EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSLOCG00000001877 (Gene tree)
Gene ID
102697221
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Lepisosteus_oculatus
Status
putative
Strand
Plus strand
Length
13950 bases
Position
chrLG6:2342149-2356098
Accession
102697221
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLOCP00000002189PABPPF00658.181.1e-3111
ENSLOCP00000002189RRM_5PF13893.63.8e-0911
ENSLOCP00000002189RRM_1PF00076.226.5e-9114
ENSLOCP00000002189RRM_1PF00076.226.5e-9124
ENSLOCP00000002189RRM_1PF00076.226.5e-9134
ENSLOCP00000002189RRM_1PF00076.226.5e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLOCT00000002194-1908XM_006631218ENSLOCP00000002189635 (aa)XP_006631282W5M1D2
Gene Model
Click here to download ENSLOCG00000001877's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000001877's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSLOCG00000001877pabpc45831.579ENSLOCG00000012575ELAVL28531.788
ENSLOCG00000001877pabpc49878.696ENSLOCG00000009681PABPC19878.378
ENSLOCG00000001877pabpc45237.500ENSLOCG00000015690celf27338.372
ENSLOCG00000001877pabpc45237.500ENSLOCG00000005966celf16137.500
ENSLOCG00000001877pabpc46030.061ENSLOCG00000009363elavl48130.061
ENSLOCG00000001877pabpc45730.000ENSLOCG00000015324tia1l7230.000
ENSLOCG00000001877pabpc49871.586ENSLOCG00000007519pabpc1l9971.586
ENSLOCG00000001877pabpc45734.437ENSLOCG00000000284elavl1b9034.437
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLOCG00000001877pabpc49986.142ENSG00000090621PABPC49998.198Homo_sapiens
ENSLOCG00000001877pabpc49992.026ENSAPOG00000001161pabpc49991.339Acanthochromis_polyacanthus
ENSLOCG00000001877pabpc49850.633ENSAMEG00000015083-9950.000Ailuropoda_melanoleuca
ENSLOCG00000001877pabpc49982.982ENSAMEG00000011535-9982.229Ailuropoda_melanoleuca
ENSLOCG00000001877pabpc410092.126ENSACIG00000023343pabpc49992.126Amphilophus_citrinellus
ENSLOCG00000001877pabpc49991.866ENSAOCG00000021529pabpc49991.181Amphiprion_ocellaris
ENSLOCG00000001877pabpc49991.866ENSAPEG00000019196pabpc49991.181Amphiprion_percula
ENSLOCG00000001877pabpc49991.242ENSATEG00000007402pabpc49990.409Anabas_testudineus
ENSLOCG00000001877pabpc410089.812ENSAPLG00000009729-10089.028Anas_platyrhynchos
ENSLOCG00000001877pabpc49988.339ENSACAG00000002544PABPC410087.456Anolis_carolinensis
ENSLOCG00000001877pabpc49986.142ENSANAG00000025079PABPC49985.354Aotus_nancymaae
ENSLOCG00000001877pabpc410091.969ENSACLG00000019558pabpc49991.969Astatotilapia_calliptera
ENSLOCG00000001877pabpc410086.164ENSAMXG00000018779pabpc410086.164Astyanax_mexicanus
ENSLOCG00000001877pabpc49983.821ENSBTAG00000017125PABPC49983.205Bos_taurus
ENSLOCG00000001877pabpc45784.524ENSBTAG00000048536-9384.524Bos_taurus
ENSLOCG00000001877pabpc47383.482ENSCJAG00000045953-8581.250Callithrix_jacchus
ENSLOCG00000001877pabpc49986.142ENSCJAG00000002512-9985.354Callithrix_jacchus
ENSLOCG00000001877pabpc49986.614ENSCAFG00000003081PABPC49985.827Canis_familiaris
ENSLOCG00000001877pabpc49587.624ENSCAFG00020004161PABPC49982.380Canis_lupus_dingo
