EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000001885 (Gene tree)
Gene ID: 102689556
Gene Symbol: polr2j
Alias: rpb11|zgc:110005
Full Name: RNA polymerase II subunit J
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 3490 bases
Position: chrLG22:1185508-1188997
Accession: 102689556
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000002185	RNA_pol_L_2	PF13656.6	2.9e-29	1	1
ENSLOCP00000002185	RNA_pol_L	PF01193.24	1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000002186	-	1602	XM_006640816	ENSLOCP00000002185	132 (aa)	XP_006640879	W5M1C8

Gene Model

Click here to download ENSLOCG00000001885's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000001885's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000001885	polr2j	52	41.667	ENSLOCG00000014976	polr1d	97	41.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000001885	polr2j	89	96.581	ENSG00000005075	POLR2J	100	96.581	Homo_sapiens
ENSLOCG00000001885	polr2j	81	94.393	ENSG00000228049	POLR2J2	94	91.743	Homo_sapiens
ENSLOCG00000001885	polr2j	89	97.436	ENSAPOG00000019538	polr2j	100	97.436	Acanthochromis_polyacanthus
ENSLOCG00000001885	polr2j	89	88.976	ENSAMEG00000015480	-	100	88.976	Ailuropoda_melanoleuca
ENSLOCG00000001885	polr2j	83	74.545	ENSACIG00000014549	POLR2J2	91	74.545	Amphilophus_citrinellus
ENSLOCG00000001885	polr2j	89	96.581	ENSAOCG00000006937	polr2j	100	96.581	Amphiprion_ocellaris
ENSLOCG00000001885	polr2j	89	97.436	ENSAPEG00000021761	polr2j	100	97.436	Amphiprion_percula
ENSLOCG00000001885	polr2j	89	97.436	ENSATEG00000013312	-	100	97.436	Anabas_testudineus
ENSLOCG00000001885	polr2j	89	97.436	ENSATEG00000009731	polr2j	100	97.436	Anabas_testudineus
ENSLOCG00000001885	polr2j	77	94.059	ENSAPLG00000003744	-	100	94.059	Anas_platyrhynchos
ENSLOCG00000001885	polr2j	89	87.179	ENSACAG00000000251	POLR2J	100	87.179	Anolis_carolinensis
ENSLOCG00000001885	polr2j	89	97.436	ENSACLG00000014564	polr2j	100	97.436	Astatotilapia_calliptera
ENSLOCG00000001885	polr2j	89	100.000	ENSAMXG00000007517	polr2j	100	100.000	Astyanax_mexicanus
ENSLOCG00000001885	polr2j	55	65.753	ENSBTAG00000048046	-	61	65.753	Bos_taurus
ENSLOCG00000001885	polr2j	83	68.182	WBGene00012187	rpb-11	89	68.182	Caenorhabditis_elegans
ENSLOCG00000001885	polr2j	89	96.581	ENSCJAG00000016203	-	100	96.581	Callithrix_jacchus
ENSLOCG00000001885	polr2j	89	96.581	ENSCAFG00000013683	-	100	96.581	Canis_familiaris
ENSLOCG00000001885	polr2j	75	95.960	ENSTSYG00000029243	-	85	95.960	Carlito_syrichta
ENSLOCG00000001885	polr2j	89	96.581	ENSCPOG00000001401	-	100	96.581	Cavia_porcellus
ENSLOCG00000001885	polr2j	89	73.504	ENSCATG00000016595	-	97	85.870	Cercocebus_atys
ENSLOCG00000001885	polr2j	89	96.581	ENSCLAG00000005238	-	100	96.581	Chinchilla_lanigera
ENSLOCG00000001885	polr2j	89	96.581	ENSCSAG00000018092	-	100	96.581	Chlorocebus_sabaeus
ENSLOCG00000001885	polr2j	89	82.051	ENSCING00000020531	-	100	82.051	Ciona_intestinalis
