EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000001749 (Gene tree)
Gene ID: 107078327
Gene Symbol: swt1
Alias: si:dkeyp-11g8.2|si:dkeyp-11g8.4|wu:fb81g09
Full Name: SWT1%2C RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 39214 bases
Position: chrLG10:695301-734514
Accession: 107078327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000002031	PIN_4	PF13638.6	2.1e-30	1	1
ENSLOCP00000002043	PIN_4	PF13638.6	2.2e-30	1	1
ENSLOCP00000002016	PIN_4	PF13638.6	3.2e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000002021	-	2919	-	ENSLOCP00000002016	935 (aa)	XP_015210545	W5M0V9
ENSLOCT00000002048	-	1614	-	ENSLOCP00000002043	538 (aa)	-	W5M0Y6
ENSLOCT00000002036	-	1572	-	ENSLOCP00000002031	523 (aa)	-	W5M0X4

Gene Model

Click here to download ENSLOCG00000001749's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000001749's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000001749	swt1	98	41.558	ENSG00000116668	SWT1	58	42.674	Homo_sapiens
ENSLOCG00000001749	swt1	97	41.230	ENSAPOG00000014897	-	58	42.393	Acanthochromis_polyacanthus
ENSLOCG00000001749	swt1	98	41.621	ENSAMEG00000013585	SWT1	60	42.266	Ailuropoda_melanoleuca
ENSLOCG00000001749	swt1	97	41.187	ENSAOCG00000013932	swt1	56	41.637	Amphiprion_ocellaris
ENSLOCG00000001749	swt1	97	41.187	ENSAPEG00000009613	-	56	41.637	Amphiprion_percula
ENSLOCG00000001749	swt1	97	43.942	ENSATEG00000018946	swt1	55	44.524	Anabas_testudineus
ENSLOCG00000001749	swt1	97	41.912	ENSAPLG00000008607	SWT1	74	44.286	Anas_platyrhynchos
ENSLOCG00000001749	swt1	98	37.634	ENSACAG00000002276	SWT1	62	37.919	Anolis_carolinensis
ENSLOCG00000001749	swt1	98	40.926	ENSANAG00000027068	SWT1	65	40.433	Aotus_nancymaae
ENSLOCG00000001749	swt1	97	42.754	ENSACLG00000009742	swt1	67	43.234	Astatotilapia_calliptera
ENSLOCG00000001749	swt1	98	48.577	ENSAMXG00000010971	swt1	56	48.208	Astyanax_mexicanus
ENSLOCG00000001749	swt1	55	46.823	ENSBTAG00000004492	SWT1	58	43.014	Bos_taurus
ENSLOCG00000001749	swt1	98	41.373	ENSCJAG00000005544	SWT1	60	42.134	Callithrix_jacchus
ENSLOCG00000001749	swt1	99	41.241	ENSCAFG00000013543	SWT1	63	41.815	Canis_familiaris
ENSLOCG00000001749	swt1	98	41.405	ENSCAFG00020015648	SWT1	64	41.982	Canis_lupus_dingo
ENSLOCG00000001749	swt1	99	41.912	ENSCHIG00000023511	SWT1	93	41.533	Capra_hircus
ENSLOCG00000001749	swt1	97	41.604	ENSTSYG00000010470	SWT1	60	41.053	Carlito_syrichta
ENSLOCG00000001749	swt1	93	41.860	ENSCPOG00000014251	SWT1	70	39.965	Cavia_porcellus
ENSLOCG00000001749	swt1	98	41.744	ENSCCAG00000033926	SWT1	65	40.568	Cebus_capucinus
ENSLOCG00000001749	swt1	98	42.066	ENSCATG00000042210	SWT1	92	42.342	Cercocebus_atys
ENSLOCG00000001749	swt1	98	42.251	ENSCLAG00000013959	SWT1	61	42.495	Chinchilla_lanigera
ENSLOCG00000001749	swt1	98	41.882	ENSCSAG00000012895	SWT1	65	40.232	Chlorocebus_sabaeus