ENSLOCG00000001877pabpc49981.928ENSCHIG00000019398-9982.078Capra_hircus
ENSLOCG00000001877pabpc49967.132ENSCHIG00000023385-9966.512Capra_hircus
ENSLOCG00000001877pabpc49986.299ENSTSYG00000006532PABPC49985.512Carlito_syrichta
ENSLOCG00000001877pabpc49986.120ENSCAPG00000015984PABPC410085.331Cavia_aperea
ENSLOCG00000001877pabpc49986.299ENSCPOG00000009552PABPC49985.512Cavia_porcellus
ENSLOCG00000001877pabpc49986.142ENSCCAG00000037306PABPC49985.354Cebus_capucinus
ENSLOCG00000001877pabpc49986.299ENSCATG00000042164PABPC49985.512Cercocebus_atys
ENSLOCG00000001877pabpc49986.299ENSCLAG00000011899PABPC49985.512Chinchilla_lanigera
ENSLOCG00000001877pabpc49981.928ENSCSAG00000001135PABPC49982.078Chlorocebus_sabaeus
ENSLOCG00000001877pabpc48590.789ENSCHOG00000005327PABPC47991.375Choloepus_hoffmanni
ENSLOCG00000001877pabpc410090.125ENSCPBG00000001038PABPC410089.342Chrysemys_picta_bellii
ENSLOCG00000001877pabpc49986.603ENSCANG00000034177PABPC410085.805Colobus_angolensis_palliatus
ENSLOCG00000001877pabpc49886.058ENSCGRG00001018166Pabpc49985.174Cricetulus_griseus_chok1gshd
ENSLOCG00000001877pabpc49786.364ENSCGRG00000009777Pabpc49985.463Cricetulus_griseus_crigri
ENSLOCG00000001877pabpc410090.596ENSCSEG00000000130pabpc410090.596Cynoglossus_semilaevis
ENSLOCG00000001877pabpc49991.853ENSCVAG00000019246pabpc410091.853Cyprinodon_variegatus
ENSLOCG00000001877pabpc49993.631ENSDARG00000059259pabpc410093.554Danio_rerio
ENSLOCG00000001877pabpc49985.664ENSDNOG00000018444-10084.779Dasypus_novemcinctus
ENSLOCG00000001877pabpc49982.774ENSDORG00000011581Pabpc49983.642Dipodomys_ordii
ENSLOCG00000001877pabpc48555.780ENSETEG00000009172-9954.137Echinops_telfairi
ENSLOCG00000001877pabpc49992.063ENSETEG00000018453-8492.063Echinops_telfairi
ENSLOCG00000001877pabpc49678.664ENSEBUG00000013782pabpc49978.309Eptatretus_burgeri
ENSLOCG00000001877pabpc49876.358ENSEBUG00000000992pabpc49976.038Eptatretus_burgeri
ENSLOCG00000001877pabpc49982.078ENSEASG00005014119PABPC49982.229Equus_asinus_asinus
ENSLOCG00000001877pabpc49982.078ENSECAG00000009396PABPC49982.229Equus_caballus
ENSLOCG00000001877pabpc49781.720ENSEEUG00000002962PABPC49980.572Erinaceus_europaeus
ENSLOCG00000001877pabpc49992.516ENSELUG00000003195pabpc49991.837Esox_lucius
ENSLOCG00000001877pabpc49986.614ENSFCAG00000015254-9985.827Felis_catus
ENSLOCG00000001877pabpc410089.969ENSFALG00000000543PABPC410089.185Ficedula_albicollis
ENSLOCG00000001877pabpc49982.078ENSFDAG00000020016-9981.928Fukomys_damarensis
ENSLOCG00000001877pabpc48954.184ENSFDAG00000010581-9951.618Fukomys_damarensis
ENSLOCG00000001877pabpc410091.811ENSFHEG00000007548pabpc49991.811Fundulus_heteroclitus
ENSLOCG00000001877pabpc49988.486ENSGMOG00000019025pabpc49988.486Gadus_morhua
ENSLOCG00000001877pabpc49990.079ENSGALG00000003800PABPC49989.291Gallus_gallus
ENSLOCG00000001877pabpc49996.163ENSGAFG00000018195pabpc410096.107Gambusia_affinis
ENSLOCG00000001877pabpc410089.202ENSGACG00000007179pabpc410089.202Gasterosteus_aculeatus
