EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000001629 (Gene tree)
Gene ID: 102695569
Gene Symbol: fam172a
Alias: si:dkey-172f14.1|zgc:64188
Full Name: family with sequence similarity 172 member A
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 181835 bases
Position: chrLG2:1443307-1625141
Accession: 102695569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000001879	Arb2	PF09757.9	8.6e-08	1	1
ENSLOCP00000001899	Arb2	PF09757.9	8.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000001904	-	1269	-	ENSLOCP00000001899	422 (aa)	-	W5M0J2
ENSLOCT00000001884	-	1370	XM_006626501	ENSLOCP00000001879	415 (aa)	XP_006626564	W5M0H2

Gene Model

Click here to download ENSLOCG00000001629's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000001629's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000001629	fam172a	97	77.037	ENSG00000113391	FAM172A	100	75.871	Homo_sapiens
ENSLOCG00000001629	fam172a	56	40.426	ENSAPLG00000011555	-	99	39.149	Anas_platyrhynchos
ENSLOCG00000001629	fam172a	98	77.859	ENSAPLG00000004055	FAM172A	98	77.129	Anas_platyrhynchos
ENSLOCG00000001629	fam172a	88	78.378	ENSACAG00000013305	FAM172A	96	78.108	Anolis_carolinensis
ENSLOCG00000001629	fam172a	88	71.351	ENSANAG00000035869	FAM172A	95	69.895	Aotus_nancymaae
ENSLOCG00000001629	fam172a	97	76.790	ENSBTAG00000050195	FAM172A	100	74.940	Bos_taurus
ENSLOCG00000001629	fam172a	97	77.037	ENSCJAG00000010444	FAM172A	100	75.179	Callithrix_jacchus
ENSLOCG00000001629	fam172a	85	78.933	ENSCAFG00000008064	FAM172A	99	76.757	Canis_familiaris
ENSLOCG00000001629	fam172a	97	76.296	ENSCAFG00020006210	FAM172A	100	74.463	Canis_lupus_dingo
ENSLOCG00000001629	fam172a	97	76.790	ENSCHIG00000008440	FAM172A	100	74.940	Capra_hircus
ENSLOCG00000001629	fam172a	64	74.812	ENSTSYG00000006286	FAM172A	85	73.684	Carlito_syrichta
ENSLOCG00000001629	fam172a	51	70.874	ENSCAPG00000014103	-	100	70.874	Cavia_aperea
ENSLOCG00000001629	fam172a	97	76.790	ENSCCAG00000023116	FAM172A	100	75.603	Cebus_capucinus
ENSLOCG00000001629	fam172a	88	76.757	ENSCLAG00000005472	FAM172A	95	76.757	Chinchilla_lanigera
ENSLOCG00000001629	fam172a	87	43.127	ENSCPBG00000004402	-	97	42.588	Chrysemys_picta_bellii
ENSLOCG00000001629	fam172a	65	75.556	ENSCANG00000040412	FAM172A	92	74.444	Colobus_angolensis_palliatus
ENSLOCG00000001629	fam172a	97	76.049	ENSDNOG00000004689	FAM172A	100	74.224	Dasypus_novemcinctus
ENSLOCG00000001629	fam172a	65	75.185	ENSDORG00000013558	Fam172a	88	74.074	Dipodomys_ordii
ENSLOCG00000001629	fam172a	80	40.000	ENSEBUG00000016097	-	62	39.697	Eptatretus_burgeri
ENSLOCG00000001629	fam172a	97	73.827	ENSECAG00000018274	FAM172A	98	75.339	Equus_caballus
ENSLOCG00000001629	fam172a	96	65.261	ENSEEUG00000002887	FAM172A	100	63.723	Erinaceus_europaeus
ENSLOCG00000001629	fam172a	98	75.245	ENSELUG00000017647	fam172a	97	75.490	Esox_lucius
ENSLOCG00000001629	fam172a	97	76.049	ENSFCAG00000025443	FAM172A	100	74.224	Felis_catus
ENSLOCG00000001629	fam172a	87	79.614	ENSFALG00000009072	FAM172A	98	78.788	Ficedula_albicollis
ENSLOCG00000001629	fam172a	85	43.343	ENSFALG00000006501	-	97	42.493	Ficedula_albicollis
ENSLOCG00000001629	fam172a	98	77.561	ENSGALG00000014661	FAM172A	98	76.829	Gallus_gallus
ENSLOCG00000001629	fam172a	85	44.225	ENSGAGG00000022828	-	94	43.662	Gopherus_agassizii
ENSLOCG00000001629	fam172a	100	77.566	ENSGAGG00000003839	FAM172A	100	76.850	Gopherus_agassizii
ENSLOCG00000001629	fam172a	97	77.037	ENSGGOG00000010296	FAM172A	100	75.179	Gorilla_gorilla
ENSLOCG00000001629	fam172a	97	75.309	ENSHGLG00000011178	FAM172A	100	73.508	Heterocephalus_glaber_female
