EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000002025 (Gene tree)
Gene ID: 102683886
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 7871 bases
Position: chrLG19:3779911-3787781
Accession: 102683886
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000002347	LSM	PF01423.22	6.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000002353	-	2304	XM_006639946	ENSLOCP00000002347	141 (aa)	XP_015221064	W5M1T9

Gene Model

Click here to download ENSLOCG00000002025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000002025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000002025	lsm4	77	33.028	ENSLOCG00000006978	snrpd3	79	31.579
ENSLOCG00000002025	lsm4	69	32.000	ENSLOCG00000005228	si:ch73-14h10.2	100	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000002025	lsm4	62	97.727	ENSG00000130520	LSM4	93	83.721	Homo_sapiens
ENSLOCG00000002025	lsm4	100	82.895	ENSAPOG00000005643	lsm4	84	91.406	Acanthochromis_polyacanthus
ENSLOCG00000002025	lsm4	62	97.701	ENSAMEG00000011162	LSM4	88	83.594	Ailuropoda_melanoleuca
ENSLOCG00000002025	lsm4	100	84.564	ENSAOCG00000006414	lsm4	86	91.406	Amphiprion_ocellaris
ENSLOCG00000002025	lsm4	100	79.866	ENSAPEG00000006238	lsm4	85	91.406	Amphiprion_percula
ENSLOCG00000002025	lsm4	100	80.392	ENSATEG00000016559	lsm4	84	91.406	Anabas_testudineus
ENSLOCG00000002025	lsm4	62	97.727	ENSANAG00000034659	LSM4	93	83.721	Aotus_nancymaae
ENSLOCG00000002025	lsm4	100	83.784	ENSACLG00000022738	lsm4	86	89.062	Astatotilapia_calliptera
ENSLOCG00000002025	lsm4	100	94.366	ENSAMXG00000016932	lsm4	90	96.094	Astyanax_mexicanus
ENSLOCG00000002025	lsm4	62	97.727	ENSBTAG00000008578	LSM4	93	83.721	Bos_taurus
ENSLOCG00000002025	lsm4	59	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSLOCG00000002025	lsm4	62	97.727	ENSCJAG00000014171	LSM4	93	83.721	Callithrix_jacchus
ENSLOCG00000002025	lsm4	62	97.727	ENSCAFG00000014900	LSM4	84	83.721	Canis_familiaris
ENSLOCG00000002025	lsm4	62	97.727	ENSCAFG00020012137	LSM4	93	83.721	Canis_lupus_dingo
ENSLOCG00000002025	lsm4	62	97.701	ENSCHIG00000010928	LSM4	85	83.594	Capra_hircus
ENSLOCG00000002025	lsm4	62	96.591	ENSTSYG00000030906	LSM4	93	82.946	Carlito_syrichta
ENSLOCG00000002025	lsm4	62	96.591	ENSCAPG00000014140	LSM4	93	82.946	Cavia_aperea
ENSLOCG00000002025	lsm4	62	96.591	ENSCPOG00000024117	LSM4	93	82.946	Cavia_porcellus
ENSLOCG00000002025	lsm4	62	97.727	ENSCCAG00000036308	LSM4	93	83.721	Cebus_capucinus
ENSLOCG00000002025	lsm4	62	97.727	ENSCATG00000029311	LSM4	93	83.721	Cercocebus_atys
ENSLOCG00000002025	lsm4	62	97.727	ENSCLAG00000010828	LSM4	93	81.395	Chinchilla_lanigera
ENSLOCG00000002025	lsm4	62	97.727	ENSCSAG00000005370	LSM4	93	83.721	Chlorocebus_sabaeus
ENSLOCG00000002025	lsm4	94	93.985	ENSCPBG00000012925	LSM4	96	93.985	Chrysemys_picta_bellii
ENSLOCG00000002025	lsm4	61	94.186	ENSCING00000007519	-	72	93.478	Ciona_intestinalis
ENSLOCG00000002025	lsm4	61	94.186	ENSCSAVG00000008596	-	74	93.478	Ciona_savignyi
ENSLOCG00000002025	lsm4	62	97.727	ENSCANG00000043686	LSM4	93	83.721	Colobus_angolensis_palliatus