ENSLOCG00000001877pabpc410090.282ENSGAGG00000001888PABPC410089.498Gopherus_agassizii
ENSLOCG00000001877pabpc49986.142ENSGGOG00000004002PABPC49985.354Gorilla_gorilla
ENSLOCG00000001877pabpc410091.811ENSHBUG00000020206pabpc49991.811Haplochromis_burtoni
ENSLOCG00000001877pabpc49986.142ENSHGLG00000011162PABPC49985.354Heterocephalus_glaber_female
ENSLOCG00000001877pabpc49986.142ENSHGLG00100001580PABPC49985.354Heterocephalus_glaber_male
ENSLOCG00000001877pabpc410090.110ENSHCOG00000012694pabpc49990.424Hippocampus_comes
ENSLOCG00000001877pabpc49791.922ENSIPUG00000016620pabpc49991.139Ictalurus_punctatus
ENSLOCG00000001877pabpc49985.782ENSSTOG00000010416PABPC49984.992Ictidomys_tridecemlineatus
ENSLOCG00000001877pabpc49982.689ENSJJAG00000007781Pabpc49981.944Jaculus_jaculus
ENSLOCG00000001877pabpc49989.905ENSKMAG00000013597pabpc49989.905Kryptolebias_marmoratus
ENSLOCG00000001877pabpc49990.063ENSLBEG00000013654pabpc49990.063Labrus_bergylta
ENSLOCG00000001877pabpc410090.923ENSLACG00000011907PABPC410090.297Latimeria_chalumnae
ENSLOCG00000001877pabpc49986.098ENSLAFG00000000151PABPC49985.308Loxodonta_africana
ENSLOCG00000001877pabpc49986.299ENSMFAG00000041481PABPC49985.512Macaca_fascicularis
ENSLOCG00000001877pabpc49981.928ENSMMUG00000007497PABPC49982.078Macaca_mulatta
ENSLOCG00000001877pabpc49986.299ENSMNEG00000043054PABPC49985.512Macaca_nemestrina
ENSLOCG00000001877pabpc49986.299ENSMLEG00000040716PABPC49985.512Mandrillus_leucophaeus
ENSLOCG00000001877pabpc49991.707ENSMAMG00000010025pabpc49990.866Mastacembelus_armatus
ENSLOCG00000001877pabpc410091.811ENSMZEG00005006141pabpc49991.811Maylandia_zebra
ENSLOCG00000001877pabpc49986.364ENSMGAG00000005408PABPC410085.522Meleagris_gallopavo
ENSLOCG00000001877pabpc47181.429ENSMAUG00000001295-9779.524Mesocricetus_auratus
ENSLOCG00000001877pabpc45780.702ENSMAUG00000004089-9280.702Mesocricetus_auratus
ENSLOCG00000001877pabpc47590.625ENSMAUG00000019763-8387.736Mesocricetus_auratus
ENSLOCG00000001877pabpc48885.765ENSMICG00000016633-9985.284Microcebus_murinus
ENSLOCG00000001877pabpc49974.382ENSMICG00000036729-10074.028Microcebus_murinus
ENSLOCG00000001877pabpc49986.804ENSMOCG00000006763Pabpc49985.377Microtus_ochrogaster
ENSLOCG00000001877pabpc410086.792ENSMMOG00000002363pabpc49987.147Mola_mola
ENSLOCG00000001877pabpc45972.533ENSMODG00000018051-9672.533Monodelphis_domestica
ENSLOCG00000001877pabpc49885.538ENSMODG00000017657-10084.488Monodelphis_domestica
ENSLOCG00000001877pabpc49991.733ENSMALG00000011017pabpc49990.895Monopterus_albus
ENSLOCG00000001877pabpc49981.599MGP_CAROLIEiJ_G0026435-10097.872Mus_caroli
ENSLOCG00000001877pabpc49872.461MGP_CAROLIEiJ_G0024864-10074.028Mus_caroli
ENSLOCG00000001877pabpc49985.669ENSMUSG00000011257Pabpc49995.210Mus_musculus
ENSLOCG00000001877pabpc49982.192MGP_PahariEiJ_G0028765Pabpc410098.582Mus_pahari
ENSLOCG00000001877pabpc49971.355MGP_SPRETEiJ_G0027415Pabpc410097.872Mus_spretus
ENSLOCG00000001877pabpc49983.133ENSMPUG00000014414-9982.380Mustela_putorius_furo
