EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000000715 (Gene tree)
Gene ID: 102682329
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 26862 bases
Position: chrLG13:97797-124658
Accession: 102682329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000000835	RNA_bind	PF08675.11	5.5e-33	1	1
ENSLOCP00000000801	RNA_bind	PF08675.11	5.6e-33	1	1
ENSLOCP00000000835	CAF1	PF04857.20	1.5e-90	1	1
ENSLOCP00000000801	CAF1	PF04857.20	1.7e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000000839	-	2049	-	ENSLOCP00000000835	682 (aa)	-	W5LXH8
ENSLOCT00000000805	-	2166	XM_006636972	ENSLOCP00000000801	721 (aa)	XP_015215306	W5LXE4

Gene Model

Click here to download ENSLOCG00000000715's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000000715's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000000715	parn	87	73.684	ENSG00000140694	PARN	91	81.356	Homo_sapiens
ENSLOCG00000000715	parn	87	72.742	ENSAMEG00000011208	PARN	90	75.694	Ailuropoda_melanoleuca
ENSLOCG00000000715	parn	80	79.964	ENSACIG00000000619	parn	86	79.964	Amphilophus_citrinellus
ENSLOCG00000000715	parn	100	71.367	ENSAOCG00000003465	parn	100	71.367	Amphiprion_ocellaris
ENSLOCG00000000715	parn	73	79.762	ENSAPEG00000010661	parn	97	79.762	Amphiprion_percula
ENSLOCG00000000715	parn	100	71.429	ENSATEG00000004661	parn	100	71.429	Anabas_testudineus
ENSLOCG00000000715	parn	85	76.949	ENSAPLG00000013914	PARN	93	76.949	Anas_platyrhynchos
ENSLOCG00000000715	parn	84	77.015	ENSACAG00000004973	PARN	91	76.351	Anolis_carolinensis
ENSLOCG00000000715	parn	87	74.422	ENSANAG00000031516	PARN	96	81.356	Aotus_nancymaae
ENSLOCG00000000715	parn	100	72.635	ENSACLG00000004742	parn	100	72.595	Astatotilapia_calliptera
ENSLOCG00000000715	parn	100	69.400	ENSAMXG00000012390	parn	93	77.153	Astyanax_mexicanus
ENSLOCG00000000715	parn	85	72.109	ENSBTAG00000018097	PARN	91	74.383	Bos_taurus
ENSLOCG00000000715	parn	87	74.257	ENSCJAG00000015866	PARN	96	81.356	Callithrix_jacchus
ENSLOCG00000000715	parn	85	73.980	ENSCAFG00000018795	PARN	92	73.980	Canis_familiaris
ENSLOCG00000000715	parn	85	74.320	ENSCAFG00020024126	PARN	92	74.320	Canis_lupus_dingo
ENSLOCG00000000715	parn	51	30.447	ENSCAFG00020017742	PNLDC1	97	30.447	Canis_lupus_dingo
ENSLOCG00000000715	parn	85	75.000	ENSCHIG00000018143	PARN	92	75.000	Capra_hircus
ENSLOCG00000000715	parn	70	52.846	ENSCAPG00000007984	PARN	79	52.846	Cavia_aperea
ENSLOCG00000000715	parn	85	74.660	ENSCPOG00000002263	PARN	92	75.000	Cavia_porcellus
ENSLOCG00000000715	parn	87	74.257	ENSCCAG00000030367	PARN	96	81.356	Cebus_capucinus
ENSLOCG00000000715	parn	78	80.791	ENSCATG00000041368	PARN	95	80.791	Cercocebus_atys
ENSLOCG00000000715	parn	85	75.510	ENSCLAG00000015406	PARN	92	75.680	Chinchilla_lanigera
ENSLOCG00000000715	parn	87	73.762	ENSCSAG00000008142	PARN	97	72.019	Chlorocebus_sabaeus
ENSLOCG00000000715	parn	84	58.348	ENSCHOG00000007014	PARN	92	58.348	Choloepus_hoffmanni
ENSLOCG00000000715	parn	75	78.053	ENSCPBG00000006609	PARN	91	78.244	Chrysemys_picta_bellii
ENSLOCG00000000715	parn	75	43.315	ENSCING00000010142	-	99	43.315	Ciona_intestinalis
