EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000001641 (Gene tree)
Gene ID: 102685875
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 32319 bases
Position: chrLG12:3003250-3035568
Accession: 102685875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000001912	R3H	PF01424.22	7.2e-13	1	1
ENSLOCP00000001896	R3H	PF01424.22	7.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000001901	-	6510	XM_006636232	ENSLOCP00000001896	1121 (aa)	XP_015213838	W5M0I9
ENSLOCT00000001917	-	6423	-	ENSLOCP00000001912	1092 (aa)	-	W5M0K5

Gene Model

Click here to download ENSLOCG00000001641's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000001641's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000001641	r3hdm1	89	56.250	ENSLOCG00000005976	r3hdm2	93	57.072
ENSLOCG00000001641	r3hdm1	66	53.918	ENSLOCG00000004751	ARPP21	90	54.096

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000001641	r3hdm1	100	66.815	ENSG00000048991	R3HDM1	87	82.432	Homo_sapiens
ENSLOCG00000001641	r3hdm1	90	52.170	ENSAPOG00000020850	r3hdm1	97	50.914	Acanthochromis_polyacanthus
ENSLOCG00000001641	r3hdm1	100	66.430	ENSAMEG00000014886	R3HDM1	100	67.052	Ailuropoda_melanoleuca
ENSLOCG00000001641	r3hdm1	90	51.756	ENSAOCG00000005192	r3hdm1	99	51.019	Amphiprion_ocellaris
ENSLOCG00000001641	r3hdm1	90	49.954	ENSAPEG00000016108	r3hdm1	99	49.307	Amphiprion_percula
ENSLOCG00000001641	r3hdm1	90	48.213	ENSATEG00000000232	r3hdm1	99	48.646	Anabas_testudineus
ENSLOCG00000001641	r3hdm1	100	69.272	ENSAPLG00000015231	R3HDM1	100	69.569	Anas_platyrhynchos
ENSLOCG00000001641	r3hdm1	100	67.273	ENSACAG00000001676	R3HDM1	100	67.532	Anolis_carolinensis
ENSLOCG00000001641	r3hdm1	100	66.133	ENSANAG00000035334	R3HDM1	100	65.466	Aotus_nancymaae
ENSLOCG00000001641	r3hdm1	89	49.372	ENSACLG00000027282	r3hdm1	99	48.693	Astatotilapia_calliptera
ENSLOCG00000001641	r3hdm1	93	79.567	ENSAMXG00000012861	R3HDM1	100	79.277	Astyanax_mexicanus
ENSLOCG00000001641	r3hdm1	66	39.453	ENSAMXG00000020587	arpp21	84	57.317	Astyanax_mexicanus
ENSLOCG00000001641	r3hdm1	89	71.850	ENSAMXG00000003536	r3hdm1	94	71.774	Astyanax_mexicanus
ENSLOCG00000001641	r3hdm1	100	66.580	ENSBTAG00000013302	R3HDM1	100	67.100	Bos_taurus
ENSLOCG00000001641	r3hdm1	100	65.806	ENSCJAG00000011718	R3HDM1	100	65.141	Callithrix_jacchus
ENSLOCG00000001641	r3hdm1	100	66.252	ENSCAFG00000005075	R3HDM1	100	66.874	Canis_familiaris
ENSLOCG00000001641	r3hdm1	100	66.207	ENSCAFG00020016119	R3HDM1	94	74.237	Canis_lupus_dingo
ENSLOCG00000001641	r3hdm1	100	66.845	ENSCHIG00000020851	R3HDM1	100	67.113	Capra_hircus
ENSLOCG00000001641	r3hdm1	100	64.458	ENSCPOG00000012784	R3HDM1	99	68.421	Cavia_porcellus
