EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000002010 (Gene tree)
Gene ID: 102687700
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 15778 bases
Position: chrLG10:1060125-1075902
Accession: 102687700
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000002343	EST1	PF10374.9	8.5e-26	1	1
ENSLOCP00000002343	EST1_DNA_bind	PF10373.9	1.5e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000002348	-	3996	XM_006634628	ENSLOCP00000002343	1200 (aa)	-	W5M1T5

Gene Model

Click here to download ENSLOCG00000002010's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000002010's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000002010	smg7	99	67.809	ENSG00000116698	SMG7	88	92.683	Homo_sapiens
ENSLOCG00000002010	smg7	89	76.621	ENSAPOG00000009611	smg7	95	76.621	Acanthochromis_polyacanthus
ENSLOCG00000002010	smg7	99	66.196	ENSAMEG00000002357	SMG7	100	68.557	Ailuropoda_melanoleuca
ENSLOCG00000002010	smg7	97	64.831	ENSACIG00000015152	smg7	100	65.538	Amphilophus_citrinellus
ENSLOCG00000002010	smg7	99	71.826	ENSAOCG00000013538	smg7	99	72.072	Amphiprion_ocellaris
ENSLOCG00000002010	smg7	99	71.686	ENSAPEG00000007851	smg7	99	71.931	Amphiprion_percula
ENSLOCG00000002010	smg7	99	68.460	ENSATEG00000006931	smg7	99	68.408	Anabas_testudineus
ENSLOCG00000002010	smg7	99	66.945	ENSAPLG00000015811	SMG7	99	68.364	Anas_platyrhynchos
ENSLOCG00000002010	smg7	99	69.850	ENSACAG00000014989	SMG7	99	70.432	Anolis_carolinensis
ENSLOCG00000002010	smg7	99	70.175	ENSANAG00000028114	SMG7	86	94.340	Aotus_nancymaae
ENSLOCG00000002010	smg7	99	71.031	ENSACLG00000022079	smg7	99	71.029	Astatotilapia_calliptera
ENSLOCG00000002010	smg7	99	73.960	ENSAMXG00000020809	smg7	99	74.336	Astyanax_mexicanus
ENSLOCG00000002010	smg7	99	67.224	ENSBTAG00000008003	SMG7	99	66.169	Bos_taurus
ENSLOCG00000002010	smg7	99	70.241	ENSCJAG00000005135	SMG7	88	93.789	Callithrix_jacchus
ENSLOCG00000002010	smg7	99	67.084	ENSCAFG00000013276	SMG7	97	67.140	Canis_familiaris
ENSLOCG00000002010	smg7	99	69.154	ENSCAFG00020015475	SMG7	89	93.252	Canis_lupus_dingo
ENSLOCG00000002010	smg7	99	67.500	ENSCHIG00000018192	SMG7	99	67.500	Capra_hircus
ENSLOCG00000002010	smg7	99	67.559	ENSTSYG00000002667	SMG7	80	95.513	Carlito_syrichta
ENSLOCG00000002010	smg7	99	67.251	ENSCPOG00000008906	SMG7	99	66.639	Cavia_porcellus
ENSLOCG00000002010	smg7	99	67.164	ENSCCAG00000028596	SMG7	86	94.340	Cebus_capucinus
ENSLOCG00000002010	smg7	99	67.893	ENSCATG00000011063	SMG7	86	94.340	Cercocebus_atys
ENSLOCG00000002010	smg7	99	67.893	ENSCLAG00000010751	SMG7	99	67.475	Chinchilla_lanigera
ENSLOCG00000002010	smg7	99	67.809	ENSCSAG00000012654	SMG7	97	67.559	Chlorocebus_sabaeus
ENSLOCG00000002010	smg7	87	68.254	ENSCHOG00000010522	SMG7	89	68.254	Choloepus_hoffmanni
ENSLOCG00000002010	smg7	99	71.870	ENSCPBG00000015724	SMG7	99	71.285	Chrysemys_picta_bellii
ENSLOCG00000002010	smg7	99	67.056	ENSCANG00000015680	SMG7	86	94.340	Colobus_angolensis_palliatus
ENSLOCG00000002010	smg7	99	67.475	ENSCGRG00001013705	Smg7	99	67.054	Cricetulus_griseus_chok1gshd
