EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000002072 (Gene tree)
Gene ID: 102690031
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 12285 bases
Position: chrLG19:3811929-3824213
Accession: 102690031
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000002426	UPF1_Zn_bind	PF09416.10	5.1e-75	1	1
ENSLOCP00000002444	UPF1_Zn_bind	PF09416.10	6.2e-75	1	1
ENSLOCP00000002426	ResIII	PF04851.15	1.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000002450	-	3261	-	ENSLOCP00000002444	1085 (aa)	-	W5M236
ENSLOCT00000002431	-	3306	XM_006639801	ENSLOCP00000002426	1100 (aa)	XP_006639864	W5M218

Gene Model

Click here to download ENSLOCG00000002072's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000002072's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000002072	upf1	100	95.000	ENSG00000005007	UPF1	100	95.000	Homo_sapiens
ENSLOCG00000002072	upf1	100	93.937	ENSAPOG00000023773	upf1	100	93.937	Acanthochromis_polyacanthus
ENSLOCG00000002072	upf1	100	95.913	ENSAPOG00000010916	-	100	95.913	Acanthochromis_polyacanthus
ENSLOCG00000002072	upf1	100	94.405	ENSAMEG00000011474	UPF1	100	94.405	Ailuropoda_melanoleuca
ENSLOCG00000002072	upf1	93	95.029	ENSACIG00000010985	-	100	95.127	Amphilophus_citrinellus
ENSLOCG00000002072	upf1	100	94.182	ENSACIG00000019949	upf1	100	94.182	Amphilophus_citrinellus
ENSLOCG00000002072	upf1	100	96.094	ENSAOCG00000006352	-	100	96.094	Amphiprion_ocellaris
ENSLOCG00000002072	upf1	100	93.455	ENSAOCG00000018519	upf1	100	93.812	Amphiprion_ocellaris
ENSLOCG00000002072	upf1	100	93.455	ENSAPEG00000016344	upf1	100	93.812	Amphiprion_percula
ENSLOCG00000002072	upf1	100	96.094	ENSAPEG00000006292	-	100	96.094	Amphiprion_percula
ENSLOCG00000002072	upf1	100	92.253	ENSATEG00000017867	upf1	100	93.107	Anabas_testudineus
ENSLOCG00000002072	upf1	100	95.913	ENSATEG00000016606	-	100	95.913	Anabas_testudineus
ENSLOCG00000002072	upf1	95	96.777	ENSAPLG00000009175	UPF1	100	96.777	Anas_platyrhynchos
ENSLOCG00000002072	upf1	95	94.423	ENSANAG00000024107	UPF1	96	94.329	Aotus_nancymaae
ENSLOCG00000002072	upf1	100	95.640	ENSACLG00000022630	-	100	95.640	Astatotilapia_calliptera
ENSLOCG00000002072	upf1	100	93.909	ENSACLG00000007181	upf1	100	93.909	Astatotilapia_calliptera
ENSLOCG00000002072	upf1	100	97.187	ENSAMXG00000042187	upf1	100	97.187	Astyanax_mexicanus
ENSLOCG00000002072	upf1	100	94.415	ENSBTAG00000020922	UPF1	100	94.415	Bos_taurus
ENSLOCG00000002072	upf1	81	54.900	WBGene00004880	smg-2	83	54.788	Caenorhabditis_elegans
ENSLOCG00000002072	upf1	100	94.076	ENSCJAG00000019627	UPF1	100	94.076	Callithrix_jacchus
ENSLOCG00000002072	upf1	100	94.164	ENSCAFG00000014578	UPF1	100	94.164	Canis_familiaris
ENSLOCG00000002072	upf1	100	95.089	ENSCAFG00020012347	UPF1	100	95.089	Canis_lupus_dingo
ENSLOCG00000002072	upf1	100	95.345	ENSCHIG00000011018	UPF1	100	95.345	Capra_hircus
ENSLOCG00000002072	upf1	95	96.103	ENSTSYG00000008877	UPF1	98	96.103	Carlito_syrichta
ENSLOCG00000002072	upf1	96	95.301	ENSCAPG00000005758	UPF1	96	95.301	Cavia_aperea