ENSLOCG00000001885	polr2j	89	82.051	ENSCSAVG00000006948	-	100	82.051	Ciona_savignyi
ENSLOCG00000001885	polr2j	89	96.581	ENSCGRG00001012814	Polr2j	100	96.581	Cricetulus_griseus_chok1gshd
ENSLOCG00000001885	polr2j	89	82.051	ENSCGRG00000008433	Polr2j	100	82.051	Cricetulus_griseus_crigri
ENSLOCG00000001885	polr2j	89	94.872	ENSCSEG00000020352	polr2j	100	94.872	Cynoglossus_semilaevis
ENSLOCG00000001885	polr2j	89	96.581	ENSCVAG00000014267	polr2j	100	96.581	Cyprinodon_variegatus
ENSLOCG00000001885	polr2j	89	99.145	ENSDARG00000035146	polr2j	100	99.145	Danio_rerio
ENSLOCG00000001885	polr2j	89	96.581	ENSDORG00000005934	Polr2j	100	96.581	Dipodomys_ordii
ENSLOCG00000001885	polr2j	87	79.130	FBgn0032634	Rpb11	98	79.130	Drosophila_melanogaster
ENSLOCG00000001885	polr2j	89	64.957	ENSEBUG00000016100	polr2j	100	64.957	Eptatretus_burgeri
ENSLOCG00000001885	polr2j	89	96.581	ENSEASG00005016864	-	100	96.581	Equus_asinus_asinus
ENSLOCG00000001885	polr2j	89	98.291	ENSELUG00000012822	polr2j	100	98.291	Esox_lucius
ENSLOCG00000001885	polr2j	89	96.581	ENSFCAG00000000377	-	100	96.581	Felis_catus
ENSLOCG00000001885	polr2j	89	96.581	ENSFALG00000009523	POLR2J	100	96.581	Ficedula_albicollis
ENSLOCG00000001885	polr2j	89	96.581	ENSFDAG00000010507	-	100	96.581	Fukomys_damarensis
ENSLOCG00000001885	polr2j	89	97.436	ENSFHEG00000006625	polr2j	100	97.436	Fundulus_heteroclitus
ENSLOCG00000001885	polr2j	89	98.291	ENSGMOG00000018207	polr2j	100	98.291	Gadus_morhua
ENSLOCG00000001885	polr2j	89	96.581	ENSGALG00000030808	-	100	96.581	Gallus_gallus
ENSLOCG00000001885	polr2j	89	97.436	ENSGAFG00000019555	polr2j	100	97.436	Gambusia_affinis
ENSLOCG00000001885	polr2j	89	97.436	ENSGACG00000003310	polr2j	100	97.436	Gasterosteus_aculeatus
ENSLOCG00000001885	polr2j	86	86.726	ENSGAGG00000018304	-	96	86.726	Gopherus_agassizii
ENSLOCG00000001885	polr2j	76	91.000	ENSGGOG00000004519	-	80	91.000	Gorilla_gorilla
ENSLOCG00000001885	polr2j	89	97.436	ENSHBUG00000008467	polr2j	100	97.436	Haplochromis_burtoni
ENSLOCG00000001885	polr2j	89	96.581	ENSHGLG00000013598	POLR2J	100	96.581	Heterocephalus_glaber_female
ENSLOCG00000001885	polr2j	89	96.581	ENSHGLG00100011242	POLR2J	100	96.581	Heterocephalus_glaber_male
ENSLOCG00000001885	polr2j	89	98.291	ENSHCOG00000014827	polr2j	68	98.291	Hippocampus_comes
ENSLOCG00000001885	polr2j	89	100.000	ENSIPUG00000023960	polr2j	100	100.000	Ictalurus_punctatus
ENSLOCG00000001885	polr2j	89	96.581	ENSSTOG00000006377	POLR2J	100	96.581	Ictidomys_tridecemlineatus
ENSLOCG00000001885	polr2j	89	96.581	ENSJJAG00000013854	-	100	96.581	Jaculus_jaculus
ENSLOCG00000001885	polr2j	89	91.453	ENSJJAG00000018834	-	100	91.453	Jaculus_jaculus
ENSLOCG00000001885	polr2j	99	89.474	ENSKMAG00000014581	polr2j	89	89.474	Kryptolebias_marmoratus
ENSLOCG00000001885	polr2j	89	98.291	ENSLBEG00000005885	polr2j	100	98.291	Labrus_bergylta