ENSLOCG00000001877pabpc49547.533ENSMPUG00000006836-10047.039Mustela_putorius_furo
ENSLOCG00000001877pabpc49985.466ENSMLUG00000012068PABPC49984.676Myotis_lucifugus
ENSLOCG00000001877pabpc49985.940ENSNGAG00000018292Pabpc49985.150Nannospalax_galili
ENSLOCG00000001877pabpc45997.115ENSNBRG00000009708pabpc49897.115Neolamprologus_brichardi
ENSLOCG00000001877pabpc46496.988ENSNBRG00000010047-7296.988Neolamprologus_brichardi
ENSLOCG00000001877pabpc49986.299ENSNLEG00000011928PABPC49985.512Nomascus_leucogenys
ENSLOCG00000001877pabpc48391.026ENSOPRG00000011984PABPC48590.476Ochotona_princeps
ENSLOCG00000001877pabpc49976.681ENSODEG00000017434-10075.157Octodon_degus
ENSLOCG00000001877pabpc45284.286ENSODEG00000013457-10084.286Octodon_degus
ENSLOCG00000001877pabpc49985.827ENSODEG00000006592-9985.039Octodon_degus
ENSLOCG00000001877pabpc410091.969ENSONIG00000008176pabpc49991.969Oreochromis_niloticus
ENSLOCG00000001877pabpc49989.308ENSOANG00000010001PABPC49988.679Ornithorhynchus_anatinus
ENSLOCG00000001877pabpc49582.362ENSOCUG00000000562PABPC48882.520Oryctolagus_cuniculus
ENSLOCG00000001877pabpc49995.077ENSORLG00000017479pabpc49995.077Oryzias_latipes
ENSLOCG00000001877pabpc49995.077ENSORLG00020018644pabpc49995.077Oryzias_latipes_hni
ENSLOCG00000001877pabpc49995.077ENSORLG00015015042pabpc49995.077Oryzias_latipes_hsok
ENSLOCG00000001877pabpc49990.271ENSOMEG00000014410pabpc49989.449Oryzias_melastigma
ENSLOCG00000001877pabpc49983.206ENSOGAG00000004067PABPC49983.103Otolemur_garnettii
ENSLOCG00000001877pabpc49981.928ENSOARG00000020060PABPC49982.078Ovis_aries
ENSLOCG00000001877pabpc49986.142ENSPPAG00000043625PABPC49985.354Pan_paniscus
ENSLOCG00000001877pabpc49986.614ENSPPRG00000024727PABPC49985.827Panthera_pardus
ENSLOCG00000001877pabpc49986.614ENSPTIG00000005829PABPC49985.827Panthera_tigris_altaica
ENSLOCG00000001877pabpc49986.142ENSPTRG00000000573PABPC49985.354Pan_troglodytes
ENSLOCG00000001877pabpc49986.299ENSPANG00000009484PABPC49985.512Papio_anubis
ENSLOCG00000001877pabpc410091.969ENSPKIG00000025356pabpc49992.131Paramormyrops_kingsleyae
ENSLOCG00000001877pabpc410090.596ENSPSIG00000016892PABPC410089.812Pelodiscus_sinensis
ENSLOCG00000001877pabpc410087.244ENSPMGG00000009073pabpc49986.299Periophthalmus_magnuspinnatus
ENSLOCG00000001877pabpc410080.245ENSPEMG00000024193-10080.586Peromyscus_maniculatus_bairdii
ENSLOCG00000001877pabpc49985.692ENSPEMG00000023569-9984.906Peromyscus_maniculatus_bairdii
ENSLOCG00000001877pabpc48876.224ENSPMAG00000002836pabpc49976.923Petromyzon_marinus
ENSLOCG00000001877pabpc49673.006ENSPMAG00000007885pabpc49972.200Petromyzon_marinus
ENSLOCG00000001877pabpc49795.012ENSPCIG00000020674PABPC410095.388Phascolarctos_cinereus
ENSLOCG00000001877pabpc410091.181ENSPFOG00000002682pabpc49991.181Poecilia_formosa
ENSLOCG00000001877pabpc410091.339ENSPLAG00000010112pabpc49991.339Poecilia_latipinna
ENSLOCG00000001877pabpc49992.026ENSPMEG00000019739pabpc49991.339Poecilia_mexicana
ENSLOCG00000001877pabpc410091.496ENSPREG00000001589pabpc49991.496Poecilia_reticulata