ENSLOCG00000001641	r3hdm1	100	66.014	ENSCCAG00000027199	R3HDM1	100	65.347	Cebus_capucinus
ENSLOCG00000001641	r3hdm1	99	75.143	ENSCATG00000023642	R3HDM1	100	68.523	Cercocebus_atys
ENSLOCG00000001641	r3hdm1	100	64.974	ENSCLAG00000007962	R3HDM1	99	71.053	Chinchilla_lanigera
ENSLOCG00000001641	r3hdm1	100	66.321	ENSCSAG00000016356	R3HDM1	100	66.122	Chlorocebus_sabaeus
ENSLOCG00000001641	r3hdm1	87	54.509	ENSCHOG00000013638	R3HDM1	85	61.326	Choloepus_hoffmanni
ENSLOCG00000001641	r3hdm1	92	67.360	ENSCPBG00000009645	R3HDM1	100	70.859	Chrysemys_picta_bellii
ENSLOCG00000001641	r3hdm1	100	66.133	ENSCANG00000034748	R3HDM1	100	66.195	Colobus_angolensis_palliatus
ENSLOCG00000001641	r3hdm1	99	66.119	ENSCGRG00001012357	R3hdm1	97	66.149	Cricetulus_griseus_chok1gshd
ENSLOCG00000001641	r3hdm1	100	66.236	ENSCGRG00000012080	R3hdm1	99	72.697	Cricetulus_griseus_crigri
ENSLOCG00000001641	r3hdm1	90	44.950	ENSCSEG00000008944	r3hdm1	99	45.599	Cynoglossus_semilaevis
ENSLOCG00000001641	r3hdm1	90	51.111	ENSCVAG00000007582	r3hdm1	99	50.742	Cyprinodon_variegatus
ENSLOCG00000001641	r3hdm1	68	46.111	ENSDARG00000061081	arpp21	93	45.799	Danio_rerio
ENSLOCG00000001641	r3hdm1	100	63.467	ENSDNOG00000000771	R3HDM1	100	64.089	Dasypus_novemcinctus
ENSLOCG00000001641	r3hdm1	100	60.125	ENSETEG00000013606	R3HDM1	100	60.214	Echinops_telfairi
ENSLOCG00000001641	r3hdm1	66	40.159	ENSEBUG00000014746	arpp21	98	41.860	Eptatretus_burgeri
ENSLOCG00000001641	r3hdm1	100	66.522	ENSEASG00005007392	R3HDM1	100	76.513	Equus_asinus_asinus
ENSLOCG00000001641	r3hdm1	100	66.408	ENSECAG00000019114	R3HDM1	100	66.815	Equus_caballus
ENSLOCG00000001641	r3hdm1	80	67.939	ENSEEUG00000012589	R3HDM1	74	67.939	Erinaceus_europaeus
ENSLOCG00000001641	r3hdm1	90	65.209	ENSELUG00000004909	R3HDM1	99	61.553	Esox_lucius
ENSLOCG00000001641	r3hdm1	93	56.908	ENSELUG00000014413	r3hdm1	100	57.587	Esox_lucius
ENSLOCG00000001641	r3hdm1	100	66.436	ENSFCAG00000027113	R3HDM1	100	76.513	Felis_catus
ENSLOCG00000001641	r3hdm1	100	64.630	ENSFDAG00000016478	R3HDM1	99	72.039	Fukomys_damarensis
ENSLOCG00000001641	r3hdm1	90	51.389	ENSFHEG00000018713	r3hdm1	99	50.928	Fundulus_heteroclitus
ENSLOCG00000001641	r3hdm1	62	70.539	ENSGMOG00000006042	-	82	67.625	Gadus_morhua
ENSLOCG00000001641	r3hdm1	83	75.399	ENSGALG00000012246	R3HDM1	99	73.718	Gallus_gallus
ENSLOCG00000001641	r3hdm1	79	53.011	ENSGAFG00000006203	r3hdm1	94	53.088	Gambusia_affinis
ENSLOCG00000001641	r3hdm1	87	51.625	ENSGACG00000014925	r3hdm1	99	51.635	Gasterosteus_aculeatus
ENSLOCG00000001641	r3hdm1	100	68.582	ENSGAGG00000007840	R3HDM1	95	75.750	Gopherus_agassizii