ENSLOCG00000001885	polr2j	89	96.581	ENSLAFG00000021507	-	100	96.581	Loxodonta_africana
ENSLOCG00000001885	polr2j	89	86.923	ENSMMUG00000012019	POLR2J	100	86.923	Macaca_mulatta
ENSLOCG00000001885	polr2j	89	98.291	ENSMAMG00000009374	polr2j	100	98.291	Mastacembelus_armatus
ENSLOCG00000001885	polr2j	89	97.436	ENSMZEG00005011932	polr2j	100	97.436	Maylandia_zebra
ENSLOCG00000001885	polr2j	89	96.581	ENSMGAG00000003534	POLR2J	100	96.581	Meleagris_gallopavo
ENSLOCG00000001885	polr2j	89	96.581	ENSMAUG00000013049	Polr2j	100	96.581	Mesocricetus_auratus
ENSLOCG00000001885	polr2j	71	91.489	ENSMICG00000026811	-	94	91.489	Microcebus_murinus
ENSLOCG00000001885	polr2j	89	96.581	ENSMOCG00000001294	Polr2j	100	96.581	Microtus_ochrogaster
ENSLOCG00000001885	polr2j	89	97.436	ENSMMOG00000013265	polr2j	100	97.436	Mola_mola
ENSLOCG00000001885	polr2j	89	88.281	ENSMODG00000013617	-	100	88.281	Monodelphis_domestica
ENSLOCG00000001885	polr2j	89	98.291	ENSMALG00000020749	polr2j	100	98.291	Monopterus_albus
ENSLOCG00000001885	polr2j	89	96.581	MGP_CAROLIEiJ_G0027851	Polr2j	100	96.581	Mus_caroli
ENSLOCG00000001885	polr2j	89	96.581	ENSMUSG00000039771	Polr2j	100	96.581	Mus_musculus
ENSLOCG00000001885	polr2j	89	96.581	MGP_PahariEiJ_G0024434	Polr2j	100	96.581	Mus_pahari
ENSLOCG00000001885	polr2j	89	96.581	MGP_SPRETEiJ_G0028853	Polr2j	100	96.581	Mus_spretus
ENSLOCG00000001885	polr2j	89	96.581	ENSMLUG00000010467	POLR2J	100	96.581	Myotis_lucifugus
ENSLOCG00000001885	polr2j	89	96.581	ENSNGAG00000023412	Polr2j	100	96.581	Nannospalax_galili
ENSLOCG00000001885	polr2j	58	94.805	ENSNBRG00000006580	polr2j	59	94.805	Neolamprologus_brichardi
ENSLOCG00000001885	polr2j	89	75.214	ENSODEG00000008559	-	100	75.214	Octodon_degus
ENSLOCG00000001885	polr2j	89	96.581	ENSODEG00000015648	-	100	96.581	Octodon_degus
ENSLOCG00000001885	polr2j	89	97.436	ENSONIG00000000259	polr2j	100	97.436	Oreochromis_niloticus
ENSLOCG00000001885	polr2j	89	94.017	ENSOANG00000020912	POLR2J	100	94.017	Ornithorhynchus_anatinus
ENSLOCG00000001885	polr2j	89	88.976	ENSOCUG00000023609	POLR2J	100	88.976	Oryctolagus_cuniculus
ENSLOCG00000001885	polr2j	89	97.458	ENSORLG00000029046	polr2j	84	97.458	Oryzias_latipes
ENSLOCG00000001885	polr2j	89	97.458	ENSORLG00020007625	polr2j	84	97.458	Oryzias_latipes_hni
ENSLOCG00000001885	polr2j	89	97.458	ENSORLG00015003457	polr2j	84	97.458	Oryzias_latipes_hsok
ENSLOCG00000001885	polr2j	89	96.581	ENSOMEG00000002097	polr2j	100	96.581	Oryzias_melastigma
ENSLOCG00000001885	polr2j	89	71.875	ENSOGAG00000008250	-	100	71.875	Otolemur_garnettii
ENSLOCG00000001885	polr2j	89	95.763	ENSOARG00000014204	-	98	95.763	Ovis_aries
ENSLOCG00000001885	polr2j	89	96.581	ENSPPRG00000012439	-	100	96.581	Panthera_pardus
ENSLOCG00000001885	polr2j	86	87.719	ENSPTIG00000018714	-	100	93.204	Panthera_tigris_altaica
ENSLOCG00000001885	polr2j	76	95.000	ENSPSIG00000010173	-	100	95.000	Pelodiscus_sinensis
