EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000002003 (Gene tree)
Gene ID: 102683669
Gene Symbol: snrpd1
Alias: CHUNP6882|fk26a01|wu:fk26a01|zgc:86929
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 1975 bases
Position: chrLG11:2198782-2200756
Accession: 102683669
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000002311	LSM	PF01423.22	3.9e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000002316	-	351	XM_006635537	ENSLOCP00000002311	117 (aa)	XP_006635600	W5M1Q3

Gene Model

Click here to download ENSLOCG00000002003's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000002003's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000002003	snrpd1	80	31.633	ENSLOCG00000006978	snrpd3	70	31.325

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000002003	snrpd1	100	97.436	ENSG00000167088	SNRPD1	100	98.667	Homo_sapiens
ENSLOCG00000002003	snrpd1	94	95.455	ENSAPOG00000019446	snrpd1	60	95.455	Acanthochromis_polyacanthus
ENSLOCG00000002003	snrpd1	100	96.581	ENSAMEG00000002576	SNRPD1	100	96.581	Ailuropoda_melanoleuca
ENSLOCG00000002003	snrpd1	96	96.429	ENSACIG00000011263	snrpd1	100	96.429	Amphilophus_citrinellus
ENSLOCG00000002003	snrpd1	94	95.455	ENSAOCG00000007406	snrpd1	92	95.455	Amphiprion_ocellaris
ENSLOCG00000002003	snrpd1	96	96.429	ENSAPEG00000012539	SNRPD1	100	96.429	Amphiprion_percula
ENSLOCG00000002003	snrpd1	94	90.909	ENSAPEG00000014961	snrpd1	92	90.909	Amphiprion_percula
ENSLOCG00000002003	snrpd1	96	96.429	ENSATEG00000014399	snrpd1	100	96.429	Anabas_testudineus
ENSLOCG00000002003	snrpd1	100	96.581	ENSAPLG00000012256	SNRPD1	98	96.581	Anas_platyrhynchos
ENSLOCG00000002003	snrpd1	100	97.436	ENSACAG00000006364	SNRPD1	98	97.436	Anolis_carolinensis
ENSLOCG00000002003	snrpd1	100	97.436	ENSANAG00000025641	SNRPD1	98	97.436	Aotus_nancymaae
ENSLOCG00000002003	snrpd1	96	96.429	ENSACLG00000017406	snrpd1	100	96.429	Astatotilapia_calliptera
ENSLOCG00000002003	snrpd1	100	96.581	ENSAMXG00000004589	snrpd1	98	96.581	Astyanax_mexicanus
ENSLOCG00000002003	snrpd1	94	94.545	ENSBTAG00000047266	-	92	94.545	Bos_taurus
ENSLOCG00000002003	snrpd1	100	97.436	ENSBTAG00000008292	SNRPD1	98	97.436	Bos_taurus
ENSLOCG00000002003	snrpd1	80	92.553	ENSBTAG00000055316	-	81	92.553	Bos_taurus
ENSLOCG00000002003	snrpd1	80	94.681	ENSBTAG00000012376	-	70	94.681	Bos_taurus
ENSLOCG00000002003	snrpd1	74	79.070	WBGene00004916	snr-3	75	74.468	Caenorhabditis_elegans
ENSLOCG00000002003	snrpd1	100	97.436	ENSCJAG00000042955	SNRPD1	98	97.436	Callithrix_jacchus
