EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000000465 (Gene tree)
Gene ID: 102688752
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 5627 bases
Position: chrAHAT01042401.1:22569-28195
Accession: 102688752
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000000554	HVSL	PF09749.9	3.9e-64	1	1
ENSLOCP00000000507	HVSL	PF09749.9	4.7e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000000508	-	979	XM_006643371	ENSLOCP00000000507	299 (aa)	XP_015195303	W5LWK0
ENSLOCT00000000555	-	928	-	ENSLOCP00000000554	282 (aa)	-	W5LWP7

Gene Model

Click here to download ENSLOCG00000000465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000000465's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000000465	usb1	85	54.357	ENSG00000103005	USB1	100	55.607	Homo_sapiens
ENSLOCG00000000465	usb1	99	50.865	ENSAPOG00000011942	usb1	95	52.060	Acanthochromis_polyacanthus
ENSLOCG00000000465	usb1	87	54.694	ENSAMEG00000017205	USB1	94	53.571	Ailuropoda_melanoleuca
ENSLOCG00000000465	usb1	79	57.589	ENSACIG00000012234	usb1	82	57.589	Amphilophus_citrinellus
ENSLOCG00000000465	usb1	99	52.297	ENSAOCG00000014831	usb1	99	51.890	Amphiprion_ocellaris
ENSLOCG00000000465	usb1	99	52.650	ENSAPEG00000000296	usb1	99	52.234	Amphiprion_percula
ENSLOCG00000000465	usb1	100	52.650	ENSATEG00000009348	usb1	99	52.128	Anabas_testudineus
ENSLOCG00000000465	usb1	79	60.619	ENSAPLG00000002756	USB1	100	61.062	Anas_platyrhynchos
ENSLOCG00000000465	usb1	82	55.794	ENSACAG00000015481	USB1	99	56.637	Anolis_carolinensis
ENSLOCG00000000465	usb1	85	53.909	ENSANAG00000035640	USB1	95	52.918	Aotus_nancymaae
ENSLOCG00000000465	usb1	92	54.054	ENSACLG00000020586	usb1	99	53.169	Astatotilapia_calliptera
ENSLOCG00000000465	usb1	80	60.352	ENSAMXG00000040146	usb1	75	60.352	Astyanax_mexicanus
ENSLOCG00000000465	usb1	99	50.526	ENSBTAG00000015758	USB1	95	53.307	Bos_taurus
ENSLOCG00000000465	usb1	85	54.772	ENSCJAG00000011733	USB1	95	53.725	Callithrix_jacchus
ENSLOCG00000000465	usb1	81	56.769	ENSCAFG00000008556	USB1	68	53.125	Canis_familiaris
ENSLOCG00000000465	usb1	99	50.714	ENSCAFG00020009263	USB1	86	56.769	Canis_lupus_dingo
ENSLOCG00000000465	usb1	99	51.246	ENSCHIG00000024290	USB1	95	53.307	Capra_hircus
ENSLOCG00000000465	usb1	87	52.800	ENSTSYG00000006997	USB1	95	52.529	Carlito_syrichta
ENSLOCG00000000465	usb1	79	45.982	ENSCAPG00000009057	USB1	96	45.982	Cavia_aperea
ENSLOCG00000000465	usb1	99	49.117	ENSCPOG00000014325	USB1	92	52.846	Cavia_porcellus
ENSLOCG00000000465	usb1	85	54.321	ENSCCAG00000022132	USB1	95	53.307	Cebus_capucinus
ENSLOCG00000000465	usb1	88	54.217	ENSCATG00000032174	USB1	95	53.360	Cercocebus_atys
ENSLOCG00000000465	usb1	61	54.335	ENSCLAG00000007363	USB1	98	54.335	Chinchilla_lanigera
ENSLOCG00000000465	usb1	85	55.187	ENSCSAG00000004783	USB1	95	53.725	Chlorocebus_sabaeus
ENSLOCG00000000465	usb1	99	50.671	ENSCPBG00000026943	USB1	98	49.673	Chrysemys_picta_bellii
ENSLOCG00000000465	usb1	82	56.957	ENSCANG00000037135	USB1	96	53.755	Colobus_angolensis_palliatus