ENSLOCG00000002072	upf1	100	95.144	ENSCPOG00000025463	UPF1	100	95.144	Cavia_porcellus
ENSLOCG00000002072	upf1	100	95.000	ENSCCAG00000032175	UPF1	100	95.000	Cebus_capucinus
ENSLOCG00000002072	upf1	95	96.198	ENSCATG00000040306	UPF1	98	96.198	Cercocebus_atys
ENSLOCG00000002072	upf1	95	96.293	ENSCLAG00000004037	UPF1	99	96.293	Chinchilla_lanigera
ENSLOCG00000002072	upf1	100	95.000	ENSCSAG00000005276	UPF1	100	95.000	Chlorocebus_sabaeus
ENSLOCG00000002072	upf1	100	95.512	ENSCPBG00000012513	UPF1	100	95.422	Chrysemys_picta_bellii
ENSLOCG00000002072	upf1	77	79.742	ENSCING00000021399	-	99	79.508	Ciona_intestinalis
ENSLOCG00000002072	upf1	99	72.956	ENSCSAVG00000006533	-	99	72.735	Ciona_savignyi
ENSLOCG00000002072	upf1	95	96.293	ENSCANG00000029819	UPF1	97	96.293	Colobus_angolensis_palliatus
ENSLOCG00000002072	upf1	100	94.798	ENSCGRG00001021067	Upf1	100	94.798	Cricetulus_griseus_chok1gshd
ENSLOCG00000002072	upf1	95	95.627	ENSCGRG00000013480	Upf1	98	95.627	Cricetulus_griseus_crigri
ENSLOCG00000002072	upf1	100	95.550	ENSCSEG00000016159	-	100	95.095	Cynoglossus_semilaevis
ENSLOCG00000002072	upf1	100	88.748	ENSCSEG00000017239	upf1	100	88.496	Cynoglossus_semilaevis
ENSLOCG00000002072	upf1	100	95.186	ENSCVAG00000010561	upf1	100	95.186	Cyprinodon_variegatus
ENSLOCG00000002072	upf1	100	96.733	ENSDARG00000016302	upf1	100	96.733	Danio_rerio
ENSLOCG00000002072	upf1	95	93.732	ENSDORG00000009984	Upf1	95	93.637	Dipodomys_ordii
ENSLOCG00000002072	upf1	85	72.582	FBgn0030354	Upf1	81	71.355	Drosophila_melanogaster
ENSLOCG00000002072	upf1	54	87.107	ENSEBUG00000010069	upf1	96	87.438	Eptatretus_burgeri
ENSLOCG00000002072	upf1	100	95.255	ENSEASG00005006549	UPF1	100	95.255	Equus_asinus_asinus
ENSLOCG00000002072	upf1	100	95.255	ENSECAG00000010639	UPF1	100	95.255	Equus_caballus
ENSLOCG00000002072	upf1	100	93.767	ENSELUG00000020917	upf1	100	93.135	Esox_lucius
ENSLOCG00000002072	upf1	100	95.126	ENSELUG00000012916	-	100	95.126	Esox_lucius
ENSLOCG00000002072	upf1	100	94.164	ENSFCAG00000009757	UPF1	100	94.164	Felis_catus
ENSLOCG00000002072	upf1	95	97.328	ENSFALG00000009312	UPF1	96	97.328	Ficedula_albicollis
ENSLOCG00000002072	upf1	95	96.198	ENSFDAG00000014816	UPF1	99	96.198	Fukomys_damarensis
ENSLOCG00000002072	upf1	100	90.844	ENSFHEG00000006428	upf1	100	90.027	Fundulus_heteroclitus
ENSLOCG00000002072	upf1	95	88.447	ENSFHEG00000016276	-	96	95.281	Fundulus_heteroclitus
ENSLOCG00000002072	upf1	100	93.351	ENSGMOG00000007541	upf1	100	93.801	Gadus_morhua
ENSLOCG00000002072	upf1	100	95.707	ENSGALG00000003220	UPF1	100	95.707	Gallus_gallus
ENSLOCG00000002072	upf1	100	95.095	ENSGAFG00000004831	upf1	100	95.095	Gambusia_affinis
ENSLOCG00000002072	upf1	64	93.575	ENSGAFG00000015443	-	88	93.445	Gambusia_affinis
ENSLOCG00000002072	upf1	100	95.942	ENSGAGG00000022217	UPF1	100	95.942	Gopherus_agassizii
ENSLOCG00000002072	upf1	95	97.310	ENSGGOG00000002608	UPF1	99	97.310	Gorilla_gorilla
ENSLOCG00000002072	upf1	86	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSLOCG00000002072	upf1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSLOCG00000002072	upf1	100	93.811	ENSHGLG00000010900	UPF1	100	93.811	Heterocephalus_glaber_female