ENSLOCG00000001641	r3hdm1	100	66.815	ENSGGOG00000008156	R3HDM1	100	69.007	Gorilla_gorilla
ENSLOCG00000001641	r3hdm1	100	65.112	ENSHGLG00000015718	R3HDM1	99	69.408	Heterocephalus_glaber_female
ENSLOCG00000001641	r3hdm1	90	53.274	ENSHGLG00100015374	-	96	53.607	Heterocephalus_glaber_male
ENSLOCG00000001641	r3hdm1	100	65.026	ENSHGLG00100003184	-	99	69.408	Heterocephalus_glaber_male
ENSLOCG00000001641	r3hdm1	80	47.954	ENSHCOG00000013366	r3hdm1	87	61.750	Hippocampus_comes
ENSLOCG00000001641	r3hdm1	90	65.984	ENSIPUG00000001676	R3HDM1	99	73.621	Ictalurus_punctatus
ENSLOCG00000001641	r3hdm1	85	68.286	ENSIPUG00000013629	r3hdm1	94	71.028	Ictalurus_punctatus
ENSLOCG00000001641	r3hdm1	61	37.632	ENSIPUG00000020552	arpp21	89	40.456	Ictalurus_punctatus
ENSLOCG00000001641	r3hdm1	100	66.726	ENSSTOG00000007572	R3HDM1	99	72.368	Ictidomys_tridecemlineatus
ENSLOCG00000001641	r3hdm1	95	72.576	ENSLACG00000005334	R3HDM1	99	72.340	Latimeria_chalumnae
ENSLOCG00000001641	r3hdm1	100	66.523	ENSLAFG00000009065	R3HDM1	99	79.552	Loxodonta_africana
ENSLOCG00000001641	r3hdm1	100	66.370	ENSMFAG00000030331	R3HDM1	100	75.787	Macaca_fascicularis
ENSLOCG00000001641	r3hdm1	100	66.192	ENSMMUG00000009844	R3HDM1	100	69.007	Macaca_mulatta
ENSLOCG00000001641	r3hdm1	100	66.281	ENSMNEG00000027793	R3HDM1	100	75.787	Macaca_nemestrina
ENSLOCG00000001641	r3hdm1	100	66.370	ENSMLEG00000043189	R3HDM1	100	69.007	Mandrillus_leucophaeus
ENSLOCG00000001641	r3hdm1	90	51.763	ENSMAMG00000004532	r3hdm1	99	51.257	Mastacembelus_armatus
ENSLOCG00000001641	r3hdm1	90	50.973	ENSMZEG00005003157	r3hdm1	99	50.726	Maylandia_zebra
ENSLOCG00000001641	r3hdm1	100	68.795	ENSMGAG00000012461	R3HDM1	100	69.024	Meleagris_gallopavo
ENSLOCG00000001641	r3hdm1	100	65.979	ENSMAUG00000010315	R3hdm1	99	72.697	Mesocricetus_auratus
ENSLOCG00000001641	r3hdm1	96	49.441	ENSMICG00000042655	-	100	68.523	Microcebus_murinus
ENSLOCG00000001641	r3hdm1	100	65.160	ENSMICG00000005900	-	100	68.765	Microcebus_murinus
ENSLOCG00000001641	r3hdm1	91	65.974	ENSMODG00000000923	R3HDM1	97	66.446	Monodelphis_domestica
ENSLOCG00000001641	r3hdm1	99	49.444	ENSMALG00000009000	r3hdm1	98	50.134	Monopterus_albus
ENSLOCG00000001641	r3hdm1	100	66.437	MGP_CAROLIEiJ_G0014543	R3hdm1	99	72.697	Mus_caroli
ENSLOCG00000001641	r3hdm1	100	66.264	ENSMUSG00000056211	R3hdm1	99	72.697	Mus_musculus
ENSLOCG00000001641	r3hdm1	100	66.091	MGP_PahariEiJ_G0027779	R3hdm1	99	73.026	Mus_pahari
ENSLOCG00000001641	r3hdm1	100	66.178	MGP_SPRETEiJ_G0015350	R3hdm1	99	72.697	Mus_spretus
ENSLOCG00000001641	r3hdm1	100	66.103	ENSMPUG00000002412	R3HDM1	100	66.637	Mustela_putorius_furo