ENSLOCG00000002003	snrpd1	100	97.436	ENSCAFG00000018247	SNRPD1	98	97.436	Canis_familiaris
ENSLOCG00000002003	snrpd1	79	96.774	ENSCAFG00020015914	SNRPD1	73	96.774	Canis_lupus_dingo
ENSLOCG00000002003	snrpd1	100	97.436	ENSCHIG00000005557	SNRPD1	98	97.436	Capra_hircus
ENSLOCG00000002003	snrpd1	100	97.436	ENSTSYG00000030028	SNRPD1	98	97.436	Carlito_syrichta
ENSLOCG00000002003	snrpd1	98	97.391	ENSCAPG00000008103	SNRPD1	99	97.391	Cavia_aperea
ENSLOCG00000002003	snrpd1	100	97.436	ENSCPOG00000004679	SNRPD1	99	97.391	Cavia_porcellus
ENSLOCG00000002003	snrpd1	100	97.436	ENSCCAG00000032658	SNRPD1	98	97.436	Cebus_capucinus
ENSLOCG00000002003	snrpd1	100	96.581	ENSCCAG00000020611	-	98	96.581	Cebus_capucinus
ENSLOCG00000002003	snrpd1	80	92.553	ENSCCAG00000005390	-	79	92.553	Cebus_capucinus
ENSLOCG00000002003	snrpd1	94	94.545	ENSCCAG00000016652	-	92	94.545	Cebus_capucinus
ENSLOCG00000002003	snrpd1	100	97.436	ENSCATG00000039978	SNRPD1	98	97.436	Cercocebus_atys
ENSLOCG00000002003	snrpd1	100	97.436	ENSCLAG00000008691	SNRPD1	98	97.436	Chinchilla_lanigera
ENSLOCG00000002003	snrpd1	100	97.436	ENSCSAG00000017654	SNRPD1	98	97.436	Chlorocebus_sabaeus
ENSLOCG00000002003	snrpd1	100	97.436	ENSCPBG00000023143	SNRPD1	98	97.436	Chrysemys_picta_bellii
ENSLOCG00000002003	snrpd1	72	88.095	ENSCING00000024100	-	67	88.095	Ciona_intestinalis
ENSLOCG00000002003	snrpd1	73	85.882	ENSCSAVG00000004578	-	68	85.882	Ciona_savignyi
ENSLOCG00000002003	snrpd1	80	73.404	ENSCGRG00001009945	-	83	73.404	Cricetulus_griseus_chok1gshd
ENSLOCG00000002003	snrpd1	100	97.436	ENSCGRG00001021055	-	98	97.436	Cricetulus_griseus_chok1gshd
ENSLOCG00000002003	snrpd1	80	73.404	ENSCGRG00000006224	-	83	73.404	Cricetulus_griseus_crigri
ENSLOCG00000002003	snrpd1	100	97.436	ENSCGRG00000000490	-	98	97.436	Cricetulus_griseus_crigri
ENSLOCG00000002003	snrpd1	79	93.548	ENSCSEG00000018141	snrpd1	79	93.617	Cynoglossus_semilaevis
ENSLOCG00000002003	snrpd1	94	95.455	ENSCVAG00000000534	snrpd1	92	95.455	Cyprinodon_variegatus
ENSLOCG00000002003	snrpd1	100	96.581	ENSDARG00000011648	snrpd1	98	96.581	Danio_rerio
ENSLOCG00000002003	snrpd1	100	97.436	ENSDNOG00000040310	SNRPD1	98	97.436	Dasypus_novemcinctus
ENSLOCG00000002003	snrpd1	100	97.436	ENSDORG00000008349	Snrpd1	98	97.436	Dipodomys_ordii
ENSLOCG00000002003	snrpd1	79	81.522	FBgn0261933	SmD1	74	81.522	Drosophila_melanogaster
ENSLOCG00000002003	snrpd1	75	97.727	ENSETEG00000011689	SNRPD1	74	97.727	Echinops_telfairi