ENSLOCG00000002025	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	93	82.946	Cricetulus_griseus_chok1gshd
ENSLOCG00000002025	lsm4	62	95.402	ENSCGRG00000009398	Lsm4	93	82.812	Cricetulus_griseus_crigri
ENSLOCG00000002025	lsm4	100	83.099	ENSCSEG00000016127	lsm4	89	92.188	Cynoglossus_semilaevis
ENSLOCG00000002025	lsm4	89	86.047	ENSCVAG00000021828	lsm4	85	91.150	Cyprinodon_variegatus
ENSLOCG00000002025	lsm4	100	87.500	ENSCVAG00000010601	lsm4	89	92.188	Cyprinodon_variegatus
ENSLOCG00000002025	lsm4	94	88.571	ENSDARG00000023852	lsm4	71	97.030	Danio_rerio
ENSLOCG00000002025	lsm4	62	97.727	ENSDORG00000024225	Lsm4	93	82.946	Dipodomys_ordii
ENSLOCG00000002025	lsm4	69	82.474	FBgn0032240	CG17768	63	82.474	Drosophila_melanogaster
ENSLOCG00000002025	lsm4	52	95.890	ENSETEG00000007762	-	92	81.579	Echinops_telfairi
ENSLOCG00000002025	lsm4	53	93.333	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSLOCG00000002025	lsm4	62	97.727	ENSECAG00000010141	LSM4	53	83.721	Equus_caballus
ENSLOCG00000002025	lsm4	93	94.737	ENSELUG00000012821	lsm4	100	94.737	Esox_lucius
ENSLOCG00000002025	lsm4	62	97.727	ENSFCAG00000040580	LSM4	93	83.721	Felis_catus
ENSLOCG00000002025	lsm4	94	95.489	ENSFALG00000009478	LSM4	96	95.489	Ficedula_albicollis
ENSLOCG00000002025	lsm4	62	97.701	ENSFDAG00000010124	LSM4	93	82.812	Fukomys_damarensis
ENSLOCG00000002025	lsm4	99	82.313	ENSGMOG00000007729	lsm4	67	97.959	Gadus_morhua
ENSLOCG00000002025	lsm4	94	95.522	ENSGALG00000003385	LSM4	96	95.522	Gallus_gallus
ENSLOCG00000002025	lsm4	100	88.194	ENSGAFG00000004903	lsm4	84	88.393	Gambusia_affinis
ENSLOCG00000002025	lsm4	100	82.667	ENSGACG00000008140	lsm4	67	97.030	Gasterosteus_aculeatus
ENSLOCG00000002025	lsm4	94	93.985	ENSGAGG00000017812	LSM4	96	93.985	Gopherus_agassizii
ENSLOCG00000002025	lsm4	62	97.727	ENSGGOG00000012914	-	93	83.721	Gorilla_gorilla
ENSLOCG00000002025	lsm4	100	84.354	ENSHBUG00000008858	lsm4	69	89.062	Haplochromis_burtoni
ENSLOCG00000002025	lsm4	96	80.292	ENSHGLG00000006568	LSM4	93	81.395	Heterocephalus_glaber_female
ENSLOCG00000002025	lsm4	66	96.774	ENSHGLG00100007894	LSM4	100	96.774	Heterocephalus_glaber_male
ENSLOCG00000002025	lsm4	100	86.713	ENSHCOG00000008819	lsm4	89	90.625	Hippocampus_comes
ENSLOCG00000002025	lsm4	100	94.366	ENSIPUG00000005368	Lsm4	100	94.366	Ictalurus_punctatus
ENSLOCG00000002025	lsm4	62	97.727	ENSSTOG00000016494	LSM4	93	83.721	Ictidomys_tridecemlineatus
ENSLOCG00000002025	lsm4	62	95.455	ENSJJAG00000017420	Lsm4	93	82.171	Jaculus_jaculus
ENSLOCG00000002025	lsm4	61	97.674	ENSKMAG00000005073	lsm4	70	96.040	Kryptolebias_marmoratus
ENSLOCG00000002025	lsm4	100	79.195	ENSLBEG00000027930	lsm4	68	97.030	Labrus_bergylta
ENSLOCG00000002025	lsm4	98	87.770	ENSLACG00000015861	LSM4	92	91.473	Latimeria_chalumnae
ENSLOCG00000002025	lsm4	62	96.552	ENSLAFG00000017459	LSM4	92	83.594	Loxodonta_africana
ENSLOCG00000002025	lsm4	62	97.727	ENSMFAG00000031194	LSM4	93	83.721	Macaca_fascicularis
ENSLOCG00000002025	lsm4	62	97.727	ENSMMUG00000004405	LSM4	93	83.721	Macaca_mulatta