ENSLOCG00000001641	r3hdm1	100	66.165	ENSMLUG00000013824	R3HDM1	100	66.019	Myotis_lucifugus
ENSLOCG00000001641	r3hdm1	100	66.548	ENSNLEG00000008622	R3HDM1	100	66.608	Nomascus_leucogenys
ENSLOCG00000001641	r3hdm1	85	67.729	ENSMEUG00000011784	R3HDM1	94	67.331	Notamacropus_eugenii
ENSLOCG00000001641	r3hdm1	100	64.397	ENSODEG00000008607	R3HDM1	99	71.711	Octodon_degus
ENSLOCG00000001641	r3hdm1	94	50.820	ENSONIG00000012017	r3hdm1	99	51.095	Oreochromis_niloticus
ENSLOCG00000001641	r3hdm1	100	66.039	ENSOANG00000007987	R3HDM1	100	66.607	Ornithorhynchus_anatinus
ENSLOCG00000001641	r3hdm1	90	66.301	ENSOCUG00000017366	R3HDM1	98	66.932	Oryctolagus_cuniculus
ENSLOCG00000001641	r3hdm1	90	48.221	ENSORLG00000004297	r3hdm1	99	49.079	Oryzias_latipes
ENSLOCG00000001641	r3hdm1	90	48.505	ENSORLG00015017355	r3hdm1	99	49.509	Oryzias_latipes_hsok
ENSLOCG00000001641	r3hdm1	100	65.806	ENSOGAG00000003136	R3HDM1	100	66.103	Otolemur_garnettii
ENSLOCG00000001641	r3hdm1	100	66.995	ENSOARG00000010788	R3HDM1	100	67.263	Ovis_aries
ENSLOCG00000001641	r3hdm1	100	66.696	ENSPPAG00000027858	R3HDM1	100	66.992	Pan_paniscus
ENSLOCG00000001641	r3hdm1	100	66.310	ENSPPRG00000002626	R3HDM1	100	69.492	Panthera_pardus
ENSLOCG00000001641	r3hdm1	100	66.399	ENSPTIG00000016581	R3HDM1	100	69.734	Panthera_tigris_altaica
ENSLOCG00000001641	r3hdm1	100	66.607	ENSPTRG00000012494	R3HDM1	100	66.903	Pan_troglodytes
ENSLOCG00000001641	r3hdm1	100	66.281	ENSPANG00000026448	R3HDM1	100	69.007	Papio_anubis
ENSLOCG00000001641	r3hdm1	94	76.790	ENSPKIG00000004328	r3hdm1	95	77.387	Paramormyrops_kingsleyae
ENSLOCG00000001641	r3hdm1	100	67.504	ENSPSIG00000012915	R3HDM1	100	68.072	Pelodiscus_sinensis
ENSLOCG00000001641	r3hdm1	100	66.091	ENSPEMG00000015187	R3hdm1	99	72.368	Peromyscus_maniculatus_bairdii
ENSLOCG00000001641	r3hdm1	88	45.733	ENSPMAG00000003369	-	99	46.590	Petromyzon_marinus
ENSLOCG00000001641	r3hdm1	100	67.389	ENSPCIG00000002491	R3HDM1	100	76.145	Phascolarctos_cinereus
ENSLOCG00000001641	r3hdm1	90	51.351	ENSPFOG00000015036	r3hdm1	99	50.794	Poecilia_formosa
ENSLOCG00000001641	r3hdm1	79	53.304	ENSPLAG00000018042	r3hdm1	94	52.877	Poecilia_latipinna
ENSLOCG00000001641	r3hdm1	79	53.024	ENSPMEG00000023947	r3hdm1	94	52.597	Poecilia_mexicana
ENSLOCG00000001641	r3hdm1	90	51.068	ENSPREG00000007902	r3hdm1	93	62.281	Poecilia_reticulata
ENSLOCG00000001641	r3hdm1	100	65.956	ENSPPYG00000012815	R3HDM1	100	66.018	Pongo_abelii
ENSLOCG00000001641	r3hdm1	95	64.439	ENSPCAG00000006208	R3HDM1	89	72.997	Procavia_capensis
ENSLOCG00000001641	r3hdm1	100	63.588	ENSPCOG00000012698	R3HDM1	100	64.064	Propithecus_coquereli
ENSLOCG00000001641	r3hdm1	100	59.450	ENSPVAG00000006098	R3HDM1	100	59.805	Pteropus_vampyrus