ENSLOCG00000000465	usb1	99	51.418	ENSCGRG00001011243	USB1	88	54.545	Cricetulus_griseus_chok1gshd
ENSLOCG00000000465	usb1	99	51.418	ENSCGRG00000013252	USB1	88	54.545	Cricetulus_griseus_crigri
ENSLOCG00000000465	usb1	99	52.313	ENSCSEG00000013881	usb1	99	52.313	Cynoglossus_semilaevis
ENSLOCG00000000465	usb1	80	53.275	ENSCVAG00000009252	usb1	98	53.275	Cyprinodon_variegatus
ENSLOCG00000000465	usb1	79	57.143	ENSDARG00000003841	usb1	81	57.143	Danio_rerio
ENSLOCG00000000465	usb1	82	56.957	ENSDORG00000001888	Usb1	95	53.755	Dipodomys_ordii
ENSLOCG00000000465	usb1	74	39.713	FBgn0037713	CG16790	79	39.713	Drosophila_melanogaster
ENSLOCG00000000465	usb1	99	44.561	ENSETEG00000019682	USB1	94	46.640	Echinops_telfairi
ENSLOCG00000000465	usb1	79	49.123	ENSEBUG00000005889	usb1	79	48.908	Eptatretus_burgeri
ENSLOCG00000000465	usb1	99	51.408	ENSEASG00005005484	USB1	89	55.372	Equus_asinus_asinus
ENSLOCG00000000465	usb1	99	51.590	ENSECAG00000019493	USB1	81	55.602	Equus_caballus
ENSLOCG00000000465	usb1	61	48.555	ENSEEUG00000000154	USB1	65	48.555	Erinaceus_europaeus
ENSLOCG00000000465	usb1	100	48.344	ENSELUG00000010974	usb1	87	54.357	Esox_lucius
ENSLOCG00000000465	usb1	88	53.846	ENSFCAG00000002693	USB1	94	53.200	Felis_catus
ENSLOCG00000000465	usb1	82	58.261	ENSFALG00000006876	USB1	97	53.817	Ficedula_albicollis
ENSLOCG00000000465	usb1	99	50.534	ENSFDAG00000010052	USB1	94	52.778	Fukomys_damarensis
ENSLOCG00000000465	usb1	89	49.430	ENSFHEG00000012334	usb1	92	52.542	Fundulus_heteroclitus
ENSLOCG00000000465	usb1	79	59.193	ENSGMOG00000004228	usb1	99	59.193	Gadus_morhua
ENSLOCG00000000465	usb1	79	59.375	ENSGALG00000035604	USB1	88	59.556	Gallus_gallus
ENSLOCG00000000465	usb1	100	51.761	ENSGAFG00000021890	usb1	95	53.558	Gambusia_affinis
ENSLOCG00000000465	usb1	99	49.296	ENSGACG00000003257	usb1	99	49.296	Gasterosteus_aculeatus
ENSLOCG00000000465	usb1	99	53.169	ENSGAGG00000022572	USB1	93	54.864	Gopherus_agassizii
ENSLOCG00000000465	usb1	85	54.772	ENSGGOG00000017147	USB1	95	53.725	Gorilla_gorilla
ENSLOCG00000000465	usb1	90	54.331	ENSHBUG00000009823	usb1	99	53.004	Haplochromis_burtoni
ENSLOCG00000000465	usb1	99	49.291	ENSHGLG00000016078	USB1	93	50.196	Heterocephalus_glaber_female
ENSLOCG00000000465	usb1	99	49.291	ENSHGLG00100005562	USB1	93	50.196	Heterocephalus_glaber_male
ENSLOCG00000000465	usb1	77	59.174	ENSHCOG00000015633	usb1	97	55.378	Hippocampus_comes
ENSLOCG00000000465	usb1	100	53.333	ENSIPUG00000008601	usb1	100	53.000	Ictalurus_punctatus
ENSLOCG00000000465	usb1	87	55.918	ENSSTOG00000007548	USB1	88	55.918	Ictidomys_tridecemlineatus
ENSLOCG00000000465	usb1	99	51.957	ENSJJAG00000021859	Usb1	94	54.118	Jaculus_jaculus
ENSLOCG00000000465	usb1	88	52.344	ENSKMAG00000007200	usb1	99	51.389	Kryptolebias_marmoratus
ENSLOCG00000000465	usb1	82	49.398	ENSLBEG00000008452	usb1	85	47.059	Labrus_bergylta
ENSLOCG00000000465	usb1	76	56.481	ENSLACG00000000105	USB1	75	56.944	Latimeria_chalumnae
ENSLOCG00000000465	usb1	99	42.123	ENSLAFG00000002267	USB1	92	44.922	Loxodonta_africana
ENSLOCG00000000465	usb1	88	53.815	ENSMFAG00000003926	USB1	95	53.360	Macaca_fascicularis