ENSLOCG00000002025	lsm4	62	97.727	ENSMNEG00000042899	LSM4	93	83.721	Macaca_nemestrina
ENSLOCG00000002025	lsm4	62	97.727	ENSMLEG00000027948	LSM4	93	83.721	Mandrillus_leucophaeus
ENSLOCG00000002025	lsm4	100	88.811	ENSMAMG00000006190	lsm4	89	90.625	Mastacembelus_armatus
ENSLOCG00000002025	lsm4	100	84.354	ENSMZEG00005016420	lsm4	87	89.062	Maylandia_zebra
ENSLOCG00000002025	lsm4	94	94.776	ENSMGAG00000004976	LSM4	96	94.776	Meleagris_gallopavo
ENSLOCG00000002025	lsm4	71	94.000	ENSMICG00000000222	LSM4	93	82.946	Microcebus_murinus
ENSLOCG00000002025	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	93	82.946	Microtus_ochrogaster
ENSLOCG00000002025	lsm4	52	98.630	ENSMODG00000015044	-	92	83.333	Monodelphis_domestica
ENSLOCG00000002025	lsm4	100	85.417	ENSMALG00000018159	lsm4	71	96.040	Monopterus_albus
ENSLOCG00000002025	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	93	82.946	Mus_caroli
ENSLOCG00000002025	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	97	87.000	Mus_musculus
ENSLOCG00000002025	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	93	82.946	Mus_pahari
ENSLOCG00000002025	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	93	82.946	Mus_spretus
ENSLOCG00000002025	lsm4	62	97.727	ENSMPUG00000015589	LSM4	93	83.721	Mustela_putorius_furo
ENSLOCG00000002025	lsm4	62	97.701	ENSMLUG00000004010	LSM4	92	83.594	Myotis_lucifugus
ENSLOCG00000002025	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	93	82.946	Nannospalax_galili
ENSLOCG00000002025	lsm4	70	97.959	ENSNBRG00000022150	lsm4	62	97.000	Neolamprologus_brichardi
ENSLOCG00000002025	lsm4	86	81.967	ENSMEUG00000013229	LSM4	92	78.947	Notamacropus_eugenii
ENSLOCG00000002025	lsm4	55	96.154	ENSOPRG00000005575	LSM4	92	79.646	Ochotona_princeps
ENSLOCG00000002025	lsm4	96	65.217	ENSODEG00000011712	-	98	65.217	Octodon_degus
ENSLOCG00000002025	lsm4	62	97.727	ENSODEG00000020549	-	93	82.171	Octodon_degus
ENSLOCG00000002025	lsm4	96	77.206	ENSODEG00000004519	-	72	85.000	Octodon_degus
ENSLOCG00000002025	lsm4	100	83.784	ENSONIG00000012724	lsm4	86	89.062	Oreochromis_niloticus
ENSLOCG00000002025	lsm4	62	93.407	ENSOANG00000007434	LSM4	89	92.233	Ornithorhynchus_anatinus
ENSLOCG00000002025	lsm4	100	86.207	ENSORLG00000008391	lsm4	88	91.339	Oryzias_latipes
ENSLOCG00000002025	lsm4	100	86.207	ENSORLG00020014829	lsm4	88	90.625	Oryzias_latipes_hni
ENSLOCG00000002025	lsm4	100	86.207	ENSORLG00015010205	lsm4	88	90.625	Oryzias_latipes_hsok
ENSLOCG00000002025	lsm4	100	84.828	ENSOMEG00000003606	lsm4	88	89.844	Oryzias_melastigma
ENSLOCG00000002025	lsm4	70	93.939	ENSOGAG00000027992	LSM4	87	83.465	Otolemur_garnettii
ENSLOCG00000002025	lsm4	86	84.426	ENSOARG00000012553	LSM4	91	81.739	Ovis_aries
ENSLOCG00000002025	lsm4	62	97.727	ENSPPAG00000044045	-	93	83.721	Pan_paniscus
ENSLOCG00000002025	lsm4	62	97.727	ENSPPRG00000018264	LSM4	93	83.721	Panthera_pardus
ENSLOCG00000002025	lsm4	62	97.701	ENSPTIG00000006306	LSM4	93	83.594	Panthera_tigris_altaica
ENSLOCG00000002025	lsm4	62	97.727	ENSPTRG00000031470	LSM4	93	83.721	Pan_troglodytes