ENSLOCG00000002072	upf1	95	94.297	ENSHGLG00100005904	UPF1	96	94.202	Heterocephalus_glaber_male
ENSLOCG00000002072	upf1	100	94.550	ENSHCOG00000008918	upf1	100	95.191	Hippocampus_comes
ENSLOCG00000002072	upf1	100	97.187	ENSIPUG00000005108	UPF1	100	97.368	Ictalurus_punctatus
ENSLOCG00000002072	upf1	100	95.000	ENSSTOG00000009196	UPF1	100	95.000	Ictidomys_tridecemlineatus
ENSLOCG00000002072	upf1	100	93.772	ENSJJAG00000023151	Upf1	100	93.772	Jaculus_jaculus
ENSLOCG00000002072	upf1	100	95.550	ENSKMAG00000004962	upf1	100	95.550	Kryptolebias_marmoratus
ENSLOCG00000002072	upf1	100	95.554	ENSLBEG00000027848	-	100	95.554	Labrus_bergylta
ENSLOCG00000002072	upf1	100	92.197	ENSLBEG00000014862	upf1	100	92.825	Labrus_bergylta
ENSLOCG00000002072	upf1	63	97.991	ENSLACG00000008482	UPF1	100	97.991	Latimeria_chalumnae
ENSLOCG00000002072	upf1	100	93.977	ENSLAFG00000014963	UPF1	100	93.977	Loxodonta_africana
ENSLOCG00000002072	upf1	100	94.746	ENSMFAG00000037748	UPF1	100	94.746	Macaca_fascicularis
ENSLOCG00000002072	upf1	100	94.494	ENSMMUG00000023286	UPF1	100	94.494	Macaca_mulatta
ENSLOCG00000002072	upf1	100	94.746	ENSMNEG00000000046	UPF1	100	94.746	Macaca_nemestrina
ENSLOCG00000002072	upf1	95	96.293	ENSMLEG00000028404	UPF1	99	96.293	Mandrillus_leucophaeus
ENSLOCG00000002072	upf1	100	95.463	ENSMAMG00000006231	-	100	95.463	Mastacembelus_armatus
ENSLOCG00000002072	upf1	100	92.659	ENSMAMG00000006229	upf1	100	93.286	Mastacembelus_armatus
ENSLOCG00000002072	upf1	100	92.806	ENSMZEG00005003489	upf1	100	93.525	Maylandia_zebra
ENSLOCG00000002072	upf1	100	95.640	ENSMZEG00005016386	-	100	95.640	Maylandia_zebra
ENSLOCG00000002072	upf1	95	96.296	ENSMGAG00000004745	UPF1	100	96.296	Meleagris_gallopavo
ENSLOCG00000002072	upf1	95	95.627	ENSMAUG00000011398	Upf1	95	95.627	Mesocricetus_auratus
ENSLOCG00000002072	upf1	100	94.911	ENSMICG00000001659	UPF1	100	94.911	Microcebus_murinus
ENSLOCG00000002072	upf1	100	93.872	ENSMOCG00000005699	Upf1	100	93.961	Microtus_ochrogaster
ENSLOCG00000002072	upf1	95	93.397	ENSMMOG00000007537	-	99	93.397	Mola_mola
ENSLOCG00000002072	upf1	100	93.545	ENSMMOG00000007881	upf1	100	93.733	Mola_mola
ENSLOCG00000002072	upf1	100	94.004	ENSMODG00000003689	UPF1	100	94.092	Monodelphis_domestica
ENSLOCG00000002072	upf1	100	93.455	ENSMALG00000000144	upf1	100	93.636	Monopterus_albus
ENSLOCG00000002072	upf1	100	94.299	ENSMALG00000018100	-	100	94.299	Monopterus_albus
ENSLOCG00000002072	upf1	100	94.709	MGP_CAROLIEiJ_G0031142	Upf1	100	94.709	Mus_caroli
ENSLOCG00000002072	upf1	100	94.709	ENSMUSG00000058301	Upf1	100	94.709	Mus_musculus
ENSLOCG00000002072	upf1	100	94.709	MGP_PahariEiJ_G0021607	Upf1	100	94.709	Mus_pahari
ENSLOCG00000002072	upf1	100	94.709	MGP_SPRETEiJ_G0032260	Upf1	100	94.709	Mus_spretus
ENSLOCG00000002072	upf1	100	95.089	ENSMPUG00000015516	UPF1	100	95.089	Mustela_putorius_furo
ENSLOCG00000002072	upf1	99	94.892	ENSMLUG00000012122	UPF1	99	94.892	Myotis_lucifugus
ENSLOCG00000002072	upf1	100	93.711	ENSNGAG00000024107	Upf1	100	93.711	Nannospalax_galili