ENSLOCG00000001749	swt1	100	43.761	ENSCPBG00000015691	SWT1	62	45.899	Chrysemys_picta_bellii
ENSLOCG00000001749	swt1	98	42.115	ENSCANG00000032207	SWT1	92	42.134	Colobus_angolensis_palliatus
ENSLOCG00000001749	swt1	98	41.002	ENSCGRG00001022955	Swt1	63	41.049	Cricetulus_griseus_chok1gshd
ENSLOCG00000001749	swt1	98	40.816	ENSCGRG00000010224	Swt1	61	41.049	Cricetulus_griseus_crigri
ENSLOCG00000001749	swt1	99	41.021	ENSCSEG00000017352	swt1	74	41.356	Cynoglossus_semilaevis
ENSLOCG00000001749	swt1	98	50.095	ENSDARG00000094010	swt1	55	50.719	Danio_rerio
ENSLOCG00000001749	swt1	88	41.393	ENSDNOG00000005254	SWT1	60	41.600	Dasypus_novemcinctus
ENSLOCG00000001749	swt1	98	41.002	ENSDORG00000010531	Swt1	64	42.058	Dipodomys_ordii
ENSLOCG00000001749	swt1	99	38.628	ENSEASG00005005530	SWT1	66	38.832	Equus_asinus_asinus
ENSLOCG00000001749	swt1	99	40.147	ENSECAG00000012085	SWT1	66	38.515	Equus_caballus
ENSLOCG00000001749	swt1	100	46.794	ENSELUG00000020565	swt1	56	48.328	Esox_lucius
ENSLOCG00000001749	swt1	98	41.405	ENSFCAG00000011286	SWT1	59	41.728	Felis_catus
ENSLOCG00000001749	swt1	97	42.642	ENSFALG00000003206	SWT1	61	42.531	Ficedula_albicollis
ENSLOCG00000001749	swt1	98	41.373	ENSFDAG00000007569	SWT1	61	42.599	Fukomys_damarensis
ENSLOCG00000001749	swt1	100	43.534	ENSGALG00000034230	SWT1	62	43.794	Gallus_gallus
ENSLOCG00000001749	swt1	99	40.517	ENSGAFG00000007803	-	61	39.836	Gambusia_affinis
ENSLOCG00000001749	swt1	93	44.444	ENSGAGG00000025050	SWT1	91	45.644	Gopherus_agassizii
ENSLOCG00000001749	swt1	92	42.300	ENSGGOG00000041167	-	92	42.300	Gorilla_gorilla
ENSLOCG00000001749	swt1	100	42.707	ENSHBUG00000006188	swt1	66	43.174	Haplochromis_burtoni
ENSLOCG00000001749	swt1	98	41.929	ENSHGLG00000006542	SWT1	63	42.576	Heterocephalus_glaber_female
ENSLOCG00000001749	swt1	98	42.115	ENSHGLG00100014408	SWT1	61	42.755	Heterocephalus_glaber_male
ENSLOCG00000001749	swt1	98	49.348	ENSIPUG00000009113	-	56	48.829	Ictalurus_punctatus
ENSLOCG00000001749	swt1	98	40.037	ENSSTOG00000010356	SWT1	60	41.530	Ictidomys_tridecemlineatus
ENSLOCG00000001749	swt1	98	38.798	ENSJJAG00000015927	Swt1	62	39.926	Jaculus_jaculus
ENSLOCG00000001749	swt1	97	44.563	ENSKMAG00000012533	swt1	59	43.428	Kryptolebias_marmoratus
ENSLOCG00000001749	swt1	97	42.328	ENSLBEG00000020663	-	57	43.396	Labrus_bergylta
ENSLOCG00000001749	swt1	100	46.014	ENSLACG00000009194	SWT1	82	46.416	Latimeria_chalumnae
ENSLOCG00000001749	swt1	98	40.775	ENSLAFG00000004346	-	92	41.516	Loxodonta_africana
ENSLOCG00000001749	swt1	98	42.222	ENSMFAG00000031793	SWT1	93	41.982	Macaca_fascicularis
ENSLOCG00000001749	swt1	97	41.887	ENSMMUG00000013882	SWT1	92	40.506	Macaca_mulatta
ENSLOCG00000001749	swt1	98	42.407	ENSMNEG00000035502	SWT1	93	41.982	Macaca_nemestrina
ENSLOCG00000001749	swt1	98	41.929	ENSMLEG00000038692	SWT1	92	41.982	Mandrillus_leucophaeus