ENSLOCG00000002025	lsm4	62	97.727	ENSPANG00000014399	LSM4	93	83.721	Papio_anubis
ENSLOCG00000002025	lsm4	100	96.454	ENSPKIG00000006154	lsm4	100	96.454	Paramormyrops_kingsleyae
ENSLOCG00000002025	lsm4	94	93.182	ENSPSIG00000012358	LSM4	93	93.701	Pelodiscus_sinensis
ENSLOCG00000002025	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	93	82.946	Peromyscus_maniculatus_bairdii
ENSLOCG00000002025	lsm4	100	87.500	ENSPFOG00000000570	lsm4	54	97.030	Poecilia_formosa
ENSLOCG00000002025	lsm4	100	88.194	ENSPLAG00000016267	lsm4	88	91.339	Poecilia_latipinna
ENSLOCG00000002025	lsm4	100	86.806	ENSPMEG00000016378	lsm4	88	91.339	Poecilia_mexicana
ENSLOCG00000002025	lsm4	100	86.111	ENSPREG00000011290	lsm4	54	97.030	Poecilia_reticulata
ENSLOCG00000002025	lsm4	62	97.727	ENSPPYG00000009736	LSM4	93	83.721	Pongo_abelii
ENSLOCG00000002025	lsm4	52	95.890	ENSPCAG00000008513	LSM4	92	81.579	Procavia_capensis
ENSLOCG00000002025	lsm4	71	94.000	ENSPCOG00000019837	LSM4	93	82.946	Propithecus_coquereli
ENSLOCG00000002025	lsm4	62	97.727	ENSPVAG00000015383	LSM4	93	83.721	Pteropus_vampyrus
ENSLOCG00000002025	lsm4	100	84.354	ENSPNYG00000016794	lsm4	87	89.062	Pundamilia_nyererei
ENSLOCG00000002025	lsm4	94	92.537	ENSPNAG00000016598	lsm4	94	90.551	Pygocentrus_nattereri
ENSLOCG00000002025	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	93	82.946	Rattus_norvegicus
ENSLOCG00000002025	lsm4	62	97.727	ENSRBIG00000024717	LSM4	93	83.721	Rhinopithecus_bieti
ENSLOCG00000002025	lsm4	62	97.727	ENSRROG00000045706	LSM4	93	83.721	Rhinopithecus_roxellana
ENSLOCG00000002025	lsm4	59	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSLOCG00000002025	lsm4	52	97.297	ENSSBOG00000022455	LSM4	92	81.739	Saimiri_boliviensis_boliviensis
ENSLOCG00000002025	lsm4	62	98.864	ENSSHAG00000011559	LSM4	93	85.271	Sarcophilus_harrisii
ENSLOCG00000002025	lsm4	100	95.035	ENSSFOG00015021067	lsm4	100	95.035	Scleropages_formosus
ENSLOCG00000002025	lsm4	100	76.000	ENSSMAG00000021020	lsm4	85	85.156	Scophthalmus_maximus
ENSLOCG00000002025	lsm4	100	74.405	ENSSDUG00000009588	lsm4	60	97.030	Seriola_dumerili
ENSLOCG00000002025	lsm4	100	73.964	ENSSLDG00000006827	lsm4	77	83.721	Seriola_lalandi_dorsalis
ENSLOCG00000002025	lsm4	62	98.851	ENSSPUG00000010166	LSM4	64	96.970	Sphenodon_punctatus
ENSLOCG00000002025	lsm4	100	82.895	ENSSPAG00000011615	lsm4	84	91.406	Stegastes_partitus
ENSLOCG00000002025	lsm4	62	97.727	ENSSSCG00000034314	LSM4	93	83.721	Sus_scrofa
ENSLOCG00000002025	lsm4	100	87.500	ENSTRUG00000021737	lsm4	89	90.625	Takifugu_rubripes
ENSLOCG00000002025	lsm4	100	86.806	ENSTNIG00000010191	lsm4	89	90.625	Tetraodon_nigroviridis
ENSLOCG00000002025	lsm4	97	75.182	ENSUAMG00000000665	LSM4	92	83.594	Ursus_americanus
ENSLOCG00000002025	lsm4	62	97.727	ENSUMAG00000009013	LSM4	93	83.721	Ursus_maritimus
ENSLOCG00000002025	lsm4	62	97.701	ENSVVUG00000008136	LSM4	66	83.594	Vulpes_vulpes
ENSLOCG00000002025	lsm4	96	90.441	ENSXETG00000024933	lsm4	93	92.188	Xenopus_tropicalis
ENSLOCG00000002025	lsm4	100	88.194	ENSXMAG00000026672	lsm4	54	97.030	Xiphophorus_maculatus