EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000001442 (Gene tree)
Gene ID: 102694509
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 6748 bases
Position: chrLG18:1920529-1927276
Accession: 102694509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000001644	RRM_1	PF00076.22	9.3e-32	1	2
ENSLOCP00000001644	RRM_1	PF00076.22	9.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000001649	-	3394	XM_006639397	ENSLOCP00000001644	369 (aa)	XP_015220146	W5LZT7

Gene Model

Click here to download ENSLOCG00000001442's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000001442's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000001442	-	53	42.029	ENSLOCG00000005994	srsf1a	78	41.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000001442	-	54	71.859	ENSACIG00000018649	srsf4	90	71.654	Amphilophus_citrinellus
ENSLOCG00000001442	-	98	50.970	ENSACLG00000003395	srsf4	60	83.562	Astatotilapia_calliptera
ENSLOCG00000001442	-	66	65.164	ENSAMXG00000034811	srsf4	72	76.712	Astyanax_mexicanus
ENSLOCG00000001442	-	67	50.996	ENSCSEG00000010058	srsf4	75	73.228	Cynoglossus_semilaevis
ENSLOCG00000001442	-	50	70.213	ENSDARG00000105293	srsf4	68	76.389	Danio_rerio
ENSLOCG00000001442	-	54	58.586	ENSEBUG00000005588	srsf4	50	57.436	Eptatretus_burgeri
ENSLOCG00000001442	-	59	55.310	ENSEBUG00000001681	srsf4	67	60.221	Eptatretus_burgeri
ENSLOCG00000001442	-	73	52.288	ENSELUG00000017551	srsf4	93	63.846	Esox_lucius
ENSLOCG00000001442	-	50	75.410	ENSFHEG00000007472	srsf4	78	82.192	Fundulus_heteroclitus
ENSLOCG00000001442	-	50	73.224	ENSGMOG00000012906	srsf4	56	71.823	Gadus_morhua
ENSLOCG00000001442	-	50	80.435	ENSGAFG00000018496	srsf4	64	67.956	Gambusia_affinis
ENSLOCG00000001442	-	50	77.596	ENSGACG00000002389	srsf4	55	74.033	Gasterosteus_aculeatus
ENSLOCG00000001442	-	93	67.246	ENSHBUG00000011326	-	50	88.950	Haplochromis_burtoni
ENSLOCG00000001442	-	80	81.818	ENSHCOG00000012540	srsf4	67	75.138	Hippocampus_comes
ENSLOCG00000001442	-	86	57.143	ENSKMAG00000013631	srsf4	80	65.072	Kryptolebias_marmoratus
ENSLOCG00000001442	-	50	82.609	ENSLAFG00000002575	SRSF4	51	69.604	Loxodonta_africana
ENSLOCG00000001442	-	60	78.261	ENSMAMG00000004888	srsf4	67	75.138	Mastacembelus_armatus
ENSLOCG00000001442	-	98	50.970	ENSMZEG00005026275	srsf4	60	83.562	Maylandia_zebra
ENSLOCG00000001442	-	86	56.587	ENSMMOG00000013653	srsf4	64	70.718	Mola_mola
ENSLOCG00000001442	-	98	60.769	ENSMODG00000011052	SRSF4	54	77.901	Monodelphis_domestica
ENSLOCG00000001442	-	50	78.142	ENSMALG00000013392	srsf4	65	74.586	Monopterus_albus
ENSLOCG00000001442	-	50	79.459	ENSNLEG00000030787	-	61	74.586	Nomascus_leucogenys
ENSLOCG00000001442	-	50	75.956	ENSORLG00020016052	srsf4	65	76.796	Oryzias_latipes_hni
ENSLOCG00000001442	-	50	75.956	ENSORLG00015007566	srsf4	69	76.796	Oryzias_latipes_hsok
ENSLOCG00000001442	-	54	47.500	ENSOARG00000017944	-	59	37.619	Ovis_aries
ENSLOCG00000001442	-	78	58.804	ENSPMGG00000013436	srsf4	95	74.016	Periophthalmus_magnuspinnatus
ENSLOCG00000001442	-	78	60.900	ENSPLAG00000008812	srsf4	63	66.851	Poecilia_latipinna
ENSLOCG00000001442	-	50	79.679	ENSPMEG00000023638	srsf4	52	75.138	Poecilia_mexicana
ENSLOCG00000001442	-	50	77.596	ENSPNYG00000003796	srsf4	55	77.901	Pundamilia_nyererei
ENSLOCG00000001442	-	96	52.528	ENSPNAG00000023844	srsf4	53	71.823	Pygocentrus_nattereri
ENSLOCG00000001442	-	75	59.928	ENSSDUG00000007387	srsf4	53	75.138	Seriola_dumerili
ENSLOCG00000001442	-	50	65.217	ENSSLDG00000009745	srsf4	60	63.187	Seriola_lalandi_dorsalis
ENSLOCG00000001442	-	61	71.121	ENSSPAG00000014538	srsf4	83	70.866	Stegastes_partitus
ENSLOCG00000001442	-	50	73.057	ENSTRUG00000011891	srsf4	61	73.016	Takifugu_rubripes
ENSLOCG00000001442	-	87	58.006	ENSXCOG00000018826	srsf4	89	71.667	Xiphophorus_couchianus
ENSLOCG00000001442	-	50	79.781	ENSXCOG00000003212	-	54	89.247	Xiphophorus_couchianus