ENSLOCG00000001749	swt1	100	42.531	ENSMZEG00005018489	swt1	66	43.003	Maylandia_zebra
ENSLOCG00000001749	swt1	100	39.895	ENSMGAG00000000973	SWT1	96	42.249	Meleagris_gallopavo
ENSLOCG00000001749	swt1	93	39.880	ENSMAUG00000007996	Swt1	64	37.397	Mesocricetus_auratus
ENSLOCG00000001749	swt1	98	41.078	ENSMICG00000014975	SWT1	61	41.549	Microcebus_murinus
ENSLOCG00000001749	swt1	98	42.037	ENSMOCG00000009776	Swt1	75	38.182	Microtus_ochrogaster
ENSLOCG00000001749	swt1	97	42.883	ENSMODG00000007472	SWT1	59	44.464	Monodelphis_domestica
ENSLOCG00000001749	swt1	100	44.224	ENSMALG00000019308	swt1	58	43.932	Monopterus_albus
ENSLOCG00000001749	swt1	97	42.351	MGP_CAROLIEiJ_G0014692	Swt1	69	48.555	Mus_caroli
ENSLOCG00000001749	swt1	97	42.537	ENSMUSG00000052748	Swt1	69	49.133	Mus_musculus
ENSLOCG00000001749	swt1	98	41.481	MGP_PahariEiJ_G0027928	Swt1	69	47.399	Mus_pahari
ENSLOCG00000001749	swt1	97	42.724	MGP_SPRETEiJ_G0015499	Swt1	69	49.711	Mus_spretus
ENSLOCG00000001749	swt1	98	42.144	ENSMPUG00000011913	SWT1	60	42.058	Mustela_putorius_furo
ENSLOCG00000001749	swt1	98	41.590	ENSMLUG00000001142	SWT1	58	43.414	Myotis_lucifugus
ENSLOCG00000001749	swt1	98	41.636	ENSNGAG00000021080	Swt1	58	42.037	Nannospalax_galili
ENSLOCG00000001749	swt1	98	41.111	ENSNLEG00000018031	SWT1	73	37.518	Nomascus_leucogenys
ENSLOCG00000001749	swt1	85	42.336	ENSMEUG00000000236	-	50	42.336	Notamacropus_eugenii
ENSLOCG00000001749	swt1	97	46.080	ENSONIG00000009994	swt1	97	46.080	Oreochromis_niloticus
ENSLOCG00000001749	swt1	100	38.053	ENSOANG00000001013	-	70	40.244	Ornithorhynchus_anatinus
ENSLOCG00000001749	swt1	97	41.101	ENSOCUG00000004901	SWT1	61	42.857	Oryctolagus_cuniculus
ENSLOCG00000001749	swt1	97	40.459	ENSORLG00000009682	swt1	97	32.628	Oryzias_latipes
ENSLOCG00000001749	swt1	97	40.998	ENSORLG00020011654	swt1	59	41.824	Oryzias_latipes_hni
ENSLOCG00000001749	swt1	97	40.459	ENSORLG00015007734	swt1	95	32.822	Oryzias_latipes_hsok
ENSLOCG00000001749	swt1	97	42.908	ENSOMEG00000006607	swt1	56	42.981	Oryzias_melastigma
ENSLOCG00000001749	swt1	98	43.494	ENSOGAG00000016195	SWT1	62	41.873	Otolemur_garnettii
ENSLOCG00000001749	swt1	99	42.096	ENSOARG00000004156	SWT1	59	42.246	Ovis_aries
ENSLOCG00000001749	swt1	98	41.558	ENSPPAG00000021400	SWT1	73	38.047	Pan_paniscus
ENSLOCG00000001749	swt1	98	41.405	ENSPPRG00000023754	SWT1	59	41.728	Panthera_pardus
ENSLOCG00000001749	swt1	98	41.405	ENSPTIG00000021889	SWT1	59	41.728	Panthera_tigris_altaica
ENSLOCG00000001749	swt1	98	41.558	ENSPTRG00000001777	SWT1	60	42.266	Pan_troglodytes
ENSLOCG00000001749	swt1	98	41.513	ENSPANG00000005099	SWT1	92	41.622	Papio_anubis
ENSLOCG00000001749	swt1	97	48.308	ENSPKIG00000005979	swt1	56	49.084	Paramormyrops_kingsleyae
ENSLOCG00000001749	swt1	100	42.549	ENSPSIG00000008961	SWT1	61	44.483	Pelodiscus_sinensis