ENSLOCG00000002010	smg7	99	67.475	ENSCGRG00000018401	Smg7	99	67.308	Cricetulus_griseus_crigri
ENSLOCG00000002010	smg7	98	68.204	ENSCVAG00000011842	smg7	100	68.369	Cyprinodon_variegatus
ENSLOCG00000002010	smg7	99	72.720	ENSDARG00000060767	smg7	99	73.737	Danio_rerio
ENSLOCG00000002010	smg7	99	67.140	ENSDORG00000007331	Smg7	99	67.057	Dipodomys_ordii
ENSLOCG00000002010	smg7	97	66.524	ENSETEG00000002654	SMG7	99	66.438	Echinops_telfairi
ENSLOCG00000002010	smg7	99	67.726	ENSEASG00005006524	SMG7	99	67.303	Equus_asinus_asinus
ENSLOCG00000002010	smg7	94	84.498	ENSECAG00000004313	SMG7	97	84.290	Equus_caballus
ENSLOCG00000002010	smg7	97	66.125	ENSEEUG00000002024	SMG7	94	65.697	Erinaceus_europaeus
ENSLOCG00000002010	smg7	99	73.317	ENSELUG00000010293	smg7	99	73.481	Esox_lucius
ENSLOCG00000002010	smg7	93	77.273	ENSFCAG00000010900	SMG7	99	66.971	Felis_catus
ENSLOCG00000002010	smg7	98	68.913	ENSFALG00000003047	SMG7	100	68.997	Ficedula_albicollis
ENSLOCG00000002010	smg7	99	67.364	ENSFDAG00000012121	SMG7	99	67.032	Fukomys_damarensis
ENSLOCG00000002010	smg7	99	66.227	ENSFHEG00000011073	smg7	99	66.474	Fundulus_heteroclitus
ENSLOCG00000002010	smg7	89	71.078	ENSGMOG00000004916	smg7	91	71.078	Gadus_morhua
ENSLOCG00000002010	smg7	99	64.996	ENSGAFG00000019000	smg7	99	65.489	Gambusia_affinis
ENSLOCG00000002010	smg7	97	65.827	ENSGACG00000001634	smg7	99	65.659	Gasterosteus_aculeatus
ENSLOCG00000002010	smg7	99	67.809	ENSGGOG00000002342	SMG7	85	92.121	Gorilla_gorilla
ENSLOCG00000002010	smg7	99	71.029	ENSHBUG00000003726	smg7	99	71.193	Haplochromis_burtoni
ENSLOCG00000002010	smg7	99	66.584	ENSHGLG00000009353	SMG7	100	67.032	Heterocephalus_glaber_female
ENSLOCG00000002010	smg7	99	61.897	ENSHGLG00100004878	-	99	61.730	Heterocephalus_glaber_male
ENSLOCG00000002010	smg7	99	66.501	ENSHGLG00100009637	-	100	65.599	Heterocephalus_glaber_male
ENSLOCG00000002010	smg7	99	72.250	ENSIPUG00000016997	smg7	99	72.342	Ictalurus_punctatus
ENSLOCG00000002010	smg7	99	67.977	ENSSTOG00000000401	SMG7	99	68.060	Ictidomys_tridecemlineatus
ENSLOCG00000002010	smg7	99	67.276	ENSJJAG00000012351	Smg7	99	67.193	Jaculus_jaculus
ENSLOCG00000002010	smg7	90	75.362	ENSKMAG00000004900	smg7	98	75.362	Kryptolebias_marmoratus
ENSLOCG00000002010	smg7	99	65.029	ENSLBEG00000002983	smg7	99	67.243	Labrus_bergylta
ENSLOCG00000002010	smg7	61	53.836	ENSLBEG00000005220	-	75	61.692	Labrus_bergylta
ENSLOCG00000002010	smg7	99	73.924	ENSLACG00000000972	SMG7	99	74.007	Latimeria_chalumnae
ENSLOCG00000002010	smg7	99	68.060	ENSLAFG00000008186	SMG7	99	67.893	Loxodonta_africana
ENSLOCG00000002010	smg7	99	67.977	ENSMFAG00000031653	SMG7	86	94.340	Macaca_fascicularis
ENSLOCG00000002010	smg7	99	69.154	ENSMMUG00000018458	SMG7	100	68.905	Macaca_mulatta
ENSLOCG00000002010	smg7	99	66.915	ENSMNEG00000034798	SMG7	86	94.340	Macaca_nemestrina
ENSLOCG00000002010	smg7	99	67.893	ENSMLEG00000037170	SMG7	100	69.244	Mandrillus_leucophaeus
ENSLOCG00000002010	smg7	88	69.593	ENSMAMG00000018733	smg7	85	69.501	Mastacembelus_armatus