ENSLOCG00000001629	fam172a	85	78.310	ENSHGLG00100013340	FAM172A	99	76.152	Heterocephalus_glaber_male
ENSLOCG00000001629	fam172a	97	76.543	ENSSTOG00000009918	FAM172A	100	74.702	Ictidomys_tridecemlineatus
ENSLOCG00000001629	fam172a	86	48.732	ENSLACG00000001532	si:ch73-41e3.7	95	48.169	Latimeria_chalumnae
ENSLOCG00000001629	fam172a	65	75.556	ENSMFAG00000001171	FAM172A	92	74.444	Macaca_fascicularis
ENSLOCG00000001629	fam172a	92	77.344	ENSMNEG00000039938	FAM172A	92	74.444	Macaca_nemestrina
ENSLOCG00000001629	fam172a	100	75.895	ENSMICG00000030403	FAM172A	100	75.179	Microcebus_murinus
ENSLOCG00000001629	fam172a	89	75.603	ENSMOCG00000003613	Fam172a	100	74.799	Microtus_ochrogaster
ENSLOCG00000001629	fam172a	100	74.702	ENSMODG00000020131	FAM172A	100	74.702	Monodelphis_domestica
ENSLOCG00000001629	fam172a	89	52.279	MGP_PahariEiJ_G0015818	Fam172a	100	52.279	Mus_pahari
ENSLOCG00000001629	fam172a	89	76.408	ENSNGAG00000019570	Fam172a	100	75.603	Nannospalax_galili
ENSLOCG00000001629	fam172a	65	75.556	ENSNLEG00000013903	FAM172A	89	74.444	Nomascus_leucogenys
ENSLOCG00000001629	fam172a	86	77.624	ENSOANG00000011068	FAM172A	97	77.624	Ornithorhynchus_anatinus
ENSLOCG00000001629	fam172a	94	76.590	ENSOCUG00000007299	FAM172A	97	74.693	Oryctolagus_cuniculus
ENSLOCG00000001629	fam172a	97	75.556	ENSOGAG00000015189	FAM172A	100	73.747	Otolemur_garnettii
ENSLOCG00000001629	fam172a	87	76.839	ENSOARG00000016711	FAM172A	87	75.000	Ovis_aries
ENSLOCG00000001629	fam172a	65	75.185	ENSPPAG00000030542	FAM172A	92	74.074	Pan_paniscus
ENSLOCG00000001629	fam172a	97	76.049	ENSPPRG00000006653	FAM172A	100	74.224	Panthera_pardus
ENSLOCG00000001629	fam172a	97	76.049	ENSPTIG00000012681	FAM172A	100	74.224	Panthera_tigris_altaica
ENSLOCG00000001629	fam172a	65	75.185	ENSPTRG00000017074	FAM172A	92	74.074	Pan_troglodytes
ENSLOCG00000001629	fam172a	65	75.556	ENSPANG00000011687	FAM172A	92	74.444	Papio_anubis
ENSLOCG00000001629	fam172a	97	80.893	ENSPKIG00000012314	fam172a	98	86.170	Paramormyrops_kingsleyae
ENSLOCG00000001629	fam172a	100	74.463	ENSPEMG00000009604	-	100	74.463	Peromyscus_maniculatus_bairdii
ENSLOCG00000001629	fam172a	98	75.669	ENSPCIG00000028612	FAM172A	98	75.795	Phascolarctos_cinereus
ENSLOCG00000001629	fam172a	55	71.552	ENSPCOG00000024072	FAM172A	93	70.259	Propithecus_coquereli
ENSLOCG00000001629	fam172a	64	73.606	ENSRNOG00000013844	Fam172a	99	72.491	Rattus_norvegicus
ENSLOCG00000001629	fam172a	65	75.556	ENSRROG00000023807	FAM172A	92	74.444	Rhinopithecus_roxellana
ENSLOCG00000001629	fam172a	97	77.284	ENSSBOG00000019860	FAM172A	100	75.418	Saimiri_boliviensis_boliviensis
ENSLOCG00000001629	fam172a	100	74.224	ENSSHAG00000013743	FAM172A	100	74.224	Sarcophilus_harrisii
ENSLOCG00000001629	fam172a	98	77.129	ENSSPUG00000008161	FAM172A	98	76.399	Sphenodon_punctatus
ENSLOCG00000001629	fam172a	100	75.179	ENSSSCG00000027608	FAM172A	100	75.603	Sus_scrofa
ENSLOCG00000001629	fam172a	92	78.329	ENSTGUG00000000715	FAM172A	100	77.546	Taeniopygia_guttata
ENSLOCG00000001629	fam172a	80	43.155	ENSTGUG00000013623	-	100	42.730	Taeniopygia_guttata
ENSLOCG00000001629	fam172a	79	62.651	ENSTNIG00000009902	fam172a	100	63.554	Tetraodon_nigroviridis
ENSLOCG00000001629	fam172a	100	72.554	ENSTTRG00000001521	FAM172A	100	71.838	Tursiops_truncatus
ENSLOCG00000001629	fam172a	97	76.543	ENSUMAG00000005442	FAM172A	99	76.486	Ursus_maritimus
ENSLOCG00000001629	fam172a	97	76.296	ENSVVUG00000022112	FAM172A	98	76.882	Vulpes_vulpes
ENSLOCG00000001629	fam172a	91	42.895	ENSXETG00000033027	-	99	42.895	Xenopus_tropicalis
ENSLOCG00000001629	fam172a	98	74.576	ENSXETG00000011592	fam172a	97	74.757	Xenopus_tropicalis