ENSLOCG00000001749	swt1	99	42.674	ENSPEMG00000008208	Swt1	60	42.068	Peromyscus_maniculatus_bairdii
ENSLOCG00000001749	swt1	97	41.848	ENSPCIG00000002443	SWT1	60	42.609	Phascolarctos_cinereus
ENSLOCG00000001749	swt1	99	40.690	ENSPFOG00000010988	-	68	39.165	Poecilia_formosa
ENSLOCG00000001749	swt1	99	40.862	ENSPLAG00000022908	-	58	40.704	Poecilia_latipinna
ENSLOCG00000001749	swt1	99	40.972	ENSPMEG00000006943	-	57	40.972	Poecilia_mexicana
ENSLOCG00000001749	swt1	98	40.968	ENSPPYG00000000415	SWT1	73	38.394	Pongo_abelii
ENSLOCG00000001749	swt1	85	43.947	ENSPCAG00000008337	SWT1	50	46.917	Procavia_capensis
ENSLOCG00000001749	swt1	68	54.369	ENSPCOG00000018195	-	54	54.369	Propithecus_coquereli
ENSLOCG00000001749	swt1	97	39.474	ENSPVAG00000005968	SWT1	59	40.296	Pteropus_vampyrus
ENSLOCG00000001749	swt1	100	42.707	ENSPNYG00000012934	swt1	66	43.174	Pundamilia_nyererei
ENSLOCG00000001749	swt1	98	49.067	ENSPNAG00000017795	swt1	55	49.067	Pygocentrus_nattereri
ENSLOCG00000001749	swt1	97	42.193	ENSRNOG00000032258	Swt1	65	40.325	Rattus_norvegicus
ENSLOCG00000001749	swt1	98	40.299	ENSRBIG00000040630	SWT1	92	41.261	Rhinopithecus_bieti
ENSLOCG00000001749	swt1	59	48.598	ENSRROG00000028596	SWT1	72	40.890	Rhinopithecus_roxellana
ENSLOCG00000001749	swt1	98	42.115	ENSSBOG00000028825	SWT1	73	37.787	Saimiri_boliviensis_boliviensis
ENSLOCG00000001749	swt1	97	42.058	ENSSHAG00000009241	SWT1	60	43.262	Sarcophilus_harrisii
ENSLOCG00000001749	swt1	100	51.724	ENSSFOG00015004895	swt1	55	53.986	Scleropages_formosus
ENSLOCG00000001749	swt1	97	42.190	ENSSDUG00000012345	swt1	56	43.262	Seriola_dumerili
ENSLOCG00000001749	swt1	97	42.629	ENSSLDG00000003821	swt1	56	43.085	Seriola_lalandi_dorsalis
ENSLOCG00000001749	swt1	50	40.221	ENSSARG00000011524	-	50	56.522	Sorex_araneus
ENSLOCG00000001749	swt1	98	42.672	ENSSPUG00000003899	SWT1	58	42.672	Sphenodon_punctatus
ENSLOCG00000001749	swt1	97	41.947	ENSSPAG00000001030	swt1	95	33.028	Stegastes_partitus
ENSLOCG00000001749	swt1	98	42.222	ENSSSCG00000015569	SWT1	74	37.697	Sus_scrofa
ENSLOCG00000001749	swt1	99	41.486	ENSTGUG00000003718	-	96	42.727	Taeniopygia_guttata
ENSLOCG00000001749	swt1	97	42.458	ENSTRUG00000006420	swt1	58	42.458	Takifugu_rubripes
ENSLOCG00000001749	swt1	56	51.935	ENSTNIG00000018118	-	91	52.564	Tetraodon_nigroviridis
ENSLOCG00000001749	swt1	97	39.106	ENSTTRG00000005914	SWT1	65	38.294	Tursiops_truncatus
ENSLOCG00000001749	swt1	98	41.544	ENSUAMG00000020937	SWT1	65	41.906	Ursus_americanus
ENSLOCG00000001749	swt1	97	41.697	ENSUMAG00000021918	SWT1	62	41.982	Ursus_maritimus
ENSLOCG00000001749	swt1	83	41.176	ENSVPAG00000011855	SWT1	51	44.000	Vicugna_pacos
ENSLOCG00000001749	swt1	98	41.405	ENSVVUG00000009182	SWT1	62	41.982	Vulpes_vulpes
ENSLOCG00000001749	swt1	99	41.289	ENSXMAG00000023472	-	58	41.207	Xiphophorus_maculatus