ENSLOCG00000002003	snrpd1	94	90.909	ENSEBUG00000003170	snrpd1	92	90.909	Eptatretus_burgeri
ENSLOCG00000002003	snrpd1	96	98.214	ENSEASG00005002433	SNRPD1	100	98.214	Equus_asinus_asinus
ENSLOCG00000002003	snrpd1	96	98.214	ENSECAG00000014373	SNRPD1	100	98.214	Equus_caballus
ENSLOCG00000002003	snrpd1	76	97.753	ENSEEUG00000004987	SNRPD1	100	97.753	Erinaceus_europaeus
ENSLOCG00000002003	snrpd1	93	84.404	ENSELUG00000000088	snrpd1	77	94.565	Esox_lucius
ENSLOCG00000002003	snrpd1	100	97.436	ENSFCAG00000012352	SNRPD1	98	97.436	Felis_catus
ENSLOCG00000002003	snrpd1	96	98.214	ENSFALG00000002646	SNRPD1	100	98.214	Ficedula_albicollis
ENSLOCG00000002003	snrpd1	100	96.581	ENSGMOG00000015607	snrpd1	98	96.581	Gadus_morhua
ENSLOCG00000002003	snrpd1	100	97.436	ENSGALG00000041334	SNRPD1	98	97.436	Gallus_gallus
ENSLOCG00000002003	snrpd1	94	95.455	ENSGAFG00000011171	snrpd1	92	95.455	Gambusia_affinis
ENSLOCG00000002003	snrpd1	100	96.581	ENSGACG00000005201	SNRPD1	98	96.581	Gasterosteus_aculeatus
ENSLOCG00000002003	snrpd1	100	97.436	ENSGAGG00000011197	SNRPD1	98	97.436	Gopherus_agassizii
ENSLOCG00000002003	snrpd1	80	91.489	ENSGGOG00000026706	-	78	91.489	Gorilla_gorilla
ENSLOCG00000002003	snrpd1	100	97.436	ENSGGOG00000041053	SNRPD1	98	97.436	Gorilla_gorilla
ENSLOCG00000002003	snrpd1	94	95.455	ENSHBUG00000003236	snrpd1	92	95.455	Haplochromis_burtoni
ENSLOCG00000002003	snrpd1	100	97.436	ENSHGLG00000007152	SNRPD1	98	97.436	Heterocephalus_glaber_female
ENSLOCG00000002003	snrpd1	100	97.436	ENSHGLG00100008618	SNRPD1	98	97.436	Heterocephalus_glaber_male
ENSLOCG00000002003	snrpd1	98	96.522	ENSIPUG00000003576	snrpd1	92	95.455	Ictalurus_punctatus
ENSLOCG00000002003	snrpd1	100	97.436	ENSSTOG00000000485	SNRPD1	98	97.436	Ictidomys_tridecemlineatus
ENSLOCG00000002003	snrpd1	100	97.436	ENSJJAG00000017698	Snrpd1	98	97.436	Jaculus_jaculus
ENSLOCG00000002003	snrpd1	94	95.455	ENSKMAG00000005987	snrpd1	92	95.455	Kryptolebias_marmoratus
ENSLOCG00000002003	snrpd1	94	95.455	ENSLBEG00000003327	snrpd1	92	95.455	Labrus_bergylta
ENSLOCG00000002003	snrpd1	100	97.436	ENSLACG00000001955	SNRPD1	98	97.436	Latimeria_chalumnae
ENSLOCG00000002003	snrpd1	100	97.436	ENSLAFG00000005819	SNRPD1	99	97.436	Loxodonta_africana
ENSLOCG00000002003	snrpd1	100	97.436	ENSMFAG00000042080	SNRPD1	98	97.436	Macaca_fascicularis
ENSLOCG00000002003	snrpd1	97	98.246	ENSMMUG00000003992	SNRPD1	97	98.246	Macaca_mulatta
ENSLOCG00000002003	snrpd1	100	97.436	ENSMNEG00000041296	SNRPD1	98	97.436	Macaca_nemestrina