ENSLOCG00000002010	smg7	99	71.277	ENSMZEG00005015247	smg7	99	71.124	Maylandia_zebra
ENSLOCG00000002010	smg7	76	69.438	ENSMGAG00000001561	SMG7	99	68.254	Meleagris_gallopavo
ENSLOCG00000002010	smg7	99	67.726	ENSMAUG00000019484	Smg7	99	67.391	Mesocricetus_auratus
ENSLOCG00000002010	smg7	99	69.000	ENSMICG00000007145	SMG7	83	94.340	Microcebus_murinus
ENSLOCG00000002010	smg7	99	67.308	ENSMOCG00000020748	Smg7	99	67.057	Microtus_ochrogaster
ENSLOCG00000002010	smg7	92	66.606	ENSMODG00000007139	SMG7	98	66.426	Monodelphis_domestica
ENSLOCG00000002010	smg7	99	71.299	ENSMALG00000000061	smg7	93	71.546	Monopterus_albus
ENSLOCG00000002010	smg7	99	67.923	MGP_CAROLIEiJ_G0014704	Smg7	99	67.672	Mus_caroli
ENSLOCG00000002010	smg7	99	67.726	ENSMUSG00000042772	Smg7	99	67.308	Mus_musculus
ENSLOCG00000002010	smg7	99	67.809	MGP_PahariEiJ_G0027940	Smg7	99	67.391	Mus_pahari
ENSLOCG00000002010	smg7	99	67.809	MGP_SPRETEiJ_G0015511	Smg7	99	67.391	Mus_spretus
ENSLOCG00000002010	smg7	98	67.173	ENSMPUG00000011732	SMG7	97	67.116	Mustela_putorius_furo
ENSLOCG00000002010	smg7	99	67.083	ENSMLUG00000015417	SMG7	99	66.917	Myotis_lucifugus
ENSLOCG00000002010	smg7	99	67.642	ENSNGAG00000009836	Smg7	99	67.057	Nannospalax_galili
ENSLOCG00000002010	smg7	98	60.198	ENSNBRG00000024343	smg7	99	59.354	Neolamprologus_brichardi
ENSLOCG00000002010	smg7	98	69.958	ENSNLEG00000018018	SMG7	100	69.330	Nomascus_leucogenys
ENSLOCG00000002010	smg7	71	65.909	ENSMEUG00000004681	SMG7	73	65.909	Notamacropus_eugenii
ENSLOCG00000002010	smg7	96	62.123	ENSOPRG00000013942	SMG7	96	62.176	Ochotona_princeps
ENSLOCG00000002010	smg7	99	67.809	ENSODEG00000010390	SMG7	99	67.391	Octodon_degus
ENSLOCG00000002010	smg7	99	67.621	ENSONIG00000000277	smg7	99	67.681	Oreochromis_niloticus
ENSLOCG00000002010	smg7	98	66.946	ENSOANG00000000994	SMG7	100	67.311	Ornithorhynchus_anatinus
ENSLOCG00000002010	smg7	99	65.091	ENSOCUG00000005887	SMG7	93	64.925	Oryctolagus_cuniculus
ENSLOCG00000002010	smg7	99	67.440	ENSORLG00000007314	smg7	99	68.517	Oryzias_latipes
ENSLOCG00000002010	smg7	99	67.357	ENSORLG00020015779	smg7	99	68.434	Oryzias_latipes_hni
ENSLOCG00000002010	smg7	99	68.268	ENSORLG00015012289	smg7	99	68.351	Oryzias_latipes_hsok
ENSLOCG00000002010	smg7	99	68.351	ENSOMEG00000002328	smg7	99	68.268	Oryzias_melastigma
ENSLOCG00000002010	smg7	96	66.523	ENSOGAG00000003107	SMG7	93	66.178	Otolemur_garnettii
ENSLOCG00000002010	smg7	99	67.559	ENSOARG00000001352	SMG7	97	67.559	Ovis_aries
ENSLOCG00000002010	smg7	99	66.998	ENSPPAG00000031619	SMG7	88	93.827	Pan_paniscus
ENSLOCG00000002010	smg7	99	67.531	ENSPPRG00000011222	SMG7	99	66.418	Panthera_pardus
ENSLOCG00000002010	smg7	96	69.013	ENSPTIG00000007242	SMG7	100	68.814	Panthera_tigris_altaica
ENSLOCG00000002010	smg7	99	66.998	ENSPTRG00000001764	SMG7	86	94.340	Pan_troglodytes
ENSLOCG00000002010	smg7	99	67.893	ENSPANG00000004520	SMG7	99	66.667	Papio_anubis
ENSLOCG00000002010	smg7	93	76.733	ENSPKIG00000007242	smg7	99	76.733	Paramormyrops_kingsleyae
