	88.643	Oryzias_latipes_hni
ENSLBEG00000028971	rtca	100	88.736	ENSORLG00015021064	rtca	100	88.736	Oryzias_latipes_hsok
ENSLBEG00000028971	rtca	99	86.427	ENSOMEG00000000756	rtca	99	86.427	Oryzias_melastigma
ENSLBEG00000028971	rtca	99	63.712	ENSOGAG00000005627	RTCA	99	63.712	Otolemur_garnettii
ENSLBEG00000028971	rtca	87	69.182	ENSOARG00000018122	RTCA	100	69.182	Ovis_aries
ENSLBEG00000028971	rtca	99	66.310	ENSPPAG00000035119	RTCA	100	67.638	Pan_paniscus
ENSLBEG00000028971	rtca	99	70.083	ENSPPRG00000000350	RTCA	99	70.083	Panthera_pardus
ENSLBEG00000028971	rtca	99	69.529	ENSPTIG00000012816	RTCA	99	69.529	Panthera_tigris_altaica
ENSLBEG00000028971	rtca	99	66.310	ENSPTRG00000001004	RTCA	100	67.638	Pan_troglodytes
ENSLBEG00000028971	rtca	99	69.146	ENSPANG00000000346	RTCA	99	69.146	Papio_anubis
ENSLBEG00000028971	rtca	99	80.886	ENSPKIG00000001653	rtca	99	80.886	Paramormyrops_kingsleyae
ENSLBEG00000028971	rtca	99	65.833	ENSPSIG00000011408	RTCA	99	65.833	Pelodiscus_sinensis
ENSLBEG00000028971	rtca	99	70.083	ENSPEMG00000018582	Rtca	99	70.083	Peromyscus_maniculatus_bairdii
ENSLBEG00000028971	rtca	99	55.402	ENSPMAG00000009110	rtca	98	55.402	Petromyzon_marinus
ENSLBEG00000028971	rtca	99	70.637	ENSPCIG00000007684	RTCA	99	70.637	Phascolarctos_cinereus
ENSLBEG00000028971	rtca	99	87.293	ENSPFOG00000004824	rtca	99	87.293	Poecilia_formosa
ENSLBEG00000028971	rtca	100	87.363	ENSPLAG00000011753	rtca	99	87.363	Poecilia_latipinna
ENSLBEG00000028971	rtca	100	87.363	ENSPMEG00000020469	rtca	99	87.363	Poecilia_mexicana
ENSLBEG00000028971	rtca	99	86.427	ENSPREG00000001365	rtca	99	86.427	Poecilia_reticulata
ENSLBEG00000028971	rtca	99	69.252	ENSPPYG00000001115	RTCA	99	69.252	Pongo_abelii
ENSLBEG00000028971	rtca	99	66.205	ENSPCAG00000005076	RTCA	99	66.205	Procavia_capensis
ENSLBEG00000028971	rtca	99	69.806	ENSPCOG00000005603	RTCA	99	69.806	Propithecus_coquereli
ENSLBEG00000028971	rtca	99	66.310	ENSPVAG00000009478	RTCA	99	66.310	Pteropus_vampyrus
ENSLBEG00000028971	rtca	99	88.056	ENSPNYG00000004722	rtca	98	88.056	Pundamilia_nyererei
ENSLBEG00000028971	rtca	99	80.168	ENSPNAG00000022270	rtca	98	80.168	Pygocentrus_nattereri
ENSLBEG00000028971	rtca	99	68.698	ENSRNOG00000014575	Rtca	99	68.698	Rattus_norvegicus
ENSLBEG00000028971	rtca	99	66.310	ENSRBIG00000041180	RTCA	100	67.638	Rhinopithecus_bieti
ENSLBEG00000028971	rtca	99	68.698	ENSRROG00000024929	RTCA	99	68.698	Rhinopithecus_roxellana
ENSLBEG00000028971	rtca	99	69.252	ENSSBOG00000028626	RTCA	99	69.252	Saimiri_boliviensis_boliviensis
ENSLBEG00000028971	rtca	99	70.360	ENSSHAG00000001758	RTCA	99	70.360	Sarcophilus_harrisii
ENSLBEG00000028971	rtca	99	86.704	ENSSMAG00000014680	rtca	98	86.704	Scophthalmus_maximus
ENSLBEG00000028971	rtca	99	90.223	ENSSDUG00000015585	rtca	98	89.751	Seriola_dumerili
ENSLBEG00000028971	rtca	96	91.117	ENSSLDG00000018985	rtca	95	91.117	Seriola_lalandi_dorsalis
ENSLBEG00000028971	rtca	87	64.984	ENSSARG00000013993	RTCA	100	64.984	Sorex_araneus
ENSLBEG00000028971	rtca	99	87.812	ENSSPAG00000011938	rtca	99	87.812	Stegastes_partitus
ENSLBEG00000028971	rtca	99	69.806	ENSSSCG00000006865	RTCA	99	69.806	Sus_scrofa
ENSLBEG00000028971	rtca	99	67.778	ENSTGUG00000005154	RTCA	99	67.778	Taeniopygia_guttata
ENSLBEG00000028971	rtca	99	88.643	ENSTRUG00000008799	rtca	99	88.643	Takifugu_rubripes
ENSLBEG00000028971	rtca	100	87.637	ENSTNIG00000004725	rtca	100	87.637	Tetraodon_nigroviridis
ENSLBEG00000028971	rtca	58	56.190	ENSTBEG00000000943	RTCA	59	56.190	Tupaia_belangeri
ENSLBEG00000028971	rtca	99	67.112	ENSTTRG00000015327	RTCA	99	67.112	Tursiops_truncatus
ENSLBEG00000028971	rtca	93	69.231	ENSUAMG00000017265	RTCA	95	69.231	Ursus_americanus
ENSLBEG00000028971	rtca	99	69.252	ENSUMAG00000007881	RTCA	99	69.252	Ursus_maritimus
ENSLBEG00000028971	rtca	87	61.514	ENSVPAG00000001039	RTCA	84	61.514	Vicugna_pacos
ENSLBEG00000028971	rtca	99	69.252	ENSVVUG00000022041	RTCA	67	69.252	Vulpes_vulpes
ENSLBEG00000028971	rtca	98	58.449	ENSXETG00000031661	RTCA	98	58.449	Xenopus_tropicalis
ENSLBEG00000028971	rtca	99	75.623	ENSXCOG00000008002	rtca	99	75.623	Xiphophorus_couchianus
ENSLBEG00000028971	rtca	99	87.258	ENSXMAG00000005482	rtca	99	87.258	Xiphophorus_maculatus