ENSLOCG00000002003	snrpd1	100	97.436	ENSMLEG00000028659	SNRPD1	98	97.436	Mandrillus_leucophaeus
ENSLOCG00000002003	snrpd1	94	95.455	ENSMAMG00000012971	snrpd1	92	95.455	Mastacembelus_armatus
ENSLOCG00000002003	snrpd1	94	95.455	ENSMZEG00005004685	snrpd1	92	95.455	Maylandia_zebra
ENSLOCG00000002003	snrpd1	100	95.833	ENSMGAG00000011598	SNRPD1	99	95.833	Meleagris_gallopavo
ENSLOCG00000002003	snrpd1	77	97.778	ENSMAUG00000006829	-	59	97.778	Mesocricetus_auratus
ENSLOCG00000002003	snrpd1	80	80.851	ENSMAUG00000016467	-	85	80.851	Mesocricetus_auratus
ENSLOCG00000002003	snrpd1	80	80.851	ENSMAUG00000016502	-	85	80.851	Mesocricetus_auratus
ENSLOCG00000002003	snrpd1	100	97.436	ENSMICG00000044066	SNRPD1	98	97.436	Microcebus_murinus
ENSLOCG00000002003	snrpd1	100	97.436	ENSMOCG00000017367	Snrpd1	98	97.436	Microtus_ochrogaster
ENSLOCG00000002003	snrpd1	94	95.455	ENSMMOG00000019089	snrpd1	92	95.455	Mola_mola
ENSLOCG00000002003	snrpd1	100	97.436	ENSMODG00000021487	SNRPD1	98	98.246	Monodelphis_domestica
ENSLOCG00000002003	snrpd1	94	95.455	ENSMALG00000014459	snrpd1	92	95.455	Monopterus_albus
ENSLOCG00000002003	snrpd1	100	97.436	MGP_CAROLIEiJ_G0021994	Snrpd1	98	97.436	Mus_caroli
ENSLOCG00000002003	snrpd1	100	97.436	ENSMUSG00000002477	Snrpd1	98	97.436	Mus_musculus
ENSLOCG00000002003	snrpd1	100	97.436	MGP_PahariEiJ_G0018731	Snrpd1	98	97.436	Mus_pahari
ENSLOCG00000002003	snrpd1	100	97.436	MGP_SPRETEiJ_G0022910	Snrpd1	98	97.436	Mus_spretus
ENSLOCG00000002003	snrpd1	100	96.581	ENSMPUG00000020041	-	98	96.581	Mustela_putorius_furo
ENSLOCG00000002003	snrpd1	100	96.581	ENSMPUG00000005567	-	100	96.581	Mustela_putorius_furo
ENSLOCG00000002003	snrpd1	99	95.690	ENSMLUG00000009124	SNRPD1	90	95.690	Myotis_lucifugus
ENSLOCG00000002003	snrpd1	100	97.436	ENSNGAG00000023946	Snrpd1	98	97.436	Nannospalax_galili
ENSLOCG00000002003	snrpd1	79	94.565	ENSNBRG00000012119	snrpd1	76	94.565	Neolamprologus_brichardi
ENSLOCG00000002003	snrpd1	100	94.872	ENSNLEG00000031430	SNRPD1	98	94.872	Nomascus_leucogenys
ENSLOCG00000002003	snrpd1	100	97.436	ENSODEG00000005764	SNRPD1	98	97.436	Octodon_degus
ENSLOCG00000002003	snrpd1	94	95.455	ENSONIG00000002486	snrpd1	92	95.455	Oreochromis_niloticus
ENSLOCG00000002003	snrpd1	84	86.735	ENSOANG00000004638	-	82	86.735	Ornithorhynchus_anatinus
ENSLOCG00000002003	snrpd1	100	96.581	ENSOCUG00000014399	-	98	96.581	Oryctolagus_cuniculus
ENSLOCG00000002003	snrpd1	100	96.581	ENSOCUG00000023761	-	100	96.581	Oryctolagus_cuniculus