ENSLOCG00000002010	smg7	99	69.289	ENSPSIG00000012201	SMG7	99	69.205	Pelodiscus_sinensis
ENSLOCG00000002010	smg7	59	51.948	ENSPMGG00000021833	smg7	92	54.930	Periophthalmus_magnuspinnatus
ENSLOCG00000002010	smg7	99	66.890	ENSPEMG00000011315	Smg7	99	66.973	Peromyscus_maniculatus_bairdii
ENSLOCG00000002010	smg7	93	77.778	ENSPCIG00000003786	SMG7	91	91.515	Phascolarctos_cinereus
ENSLOCG00000002010	smg7	99	68.473	ENSPFOG00000019219	smg7	99	68.555	Poecilia_formosa
ENSLOCG00000002010	smg7	99	65.571	ENSPLAG00000001446	smg7	99	65.653	Poecilia_latipinna
ENSLOCG00000002010	smg7	96	64.661	ENSPMEG00000005218	smg7	99	64.746	Poecilia_mexicana
ENSLOCG00000002010	smg7	87	65.005	ENSPREG00000019039	smg7	91	65.695	Poecilia_reticulata
ENSLOCG00000002010	smg7	99	66.998	ENSPPYG00000000427	SMG7	99	66.750	Pongo_abelii
ENSLOCG00000002010	smg7	84	69.147	ENSPCAG00000008360	SMG7	86	69.147	Procavia_capensis
ENSLOCG00000002010	smg7	99	67.777	ENSPCOG00000011996	SMG7	78	94.340	Propithecus_coquereli
ENSLOCG00000002010	smg7	91	64.882	ENSPVAG00000000851	SMG7	89	64.882	Pteropus_vampyrus
ENSLOCG00000002010	smg7	99	71.146	ENSPNYG00000007643	smg7	99	71.228	Pundamilia_nyererei
ENSLOCG00000002010	smg7	93	80.597	ENSPNAG00000011374	smg7	99	80.597	Pygocentrus_nattereri
ENSLOCG00000002010	smg7	99	68.254	ENSRNOG00000027962	Smg7	100	68.755	Rattus_norvegicus
ENSLOCG00000002010	smg7	99	67.893	ENSRBIG00000036316	SMG7	100	69.244	Rhinopithecus_bieti
ENSLOCG00000002010	smg7	99	67.893	ENSRROG00000035719	SMG7	100	69.244	Rhinopithecus_roxellana
ENSLOCG00000002010	smg7	99	67.718	ENSSBOG00000023454	SMG7	88	92.683	Saimiri_boliviensis_boliviensis
ENSLOCG00000002010	smg7	99	67.559	ENSSHAG00000013147	SMG7	100	67.026	Sarcophilus_harrisii
ENSLOCG00000002010	smg7	99	75.167	ENSSFOG00015017252	smg7	99	75.354	Scleropages_formosus
ENSLOCG00000002010	smg7	99	69.752	ENSSMAG00000006067	smg7	99	70.355	Scophthalmus_maximus
ENSLOCG00000002010	smg7	96	76.126	ENSSDUG00000017543	smg7	99	68.267	Seriola_dumerili
ENSLOCG00000002010	smg7	99	68.170	ENSSPUG00000002064	SMG7	99	67.753	Sphenodon_punctatus
ENSLOCG00000002010	smg7	98	67.980	ENSSPAG00000008733	smg7	98	64.465	Stegastes_partitus
ENSLOCG00000002010	smg7	99	67.559	ENSSSCG00000015558	SMG7	99	67.137	Sus_scrofa
ENSLOCG00000002010	smg7	99	66.473	ENSTGUG00000003928	SMG7	100	67.917	Taeniopygia_guttata
ENSLOCG00000002010	smg7	99	63.880	ENSTNIG00000002802	smg7	99	63.452	Tetraodon_nigroviridis
ENSLOCG00000002010	smg7	77	69.714	ENSTBEG00000003220	SMG7	75	69.714	Tupaia_belangeri
ENSLOCG00000002010	smg7	96	66.437	ENSTTRG00000014778	SMG7	94	66.350	Tursiops_truncatus
ENSLOCG00000002010	smg7	96	63.402	ENSUAMG00000017473	SMG7	100	63.457	Ursus_americanus
ENSLOCG00000002010	smg7	96	66.495	ENSUMAG00000016389	SMG7	100	67.068	Ursus_maritimus
ENSLOCG00000002010	smg7	93	75.758	ENSVVUG00000008976	SMG7	99	66.888	Vulpes_vulpes
ENSLOCG00000002010	smg7	99	59.027	ENSXETG00000012528	smg7	99	59.226	Xenopus_tropicalis
ENSLOCG00000002010	smg7	99	65.404	ENSXMAG00000007123	smg7	99	65.568	Xiphophorus_maculatus