ENSLOCG00000002072	upf1	100	92.119	ENSNBRG00000022069	-	100	95.044	Neolamprologus_brichardi
ENSLOCG00000002072	upf1	100	92.091	ENSNBRG00000000670	upf1	100	92.091	Neolamprologus_brichardi
ENSLOCG00000002072	upf1	95	90.494	ENSNLEG00000006062	UPF1	99	90.399	Nomascus_leucogenys
ENSLOCG00000002072	upf1	84	91.977	ENSMEUG00000014146	-	83	91.781	Notamacropus_eugenii
ENSLOCG00000002072	upf1	95	89.914	ENSOPRG00000014018	UPF1	99	89.817	Ochotona_princeps
ENSLOCG00000002072	upf1	100	95.230	ENSODEG00000012426	UPF1	100	95.230	Octodon_degus
ENSLOCG00000002072	upf1	100	95.640	ENSONIG00000012729	-	100	95.640	Oreochromis_niloticus
ENSLOCG00000002072	upf1	100	93.076	ENSONIG00000010452	upf1	100	93.795	Oreochromis_niloticus
ENSLOCG00000002072	upf1	100	94.154	ENSOANG00000004568	UPF1	100	93.357	Ornithorhynchus_anatinus
ENSLOCG00000002072	upf1	100	95.550	ENSORLG00000008453	upf1	100	95.550	Oryzias_latipes
ENSLOCG00000002072	upf1	100	95.463	ENSORLG00020014758	upf1	100	95.463	Oryzias_latipes_hni
ENSLOCG00000002072	upf1	100	95.463	ENSORLG00015010165	upf1	100	95.463	Oryzias_latipes_hsok
ENSLOCG00000002072	upf1	100	95.640	ENSOMEG00000003665	upf1	100	95.640	Oryzias_melastigma
ENSLOCG00000002072	upf1	100	95.089	ENSOGAG00000012866	UPF1	100	95.089	Otolemur_garnettii
ENSLOCG00000002072	upf1	96	93.376	ENSOARG00000010739	UPF1	100	93.100	Ovis_aries
ENSLOCG00000002072	upf1	95	96.293	ENSPPAG00000043884	UPF1	96	96.293	Pan_paniscus
ENSLOCG00000002072	upf1	100	94.164	ENSPPRG00000023470	UPF1	100	94.164	Panthera_pardus
ENSLOCG00000002072	upf1	95	95.206	ENSPTIG00000010159	UPF1	99	95.206	Panthera_tigris_altaica
ENSLOCG00000002072	upf1	100	94.746	ENSPTRG00000010721	UPF1	100	94.746	Pan_troglodytes
ENSLOCG00000002072	upf1	100	94.746	ENSPANG00000008847	UPF1	100	94.746	Papio_anubis
ENSLOCG00000002072	upf1	91	97.236	ENSPKIG00000006069	upf1	97	97.236	Paramormyrops_kingsleyae
ENSLOCG00000002072	upf1	70	96.606	ENSPSIG00000009491	UPF1	100	96.606	Pelodiscus_sinensis
ENSLOCG00000002072	upf1	100	91.486	ENSPMGG00000017327	upf1	100	91.848	Periophthalmus_magnuspinnatus
ENSLOCG00000002072	upf1	100	93.872	ENSPEMG00000001085	Upf1	100	93.872	Peromyscus_maniculatus_bairdii
ENSLOCG00000002072	upf1	100	88.368	ENSPMAG00000001206	upf1	100	88.368	Petromyzon_marinus
ENSLOCG00000002072	upf1	100	95.442	ENSPCIG00000006156	UPF1	100	95.442	Phascolarctos_cinereus
ENSLOCG00000002072	upf1	100	92.342	ENSPLAG00000018155	-	100	91.351	Poecilia_latipinna
ENSLOCG00000002072	upf1	100	95.186	ENSPLAG00000016232	-	100	95.186	Poecilia_latipinna
ENSLOCG00000002072	upf1	100	92.740	ENSPMEG00000011443	-	100	92.182	Poecilia_mexicana
ENSLOCG00000002072	upf1	100	95.100	ENSPMEG00000016319	-	100	95.100	Poecilia_mexicana
ENSLOCG00000002072	upf1	100	95.005	ENSPREG00000011247	-	100	95.005	Poecilia_reticulata
ENSLOCG00000002072	upf1	100	92.176	ENSPREG00000009940	upf1	100	91.547	Poecilia_reticulata
ENSLOCG00000002072	upf1	100	89.302	ENSPPYG00000009752	UPF1	100	89.302	Pongo_abelii
ENSLOCG00000002072	upf1	76	99.663	ENSPCAG00000012962	UPF1	76	99.663	Procavia_capensis