ENSLOCG00000001885	polr2j	89	97.436	ENSPMGG00000021256	polr2j	100	97.436	Periophthalmus_magnuspinnatus
ENSLOCG00000001885	polr2j	89	96.581	ENSPEMG00000015733	Polr2j	100	96.581	Peromyscus_maniculatus_bairdii
ENSLOCG00000001885	polr2j	89	96.581	ENSPCIG00000009026	-	100	96.581	Phascolarctos_cinereus
ENSLOCG00000001885	polr2j	89	97.458	ENSPFOG00000012001	polr2j	100	97.458	Poecilia_formosa
ENSLOCG00000001885	polr2j	89	97.436	ENSPLAG00000014075	polr2j	100	97.436	Poecilia_latipinna
ENSLOCG00000001885	polr2j	89	97.436	ENSPMEG00000020585	polr2j	100	97.436	Poecilia_mexicana
ENSLOCG00000001885	polr2j	89	97.436	ENSPREG00000015255	polr2j	100	97.436	Poecilia_reticulata
ENSLOCG00000001885	polr2j	89	96.581	ENSPCOG00000024573	-	100	96.581	Propithecus_coquereli
ENSLOCG00000001885	polr2j	99	83.206	ENSPVAG00000017770	-	75	83.206	Pteropus_vampyrus
ENSLOCG00000001885	polr2j	89	97.436	ENSPNYG00000014832	polr2j	100	97.436	Pundamilia_nyererei
ENSLOCG00000001885	polr2j	89	97.436	ENSPNAG00000016595	polr2j	100	97.436	Pygocentrus_nattereri
ENSLOCG00000001885	polr2j	89	96.581	ENSRNOG00000001430	Polr2j	100	96.581	Rattus_norvegicus
ENSLOCG00000001885	polr2j	89	96.581	ENSSBOG00000025579	-	100	96.581	Saimiri_boliviensis_boliviensis
ENSLOCG00000001885	polr2j	52	98.551	ENSSHAG00000010443	-	81	98.551	Sarcophilus_harrisii
ENSLOCG00000001885	polr2j	83	97.248	ENSSFOG00015003371	polr2j	83	97.248	Scleropages_formosus
ENSLOCG00000001885	polr2j	89	97.436	ENSSMAG00000006729	polr2j	100	97.436	Scophthalmus_maximus
ENSLOCG00000001885	polr2j	89	97.436	ENSSDUG00000018490	polr2j	100	97.436	Seriola_dumerili
ENSLOCG00000001885	polr2j	89	97.436	ENSSLDG00000022354	polr2j	100	97.436	Seriola_lalandi_dorsalis
ENSLOCG00000001885	polr2j	89	96.581	ENSSPUG00000010802	-	100	96.581	Sphenodon_punctatus
ENSLOCG00000001885	polr2j	89	97.436	ENSSPAG00000021953	polr2j	100	97.436	Stegastes_partitus
ENSLOCG00000001885	polr2j	89	96.581	ENSSSCG00000007688	-	100	96.581	Sus_scrofa
ENSLOCG00000001885	polr2j	89	80.342	ENSSSCG00000003703	-	83	80.342	Sus_scrofa
ENSLOCG00000001885	polr2j	52	98.551	ENSTGUG00000004510	-	100	98.551	Taeniopygia_guttata
ENSLOCG00000001885	polr2j	76	95.000	ENSTGUG00000004501	-	100	95.000	Taeniopygia_guttata
ENSLOCG00000001885	polr2j	89	97.436	ENSTRUG00000020842	polr2j	100	97.436	Takifugu_rubripes
ENSLOCG00000001885	polr2j	89	96.581	ENSTNIG00000002994	polr2j	100	96.581	Tetraodon_nigroviridis
ENSLOCG00000001885	polr2j	82	79.630	ENSTBEG00000005797	-	71	79.630	Tupaia_belangeri
ENSLOCG00000001885	polr2j	89	96.581	ENSUAMG00000011310	-	100	96.581	Ursus_americanus
ENSLOCG00000001885	polr2j	89	96.581	ENSUMAG00000012594	-	100	96.581	Ursus_maritimus
ENSLOCG00000001885	polr2j	89	96.581	ENSXETG00000001108	polr2j	100	96.581	Xenopus_tropicalis
ENSLOCG00000001885	polr2j	89	97.436	ENSXMAG00000012422	polr2j	100	97.436	Xiphophorus_maculatus