ENSLOCG00000002003	snrpd1	96	96.429	ENSORLG00000012516	snrpd1	100	96.429	Oryzias_latipes
ENSLOCG00000002003	snrpd1	94	95.455	ENSORLG00020005743	snrpd1	92	95.455	Oryzias_latipes_hni
ENSLOCG00000002003	snrpd1	94	95.455	ENSORLG00015013402	snrpd1	92	95.455	Oryzias_latipes_hsok
ENSLOCG00000002003	snrpd1	94	95.455	ENSOMEG00000011571	snrpd1	92	95.455	Oryzias_melastigma
ENSLOCG00000002003	snrpd1	100	97.436	ENSOGAG00000007833	SNRPD1	98	97.436	Otolemur_garnettii
ENSLOCG00000002003	snrpd1	100	92.308	ENSOARG00000003413	-	83	92.308	Ovis_aries
ENSLOCG00000002003	snrpd1	100	97.436	ENSPPAG00000042593	SNRPD1	98	97.436	Pan_paniscus
ENSLOCG00000002003	snrpd1	94	70.000	ENSPPRG00000005009	-	90	70.000	Panthera_pardus
ENSLOCG00000002003	snrpd1	100	97.436	ENSPPRG00000002399	SNRPD1	98	97.436	Panthera_pardus
ENSLOCG00000002003	snrpd1	97	98.246	ENSPTIG00000013206	SNRPD1	100	98.246	Panthera_tigris_altaica
ENSLOCG00000002003	snrpd1	100	97.436	ENSPTRG00000009909	SNRPD1	98	97.436	Pan_troglodytes
ENSLOCG00000002003	snrpd1	85	91.000	ENSPTRG00000050159	-	85	91.000	Pan_troglodytes
ENSLOCG00000002003	snrpd1	100	97.436	ENSPANG00000023478	SNRPD1	98	97.436	Papio_anubis
ENSLOCG00000002003	snrpd1	90	95.238	ENSPKIG00000021610	snrpd1	94	95.238	Paramormyrops_kingsleyae
ENSLOCG00000002003	snrpd1	100	96.581	ENSPKIG00000003985	SNRPD1	98	96.581	Paramormyrops_kingsleyae
ENSLOCG00000002003	snrpd1	94	95.455	ENSPMGG00000001862	snrpd1	92	95.455	Periophthalmus_magnuspinnatus
ENSLOCG00000002003	snrpd1	100	97.436	ENSPEMG00000014773	-	98	97.436	Peromyscus_maniculatus_bairdii
ENSLOCG00000002003	snrpd1	85	81.373	ENSPMAG00000003938	-	84	81.373	Petromyzon_marinus
ENSLOCG00000002003	snrpd1	100	97.436	ENSPCIG00000020320	SNRPD1	100	98.214	Phascolarctos_cinereus
ENSLOCG00000002003	snrpd1	80	94.681	ENSPFOG00000012448	SNRPD1	83	94.681	Poecilia_formosa
ENSLOCG00000002003	snrpd1	80	94.681	ENSPLAG00000006738	snrpd1	83	94.681	Poecilia_latipinna
ENSLOCG00000002003	snrpd1	80	94.681	ENSPMEG00000021942	snrpd1	83	94.681	Poecilia_mexicana
ENSLOCG00000002003	snrpd1	94	95.455	ENSPREG00000007094	snrpd1	92	95.455	Poecilia_reticulata
ENSLOCG00000002003	snrpd1	100	97.436	ENSPPYG00000025874	SNRPD1	98	97.436	Pongo_abelii
ENSLOCG00000002003	snrpd1	100	97.436	ENSPCOG00000013327	SNRPD1	98	97.436	Propithecus_coquereli
ENSLOCG00000002003	snrpd1	100	97.436	ENSPVAG00000005511	SNRPD1	79	97.436	Pteropus_vampyrus