ENSLOCG00000000465	usb1	88	53.815	ENSMMUG00000022669	USB1	95	53.360	Macaca_mulatta
ENSLOCG00000000465	usb1	88	53.414	ENSMNEG00000042487	USB1	95	52.964	Macaca_nemestrina
ENSLOCG00000000465	usb1	88	53.815	ENSMLEG00000028756	USB1	95	53.360	Mandrillus_leucophaeus
ENSLOCG00000000465	usb1	99	51.246	ENSMAMG00000015092	usb1	80	58.482	Mastacembelus_armatus
ENSLOCG00000000465	usb1	92	54.054	ENSMZEG00005010008	usb1	99	53.901	Maylandia_zebra
ENSLOCG00000000465	usb1	99	51.246	ENSMAUG00000007832	Usb1	96	52.490	Mesocricetus_auratus
ENSLOCG00000000465	usb1	82	56.957	ENSMICG00000004900	USB1	95	54.651	Microcebus_murinus
ENSLOCG00000000465	usb1	99	50.877	ENSMOCG00000022647	Usb1	96	53.696	Microtus_ochrogaster
ENSLOCG00000000465	usb1	79	56.250	ENSMMOG00000000490	usb1	98	53.516	Mola_mola
ENSLOCG00000000465	usb1	77	54.587	ENSMODG00000014067	USB1	94	50.988	Monodelphis_domestica
ENSLOCG00000000465	usb1	99	50.530	ENSMALG00000005930	usb1	99	50.530	Monopterus_albus
ENSLOCG00000000465	usb1	99	51.601	MGP_CAROLIEiJ_G0031421	Usb1	100	53.097	Mus_caroli
ENSLOCG00000000465	usb1	99	51.246	ENSMUSG00000031792	Usb1	100	52.212	Mus_musculus
ENSLOCG00000000465	usb1	99	48.993	MGP_PahariEiJ_G0023019	Usb1	100	53.846	Mus_pahari
ENSLOCG00000000465	usb1	99	51.246	MGP_SPRETEiJ_G0032540	Usb1	96	52.529	Mus_spretus
ENSLOCG00000000465	usb1	87	55.510	ENSMPUG00000004684	USB1	90	54.183	Mustela_putorius_furo
ENSLOCG00000000465	usb1	82	56.087	ENSMLUG00000007400	USB1	99	56.087	Myotis_lucifugus
ENSLOCG00000000465	usb1	87	54.065	ENSNGAG00000009703	Usb1	93	53.012	Nannospalax_galili
ENSLOCG00000000465	usb1	90	51.172	ENSNBRG00000008747	usb1	99	57.746	Neolamprologus_brichardi
ENSLOCG00000000465	usb1	79	53.778	ENSNLEG00000003340	USB1	95	52.720	Nomascus_leucogenys
ENSLOCG00000000465	usb1	99	51.601	ENSODEG00000016214	USB1	93	53.150	Octodon_degus
ENSLOCG00000000465	usb1	99	53.737	ENSONIG00000011063	usb1	99	53.737	Oreochromis_niloticus
ENSLOCG00000000465	usb1	79	56.140	ENSOANG00000012118	USB1	94	56.140	Ornithorhynchus_anatinus
ENSLOCG00000000465	usb1	79	57.589	ENSORLG00000012479	usb1	99	50.178	Oryzias_latipes
ENSLOCG00000000465	usb1	79	58.036	ENSORLG00020018671	usb1	82	58.036	Oryzias_latipes_hni
ENSLOCG00000000465	usb1	79	57.589	ENSORLG00015009679	usb1	83	57.589	Oryzias_latipes_hsok
ENSLOCG00000000465	usb1	83	55.144	ENSOMEG00000012930	usb1	93	53.101	Oryzias_melastigma
ENSLOCG00000000465	usb1	87	50.813	ENSOGAG00000003273	USB1	95	50.593	Otolemur_garnettii
ENSLOCG00000000465	usb1	87	55.510	ENSOARG00000001107	USB1	99	53.053	Ovis_aries
ENSLOCG00000000465	usb1	85	53.942	ENSPPAG00000042137	USB1	95	52.941	Pan_paniscus
ENSLOCG00000000465	usb1	88	53.846	ENSPPRG00000024797	USB1	94	53.200	Panthera_pardus
ENSLOCG00000000465	usb1	88	53.036	ENSPTIG00000007506	USB1	94	52.988	Panthera_tigris_altaica
ENSLOCG00000000465	usb1	82	51.739	ENSPTRG00000008172	USB1	100	55.607	Pan_troglodytes
ENSLOCG00000000465	usb1	88	53.815	ENSPANG00000025138	USB1	95	53.360	Papio_anubis
ENSLOCG00000000465	usb1	99	52.805	ENSPKIG00000015109	usb1	99	52.273	Paramormyrops_kingsleyae