ENSLOCG00000000715	parn	87	63.489	ENSCANG00000028849	-	96	81.356	Colobus_angolensis_palliatus
ENSLOCG00000000715	parn	85	74.742	ENSCGRG00001012096	Parn	92	74.742	Cricetulus_griseus_chok1gshd
ENSLOCG00000000715	parn	85	74.742	ENSCGRG00000004939	Parn	92	74.742	Cricetulus_griseus_crigri
ENSLOCG00000000715	parn	100	69.297	ENSCSEG00000002064	parn	100	69.683	Cynoglossus_semilaevis
ENSLOCG00000000715	parn	100	68.892	ENSCVAG00000014848	parn	100	69.440	Cyprinodon_variegatus
ENSLOCG00000000715	parn	100	64.740	ENSDARG00000102634	parn	100	74.545	Danio_rerio
ENSLOCG00000000715	parn	85	75.170	ENSDNOG00000000833	PARN	97	78.467	Dasypus_novemcinctus
ENSLOCG00000000715	parn	61	75.665	ENSETEG00000014828	-	69	75.665	Echinops_telfairi
ENSLOCG00000000715	parn	69	30.185	ENSEBUG00000008118	PNLDC1	86	30.185	Eptatretus_burgeri
ENSLOCG00000000715	parn	83	75.910	ENSEASG00005011400	PARN	90	75.910	Equus_asinus_asinus
ENSLOCG00000000715	parn	83	75.563	ENSECAG00000017792	PARN	90	75.563	Equus_caballus
ENSLOCG00000000715	parn	76	64.706	ENSEEUG00000010370	PARN	79	64.706	Erinaceus_europaeus
ENSLOCG00000000715	parn	100	70.546	ENSELUG00000013139	parn	90	70.216	Esox_lucius
ENSLOCG00000000715	parn	85	74.660	ENSFCAG00000044961	PARN	89	79.661	Felis_catus
ENSLOCG00000000715	parn	84	77.969	ENSFALG00000003911	PARN	90	78.141	Ficedula_albicollis
ENSLOCG00000000715	parn	85	74.871	ENSFDAG00000009234	PARN	92	75.130	Fukomys_damarensis
ENSLOCG00000000715	parn	88	70.909	ENSFHEG00000013738	parn	92	83.051	Fundulus_heteroclitus
ENSLOCG00000000715	parn	80	79.385	ENSGMOG00000003231	parn	99	79.385	Gadus_morhua
ENSLOCG00000000715	parn	99	74.074	ENSGALG00000003091	PARN	93	76.351	Gallus_gallus
ENSLOCG00000000715	parn	100	69.054	ENSGAFG00000011061	parn	100	69.054	Gambusia_affinis
ENSLOCG00000000715	parn	85	76.976	ENSGACG00000019501	parn	95	75.793	Gasterosteus_aculeatus
ENSLOCG00000000715	parn	87	73.684	ENSGGOG00000025224	PARN	93	81.356	Gorilla_gorilla
ENSLOCG00000000715	parn	100	72.635	ENSHBUG00000017906	parn	93	80.000	Haplochromis_burtoni
ENSLOCG00000000715	parn	89	72.123	ENSHGLG00000010886	PARN	97	72.123	Heterocephalus_glaber_female
ENSLOCG00000000715	parn	89	72.123	ENSHGLG00100014659	PARN	97	72.123	Heterocephalus_glaber_male
ENSLOCG00000000715	parn	79	76.503	ENSHCOG00000008683	parn	94	76.503	Hippocampus_comes
ENSLOCG00000000715	parn	100	60.347	ENSIPUG00000012401	parn	100	59.483	Ictalurus_punctatus
ENSLOCG00000000715	parn	82	75.306	ENSSTOG00000007519	PARN	90	75.521	Ictidomys_tridecemlineatus
ENSLOCG00000000715	parn	85	74.048	ENSJJAG00000023049	Parn	92	74.567	Jaculus_jaculus
ENSLOCG00000000715	parn	100	69.044	ENSKMAG00000009462	parn	100	69.020	Kryptolebias_marmoratus
ENSLOCG00000000715	parn	84	80.174	ENSLBEG00000009167	parn	89	80.560	Labrus_bergylta
ENSLOCG00000000715	parn	74	77.579	ENSLACG00000004207	PARN	100	77.358	Latimeria_chalumnae
ENSLOCG00000000715	parn	86	75.462	ENSLAFG00000015036	PARN	99	71.495	Loxodonta_africana
ENSLOCG00000000715	parn	87	70.462	ENSMFAG00000044852	PARN	96	81.356	Macaca_fascicularis
ENSLOCG00000000715	parn	87	73.597	ENSMMUG00000018849	PARN	96	81.356	Macaca_mulatta