ENSLOCG00000002003	snrpd1	94	95.455	ENSPNAG00000017824	snrpd1	92	95.455	Pygocentrus_nattereri
ENSLOCG00000002003	snrpd1	100	97.436	ENSRNOG00000013714	Snrpd1	98	97.436	Rattus_norvegicus
ENSLOCG00000002003	snrpd1	100	97.436	ENSRBIG00000022996	SNRPD1	98	97.436	Rhinopithecus_bieti
ENSLOCG00000002003	snrpd1	100	97.436	ENSRROG00000027640	SNRPD1	98	97.436	Rhinopithecus_roxellana
ENSLOCG00000002003	snrpd1	100	97.436	ENSSBOG00000020998	SNRPD1	98	97.436	Saimiri_boliviensis_boliviensis
ENSLOCG00000002003	snrpd1	100	97.436	ENSSHAG00000011791	SNRPD1	98	97.436	Sarcophilus_harrisii
ENSLOCG00000002003	snrpd1	94	94.545	ENSSFOG00015008809	-	92	94.545	Scleropages_formosus
ENSLOCG00000002003	snrpd1	94	94.545	ENSSFOG00015022253	-	92	94.545	Scleropages_formosus
ENSLOCG00000002003	snrpd1	94	94.545	ENSSMAG00000008765	snrpd1	94	95.238	Scophthalmus_maximus
ENSLOCG00000002003	snrpd1	93	94.495	ENSSDUG00000010521	snrpd1	92	94.495	Seriola_dumerili
ENSLOCG00000002003	snrpd1	94	95.455	ENSSLDG00000011858	snrpd1	92	95.455	Seriola_lalandi_dorsalis
ENSLOCG00000002003	snrpd1	57	98.507	ENSSARG00000004271	SNRPD1	100	98.507	Sorex_araneus
ENSLOCG00000002003	snrpd1	100	97.436	ENSSPUG00000002824	SNRPD1	98	97.436	Sphenodon_punctatus
ENSLOCG00000002003	snrpd1	96	96.429	ENSSPAG00000015229	snrpd1	100	96.429	Stegastes_partitus
ENSLOCG00000002003	snrpd1	100	97.436	ENSSSCG00000003701	SNRPD1	100	98.214	Sus_scrofa
ENSLOCG00000002003	snrpd1	100	96.581	ENSTGUG00000005095	SNRPD1	98	96.581	Taeniopygia_guttata
ENSLOCG00000002003	snrpd1	96	96.429	ENSTRUG00000008977	snrpd1	100	96.429	Takifugu_rubripes
ENSLOCG00000002003	snrpd1	82	91.667	ENSTNIG00000001224	snrpd1	92	91.667	Tetraodon_nigroviridis
ENSLOCG00000002003	snrpd1	75	97.727	ENSTBEG00000013776	SNRPD1	100	97.727	Tupaia_belangeri
ENSLOCG00000002003	snrpd1	98	98.261	ENSTTRG00000002654	SNRPD1	100	98.261	Tursiops_truncatus
ENSLOCG00000002003	snrpd1	97	98.246	ENSUAMG00000013431	SNRPD1	97	98.246	Ursus_americanus
ENSLOCG00000002003	snrpd1	100	97.436	ENSUMAG00000019740	SNRPD1	98	97.436	Ursus_maritimus
ENSLOCG00000002003	snrpd1	100	97.436	ENSVPAG00000010056	SNRPD1	79	97.436	Vicugna_pacos
ENSLOCG00000002003	snrpd1	96	98.214	ENSVVUG00000004009	SNRPD1	100	98.214	Vulpes_vulpes
ENSLOCG00000002003	snrpd1	94	95.455	ENSXETG00000027354	snrpd1	92	95.455	Xenopus_tropicalis
ENSLOCG00000002003	snrpd1	94	95.455	ENSXCOG00000020108	snrpd1	92	95.455	Xiphophorus_couchianus
ENSLOCG00000002003	snrpd1	94	95.455	ENSXMAG00000003368	snrpd1	92	95.455	Xiphophorus_maculatus