ENSLOCG00000001877pabpc49981.777ENSPPYG00000001506PABPC49981.928Pongo_abelii
ENSLOCG00000001877pabpc49977.410ENSPCAG00000003341PABPC49977.560Procavia_capensis
ENSLOCG00000001877pabpc49971.262ENSPCOG00000025882-9871.262Propithecus_coquereli
ENSLOCG00000001877pabpc49985.692ENSPCOG00000023725-9985.377Propithecus_coquereli
ENSLOCG00000001877pabpc49882.000ENSPVAG00000002187PABPC410081.167Pteropus_vampyrus
ENSLOCG00000001877pabpc410091.969ENSPNYG00000006134pabpc49991.969Pundamilia_nyererei
ENSLOCG00000001877pabpc410092.296ENSPNAG00000024355pabpc410092.296Pygocentrus_nattereri
ENSLOCG00000001877pabpc49980.734ENSRNOG00000028592AABR07035074.19981.019Rattus_norvegicus
ENSLOCG00000001877pabpc49982.875ENSRNOG00000015642Pabpc49983.179Rattus_norvegicus
ENSLOCG00000001877pabpc49986.299ENSRBIG00000039761PABPC49985.512Rhinopithecus_bieti
ENSLOCG00000001877pabpc49986.299ENSRROG00000033355PABPC49985.512Rhinopithecus_roxellana
ENSLOCG00000001877pabpc49986.142ENSSBOG00000026193PABPC49985.354Saimiri_boliviensis_boliviensis
ENSLOCG00000001877pabpc49889.263ENSSHAG00000018139PABPC410088.088Sarcophilus_harrisii
ENSLOCG00000001877pabpc49891.749ENSSFOG00015023514pabpc49991.749Scleropages_formosus
ENSLOCG00000001877pabpc49990.363ENSSMAG00000009007pabpc49990.363Scophthalmus_maximus
ENSLOCG00000001877pabpc49991.388ENSSDUG00000012683pabpc49990.551Seriola_dumerili
ENSLOCG00000001877pabpc49991.388ENSSLDG00000013025pabpc49990.551Seriola_lalandi_dorsalis
ENSLOCG00000001877pabpc49975.526ENSSARG00000000310PABPC410075.676Sorex_araneus
ENSLOCG00000001877pabpc410089.151ENSSPUG00000003204PABPC410088.365Sphenodon_punctatus
ENSLOCG00000001877pabpc49991.574ENSSPAG00000009252pabpc410091.223Stegastes_partitus
ENSLOCG00000001877pabpc49986.457ENSSSCG00000003660-9985.669Sus_scrofa
ENSLOCG00000001877pabpc48945.423ENSSSCG00000036170-9645.423Sus_scrofa
ENSLOCG00000001877pabpc410084.604ENSTGUG00000001266PABPC410084.903Taeniopygia_guttata
ENSLOCG00000001877pabpc410089.764ENSTRUG00000005907pabpc49989.764Takifugu_rubripes
ENSLOCG00000001877pabpc410084.252ENSTNIG00000016902pabpc49983.931Tetraodon_nigroviridis
ENSLOCG00000001877pabpc49970.500ENSTBEG00000009035PABPC410070.833Tupaia_belangeri
ENSLOCG00000001877pabpc49964.137ENSTTRG00000014340PABPC410070.000Tursiops_truncatus
ENSLOCG00000001877pabpc49986.614ENSUAMG00000000303PABPC49985.827Ursus_americanus
ENSLOCG00000001877pabpc49990.519ENSUMAG00000019585PABPC49993.478Ursus_maritimus
ENSLOCG00000001877pabpc47871.598ENSVPAG00000010041PABPC47271.598Vicugna_pacos
ENSLOCG00000001877pabpc49986.614ENSVVUG00000005215PABPC49985.827Vulpes_vulpes
ENSLOCG00000001877pabpc49985.220ENSXETG00000010946pabpc410084.434Xenopus_tropicalis
ENSLOCG00000001877pabpc46797.633ENSXETG00000027221-10097.633Xenopus_tropicalis
ENSLOCG00000001877pabpc49995.503ENSXCOG00000013190pabpc49694.811Xiphophorus_couchianus
ENSLOCG00000001877pabpc410091.366ENSXMAG00000019007pabpc410091.366Xiphophorus_maculatus

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