ENSLOCG00000000715	parn	87	73.762	ENSMNEG00000045108	PARN	96	81.356	Macaca_nemestrina
ENSLOCG00000000715	parn	87	73.762	ENSMLEG00000031743	PARN	96	81.356	Mandrillus_leucophaeus
ENSLOCG00000000715	parn	100	69.900	ENSMAMG00000006939	parn	100	71.019	Mastacembelus_armatus
ENSLOCG00000000715	parn	100	72.489	ENSMZEG00005013590	parn	93	80.144	Maylandia_zebra
ENSLOCG00000000715	parn	84	75.172	ENSMGAG00000001004	PARN	90	76.182	Meleagris_gallopavo
ENSLOCG00000000715	parn	85	68.814	ENSMAUG00000008025	Parn	92	68.814	Mesocricetus_auratus
ENSLOCG00000000715	parn	85	76.361	ENSMICG00000016053	PARN	91	79.661	Microcebus_murinus
ENSLOCG00000000715	parn	72	80.162	ENSMOCG00000022211	Parn	100	80.162	Microtus_ochrogaster
ENSLOCG00000000715	parn	80	78.623	ENSMMOG00000011333	parn	90	78.623	Mola_mola
ENSLOCG00000000715	parn	72	82.258	ENSMODG00000004915	PARN	99	82.258	Monodelphis_domestica
ENSLOCG00000000715	parn	96	68.889	ENSMALG00000019426	parn	93	80.944	Monopterus_albus
ENSLOCG00000000715	parn	85	74.355	MGP_CAROLIEiJ_G0020466	Parn	92	74.570	Mus_caroli
ENSLOCG00000000715	parn	85	74.182	ENSMUSG00000022685	Parn	100	79.268	Mus_musculus
ENSLOCG00000000715	parn	85	74.527	MGP_PahariEiJ_G0016172	Parn	92	74.527	Mus_pahari
ENSLOCG00000000715	parn	87	72.287	MGP_SPRETEiJ_G0021361	Parn	95	72.621	Mus_spretus
ENSLOCG00000000715	parn	87	73.102	ENSMPUG00000014464	PARN	97	71.383	Mustela_putorius_furo
ENSLOCG00000000715	parn	72	80.567	ENSMLUG00000005414	PARN	100	80.567	Myotis_lucifugus
ENSLOCG00000000715	parn	80	80.254	ENSNBRG00000006805	parn	93	80.254	Neolamprologus_brichardi
ENSLOCG00000000715	parn	87	73.684	ENSNLEG00000010241	PARN	91	81.356	Nomascus_leucogenys
ENSLOCG00000000715	parn	77	57.634	ENSMEUG00000008178	-	87	56.022	Notamacropus_eugenii
ENSLOCG00000000715	parn	84	70.224	ENSOPRG00000012187	PARN	92	70.568	Ochotona_princeps
ENSLOCG00000000715	parn	85	69.535	ENSODEG00000001617	PARN	92	70.017	Octodon_degus
ENSLOCG00000000715	parn	100	72.780	ENSONIG00000000151	parn	100	72.780	Oreochromis_niloticus
ENSLOCG00000000715	parn	84	75.430	ENSOCUG00000000322	PARN	92	75.773	Oryctolagus_cuniculus
ENSLOCG00000000715	parn	100	69.913	ENSORLG00020010313	parn	100	70.494	Oryzias_latipes_hni
ENSLOCG00000000715	parn	100	69.767	ENSORLG00015000300	parn	100	70.349	Oryzias_latipes_hsok
ENSLOCG00000000715	parn	100	70.912	ENSOMEG00000019555	parn	100	69.628	Oryzias_melastigma
ENSLOCG00000000715	parn	72	78.990	ENSOGAG00000014626	PARN	100	78.990	Otolemur_garnettii
ENSLOCG00000000715	parn	72	81.377	ENSOARG00000007574	PARN	100	81.377	Ovis_aries
ENSLOCG00000000715	parn	87	73.849	ENSPPAG00000031438	PARN	91	81.356	Pan_paniscus
ENSLOCG00000000715	parn	85	74.660	ENSPPRG00000018583	PARN	89	79.661	Panthera_pardus
ENSLOCG00000000715	parn	85	74.660	ENSPTIG00000012135	PARN	89	79.661	Panthera_tigris_altaica
ENSLOCG00000000715	parn	87	73.520	ENSPTRG00000007792	PARN	91	81.356	Pan_troglodytes
ENSLOCG00000000715	parn	87	70.957	ENSPANG00000020099	PARN	96	81.356	Papio_anubis
ENSLOCG00000000715	parn	97	76.214	ENSPKIG00000022807	parn	94	77.667	Paramormyrops_kingsleyae
ENSLOCG00000000715	parn	87	76.000	ENSPSIG00000014804	PARN	94	76.000	Pelodiscus_sinensis