ENSLOCG00000002072	upf1	100	94.578	ENSPCOG00000023813	UPF1	100	94.578	Propithecus_coquereli
ENSLOCG00000002072	upf1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSLOCG00000002072	upf1	100	95.640	ENSPNYG00000016731	-	100	95.640	Pundamilia_nyererei
ENSLOCG00000002072	upf1	100	92.806	ENSPNYG00000003694	upf1	100	93.525	Pundamilia_nyererei
ENSLOCG00000002072	upf1	100	96.915	ENSPNAG00000025614	upf1	100	96.915	Pygocentrus_nattereri
ENSLOCG00000002072	upf1	100	94.709	ENSRNOG00000020134	Upf1	100	94.709	Rattus_norvegicus
ENSLOCG00000002072	upf1	95	93.916	ENSRBIG00000013894	UPF1	98	97.155	Rhinopithecus_bieti
ENSLOCG00000002072	upf1	95	96.293	ENSRROG00000040935	UPF1	98	97.155	Rhinopithecus_roxellana
ENSLOCG00000002072	upf1	74	56.916	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSLOCG00000002072	upf1	95	96.289	ENSSBOG00000023632	UPF1	96	96.289	Saimiri_boliviensis_boliviensis
ENSLOCG00000002072	upf1	95	96.300	ENSSHAG00000010499	UPF1	100	96.300	Sarcophilus_harrisii
ENSLOCG00000002072	upf1	100	98.456	ENSSFOG00015021095	upf1	100	98.456	Scleropages_formosus
ENSLOCG00000002072	upf1	100	96.007	ENSSMAG00000021018	-	100	96.007	Scophthalmus_maximus
ENSLOCG00000002072	upf1	100	91.839	ENSSMAG00000005055	upf1	100	92.287	Scophthalmus_maximus
ENSLOCG00000002072	upf1	100	92.659	ENSSDUG00000013320	upf1	100	93.286	Seriola_dumerili
ENSLOCG00000002072	upf1	100	96.007	ENSSDUG00000009629	-	100	96.007	Seriola_dumerili
ENSLOCG00000002072	upf1	100	93.496	ENSSLDG00000020868	upf1	100	93.767	Seriola_lalandi_dorsalis
ENSLOCG00000002072	upf1	100	96.007	ENSSLDG00000006878	-	100	96.007	Seriola_lalandi_dorsalis
ENSLOCG00000002072	upf1	100	96.130	ENSSPUG00000010538	UPF1	100	96.130	Sphenodon_punctatus
ENSLOCG00000002072	upf1	100	92.112	ENSSPAG00000000003	upf1	100	91.909	Stegastes_partitus
ENSLOCG00000002072	upf1	100	95.005	ENSSPAG00000011521	-	100	95.731	Stegastes_partitus
ENSLOCG00000002072	upf1	100	95.345	ENSSSCG00000039301	UPF1	99	97.315	Sus_scrofa
ENSLOCG00000002072	upf1	82	88.830	ENSTGUG00000001057	UPF1	100	93.195	Taeniopygia_guttata
ENSLOCG00000002072	upf1	100	93.545	ENSTRUG00000000150	upf1	100	93.279	Takifugu_rubripes
ENSLOCG00000002072	upf1	100	94.732	ENSTRUG00000005131	-	100	94.732	Takifugu_rubripes
ENSLOCG00000002072	upf1	100	91.674	ENSTTRG00000011544	UPF1	100	91.585	Tursiops_truncatus
ENSLOCG00000002072	upf1	100	95.089	ENSUAMG00000007093	UPF1	100	95.089	Ursus_americanus
ENSLOCG00000002072	upf1	99	93.449	ENSUMAG00000006652	UPF1	99	97.617	Ursus_maritimus
ENSLOCG00000002072	upf1	100	95.089	ENSVVUG00000007797	UPF1	100	95.089	Vulpes_vulpes
ENSLOCG00000002072	upf1	100	81.850	ENSXETG00000013602	upf1	100	81.850	Xenopus_tropicalis
ENSLOCG00000002072	upf1	94	95.446	ENSXCOG00000005764	-	100	95.446	Xiphophorus_couchianus
ENSLOCG00000002072	upf1	97	92.293	ENSXCOG00000015275	-	96	92.293	Xiphophorus_couchianus
ENSLOCG00000002072	upf1	100	92.371	ENSXMAG00000001703	-	100	92.371	Xiphophorus_maculatus
ENSLOCG00000002072	upf1	100	94.918	ENSXMAG00000002540	-	100	94.918	Xiphophorus_maculatus