ENSLOCG00000000465	usb1	79	45.148	ENSPSIG00000004305	USB1	100	45.148	Pelodiscus_sinensis
ENSLOCG00000000465	usb1	79	54.018	ENSPMGG00000017725	usb1	86	54.018	Periophthalmus_magnuspinnatus
ENSLOCG00000000465	usb1	99	51.418	ENSPEMG00000016183	Usb1	96	51.527	Peromyscus_maniculatus_bairdii
ENSLOCG00000000465	usb1	80	48.458	ENSPMAG00000000462	usb1	96	48.458	Petromyzon_marinus
ENSLOCG00000000465	usb1	100	50.169	ENSPFOG00000011130	usb1	99	48.718	Poecilia_formosa
ENSLOCG00000000465	usb1	100	49.831	ENSPLAG00000009820	usb1	99	48.397	Poecilia_latipinna
ENSLOCG00000000465	usb1	100	51.761	ENSPMEG00000006402	usb1	99	47.756	Poecilia_mexicana
ENSLOCG00000000465	usb1	89	52.381	ENSPREG00000001047	usb1	99	48.214	Poecilia_reticulata
ENSLOCG00000000465	usb1	80	50.439	ENSPPYG00000007401	USB1	95	49.587	Pongo_abelii
ENSLOCG00000000465	usb1	85	55.187	ENSPCOG00000022612	USB1	95	53.755	Propithecus_coquereli
ENSLOCG00000000465	usb1	99	49.110	ENSPVAG00000004613	USB1	95	51.383	Pteropus_vampyrus
ENSLOCG00000000465	usb1	99	53.710	ENSPNYG00000022262	usb1	99	53.710	Pundamilia_nyererei
ENSLOCG00000000465	usb1	90	56.917	ENSPNAG00000011736	usb1	84	56.917	Pygocentrus_nattereri
ENSLOCG00000000465	usb1	99	51.957	ENSRNOG00000013216	Usb1	96	53.696	Rattus_norvegicus
ENSLOCG00000000465	usb1	82	52.609	ENSRBIG00000044466	USB1	100	56.542	Rhinopithecus_bieti
ENSLOCG00000000465	usb1	82	56.522	ENSRROG00000029211	USB1	95	53.360	Rhinopithecus_roxellana
ENSLOCG00000000465	usb1	85	55.144	ENSSBOG00000029362	USB1	95	54.086	Saimiri_boliviensis_boliviensis
ENSLOCG00000000465	usb1	77	52.752	ENSSHAG00000006993	USB1	93	51.837	Sarcophilus_harrisii
ENSLOCG00000000465	usb1	99	53.872	ENSSFOG00015023663	usb1	70	64.286	Scleropages_formosus
ENSLOCG00000000465	usb1	79	55.042	ENSSMAG00000015834	usb1	80	55.042	Scophthalmus_maximus
ENSLOCG00000000465	usb1	79	58.482	ENSSDUG00000002949	usb1	83	58.482	Seriola_dumerili
ENSLOCG00000000465	usb1	79	58.482	ENSSLDG00000014174	usb1	80	58.482	Seriola_lalandi_dorsalis
ENSLOCG00000000465	usb1	76	57.009	ENSSPUG00000006741	USB1	100	57.009	Sphenodon_punctatus
ENSLOCG00000000465	usb1	99	50.508	ENSSPAG00000007484	usb1	99	50.853	Stegastes_partitus
ENSLOCG00000000465	usb1	99	52.313	ENSSSCG00000002807	USB1	98	49.329	Sus_scrofa
ENSLOCG00000000465	usb1	74	61.244	ENSTGUG00000004792	USB1	94	54.724	Taeniopygia_guttata
ENSLOCG00000000465	usb1	100	50.355	ENSTRUG00000021069	usb1	99	50.355	Takifugu_rubripes
ENSLOCG00000000465	usb1	100	45.486	ENSTNIG00000000626	usb1	90	48.963	Tetraodon_nigroviridis
ENSLOCG00000000465	usb1	82	40.435	ENSTBEG00000001507	USB1	99	40.435	Tupaia_belangeri
ENSLOCG00000000465	usb1	87	55.102	ENSUAMG00000016823	USB1	93	53.815	Ursus_americanus
ENSLOCG00000000465	usb1	76	56.075	ENSUMAG00000021369	USB1	100	56.075	Ursus_maritimus
ENSLOCG00000000465	usb1	87	53.968	ENSVVUG00000023700	USB1	95	53.968	Vulpes_vulpes
ENSLOCG00000000465	usb1	77	57.798	ENSXETG00000013795	usb1	95	56.118	Xenopus_tropicalis
ENSLOCG00000000465	usb1	93	48.582	ENSXMAG00000024687	usb1	78	52.985	Xiphophorus_maculatus