ENSLOCG00000000715	parn	80	77.256	ENSPMGG00000014431	parn	78	77.540	Periophthalmus_magnuspinnatus
ENSLOCG00000000715	parn	85	72.556	ENSPEMG00000018439	Parn	92	72.556	Peromyscus_maniculatus_bairdii
ENSLOCG00000000715	parn	76	68.269	ENSPMAG00000003956	parn	99	68.269	Petromyzon_marinus
ENSLOCG00000000715	parn	62	74.473	ENSPCIG00000001259	PARN	91	79.661	Phascolarctos_cinereus
ENSLOCG00000000715	parn	100	68.436	ENSPFOG00000012823	parn	100	68.580	Poecilia_formosa
ENSLOCG00000000715	parn	100	68.580	ENSPLAG00000006395	parn	100	68.723	Poecilia_latipinna
ENSLOCG00000000715	parn	100	68.436	ENSPMEG00000007711	parn	100	68.580	Poecilia_mexicana
ENSLOCG00000000715	parn	100	68.723	ENSPREG00000000147	parn	100	68.867	Poecilia_reticulata
ENSLOCG00000000715	parn	87	73.115	ENSPPYG00000007123	PARN	92	74.746	Pongo_abelii
ENSLOCG00000000715	parn	82	65.905	ENSPCAG00000001741	PARN	94	65.905	Procavia_capensis
ENSLOCG00000000715	parn	85	73.469	ENSPCOG00000019292	PARN	91	79.661	Propithecus_coquereli
ENSLOCG00000000715	parn	84	71.945	ENSPVAG00000002547	PARN	92	71.945	Pteropus_vampyrus
ENSLOCG00000000715	parn	100	72.595	ENSPNYG00000006835	parn	100	71.965	Pundamilia_nyererei
ENSLOCG00000000715	parn	93	67.812	ENSPNAG00000018905	parn	100	67.913	Pygocentrus_nattereri
ENSLOCG00000000715	parn	84	75.304	ENSRNOG00000002912	Parn	96	82.474	Rattus_norvegicus
ENSLOCG00000000715	parn	87	72.442	ENSSBOG00000034726	PARN	96	81.356	Saimiri_boliviensis_boliviensis
ENSLOCG00000000715	parn	61	81.295	ENSSHAG00000008493	PARN	93	81.295	Sarcophilus_harrisii
ENSLOCG00000000715	parn	100	74.017	ENSSFOG00015014165	parn	99	78.325	Scleropages_formosus
ENSLOCG00000000715	parn	100	68.265	ENSSMAG00000000685	parn	100	69.460	Scophthalmus_maximus
ENSLOCG00000000715	parn	100	71.490	ENSSDUG00000014555	parn	100	71.490	Seriola_dumerili
ENSLOCG00000000715	parn	64	82.488	ENSSARG00000014339	PARN	75	82.488	Sorex_araneus
ENSLOCG00000000715	parn	94	78.462	ENSSPUG00000007719	PARN	100	78.462	Sphenodon_punctatus
ENSLOCG00000000715	parn	100	71.884	ENSSPAG00000007095	parn	100	72.029	Stegastes_partitus
ENSLOCG00000000715	parn	85	75.000	ENSSSCG00000007878	PARN	82	75.000	Sus_scrofa
ENSLOCG00000000715	parn	84	77.491	ENSTGUG00000004971	PARN	91	77.663	Taeniopygia_guttata
ENSLOCG00000000715	parn	87	76.721	ENSTNIG00000008252	parn	99	76.045	Tetraodon_nigroviridis
ENSLOCG00000000715	parn	76	62.571	ENSTBEG00000010407	PARN	91	62.970	Tupaia_belangeri
ENSLOCG00000000715	parn	84	69.880	ENSTTRG00000002843	PARN	92	69.880	Tursiops_truncatus
ENSLOCG00000000715	parn	66	68.889	ENSUAMG00000008283	PARN	94	66.972	Ursus_americanus
ENSLOCG00000000715	parn	87	73.520	ENSUMAG00000004527	PARN	97	71.632	Ursus_maritimus
ENSLOCG00000000715	parn	84	72.461	ENSVPAG00000008968	PARN	95	72.774	Vicugna_pacos
ENSLOCG00000000715	parn	85	74.320	ENSVVUG00000019509	PARN	92	74.320	Vulpes_vulpes
ENSLOCG00000000715	parn	99	72.408	ENSXETG00000010994	parn	100	80.228	Xenopus_tropicalis
ENSLOCG00000000715	parn	83	74.956	ENSXCOG00000015990	parn	99	74.194	Xiphophorus_couchianus
ENSLOCG00000000715	parn	100	69.684	ENSXMAG00000014783	parn	100	69.397	Xiphophorus_maculatus