ENSLOCG00000001641	r3hdm1	83	80.635	ENSPNAG00000005436	R3HDM1	99	78.662	Pygocentrus_nattereri
ENSLOCG00000001641	r3hdm1	51	56.400	ENSPNAG00000004162	arpp21	92	46.721	Pygocentrus_nattereri
ENSLOCG00000001641	r3hdm1	100	59.469	ENSPNAG00000013952	r3hdm1	95	72.900	Pygocentrus_nattereri
ENSLOCG00000001641	r3hdm1	100	65.630	ENSRNOG00000004099	R3hdm1	100	65.746	Rattus_norvegicus
ENSLOCG00000001641	r3hdm1	100	65.009	ENSRBIG00000033317	R3HDM1	100	67.341	Rhinopithecus_bieti
ENSLOCG00000001641	r3hdm1	100	65.956	ENSRROG00000034534	R3HDM1	100	65.988	Rhinopithecus_roxellana
ENSLOCG00000001641	r3hdm1	100	66.281	ENSSBOG00000020389	R3HDM1	100	65.611	Saimiri_boliviensis_boliviensis
ENSLOCG00000001641	r3hdm1	100	67.325	ENSSHAG00000016999	R3HDM1	100	67.864	Sarcophilus_harrisii
ENSLOCG00000001641	r3hdm1	100	64.209	ENSSFOG00015019851	-	100	65.014	Scleropages_formosus
ENSLOCG00000001641	r3hdm1	100	70.547	ENSSFOG00015014134	r3hdm1	100	70.099	Scleropages_formosus
ENSLOCG00000001641	r3hdm1	99	48.151	ENSSMAG00000001669	r3hdm1	99	48.151	Scophthalmus_maximus
ENSLOCG00000001641	r3hdm1	90	49.171	ENSSDUG00000010749	r3hdm1	99	50.476	Seriola_dumerili
ENSLOCG00000001641	r3hdm1	99	51.045	ENSSLDG00000004499	r3hdm1	99	50.789	Seriola_lalandi_dorsalis
ENSLOCG00000001641	r3hdm1	64	64.474	ENSSARG00000000352	-	64	64.474	Sorex_araneus
ENSLOCG00000001641	r3hdm1	100	69.452	ENSSPUG00000004167	R3HDM1	100	69.659	Sphenodon_punctatus
ENSLOCG00000001641	r3hdm1	89	52.381	ENSSPAG00000004648	r3hdm1	100	51.805	Stegastes_partitus
ENSLOCG00000001641	r3hdm1	100	66.429	ENSSSCG00000015692	R3HDM1	100	66.963	Sus_scrofa
ENSLOCG00000001641	r3hdm1	100	67.058	ENSTGUG00000011750	R3HDM1	100	67.238	Taeniopygia_guttata
ENSLOCG00000001641	r3hdm1	80	49.389	ENSTRUG00000011654	r3hdm1	93	49.184	Takifugu_rubripes
ENSLOCG00000001641	r3hdm1	87	49.848	ENSTNIG00000010362	r3hdm1	99	49.036	Tetraodon_nigroviridis
ENSLOCG00000001641	r3hdm1	100	62.411	ENSTTRG00000003935	R3HDM1	100	63.036	Tursiops_truncatus
ENSLOCG00000001641	r3hdm1	70	67.636	ENSUAMG00000024806	R3HDM1	94	74.761	Ursus_americanus
ENSLOCG00000001641	r3hdm1	100	63.523	ENSUMAG00000005552	R3HDM1	100	69.734	Ursus_maritimus
ENSLOCG00000001641	r3hdm1	92	64.315	ENSVPAG00000007333	R3HDM1	88	64.826	Vicugna_pacos
ENSLOCG00000001641	r3hdm1	100	66.264	ENSVVUG00000006457	R3HDM1	100	69.734	Vulpes_vulpes
ENSLOCG00000001641	r3hdm1	90	62.900	ENSXETG00000019330	r3hdm1	100	63.100	Xenopus_tropicalis
ENSLOCG00000001641	r3hdm1	64	54.447	ENSXCOG00000017448	r3hdm1	89	53.552	Xiphophorus_couchianus
ENSLOCG00000001641	r3hdm1	90	51.439	ENSXMAG00000007885	r3hdm1	99	51.253	Xiphophorus_maculatus