EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000002130 (Gene tree)
Gene ID: 102693592
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 16621 bases
Position: chrLG28:1842333-1858953
Accession: 102693592
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000002504	KH_1	PF00013.29	8e-07	1	1
ENSLOCP00000002488	KH_1	PF00013.29	9.1e-07	1	1
ENSLOCP00000002504	zf-CCHC	PF00098.23	0.0002	1	1
ENSLOCP00000002488	zf-CCHC	PF00098.23	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000002510	-	1917	XM_006642832	ENSLOCP00000002504	638 (aa)	-	W5M296
ENSLOCT00000002494	-	3585	-	ENSLOCP00000002488	697 (aa)	-	W5M280

Gene Model

Click here to download ENSLOCG00000002130's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000002130's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000002130	sf1	76	78.842	ENSAPOG00000012341	sf1	67	79.789	Acanthochromis_polyacanthus
ENSLOCG00000002130	sf1	59	79.803	ENSAMEG00000017828	SF1	57	84.759	Ailuropoda_melanoleuca
ENSLOCG00000002130	sf1	72	77.991	ENSACIG00000016514	sf1	66	76.129	Amphilophus_citrinellus
ENSLOCG00000002130	sf1	70	79.839	ENSAOCG00000010934	sf1	67	80.550	Amphiprion_ocellaris
ENSLOCG00000002130	sf1	70	79.839	ENSAPEG00000009498	sf1	67	80.550	Amphiprion_percula
ENSLOCG00000002130	sf1	66	81.489	ENSATEG00000001894	sf1	67	80.000	Anabas_testudineus
ENSLOCG00000002130	sf1	57	85.215	ENSANAG00000026664	-	88	85.294	Aotus_nancymaae
ENSLOCG00000002130	sf1	82	60.099	ENSANAG00000022607	-	89	75.603	Aotus_nancymaae
ENSLOCG00000002130	sf1	72	80.000	ENSACLG00000007633	sf1	69	79.526	Astatotilapia_calliptera
ENSLOCG00000002130	sf1	75	84.647	ENSAMXG00000003630	sf1	60	83.084	Astyanax_mexicanus
ENSLOCG00000002130	sf1	59	80.049	ENSBTAG00000001035	SF1	61	85.294	Bos_taurus
ENSLOCG00000002130	sf1	59	80.049	ENSCJAG00000002780	SF1	75	73.870	Callithrix_jacchus
ENSLOCG00000002130	sf1	59	79.803	ENSCAFG00000014239	SF1	58	85.294	Canis_familiaris
ENSLOCG00000002130	sf1	59	80.049	ENSCAFG00020014381	SF1	58	85.294	Canis_lupus_dingo
ENSLOCG00000002130	sf1	59	80.049	ENSCHIG00000025867	SF1	68	84.881	Capra_hircus
ENSLOCG00000002130	sf1	58	79.753	ENSCAPG00000010762	SF1	66	84.309	Cavia_aperea
ENSLOCG00000002130	sf1	59	79.803	ENSCPOG00000012290	SF1	69	84.718	Cavia_porcellus
ENSLOCG00000002130	sf1	57	84.946	ENSCCAG00000037881	SF1	88	85.294	Cebus_capucinus
ENSLOCG00000002130	sf1	63	72.482	ENSCCAG00000023781	-	83	74.536	Cebus_capucinus
ENSLOCG00000002130	sf1	59	82.552	ENSCATG00000011564	SF1	88	85.294	Cercocebus_atys
ENSLOCG00000002130	sf1	59	80.049	ENSCSAG00000007258	SF1	68	84.881	Chlorocebus_sabaeus
ENSLOCG00000002130	sf1	56	74.160	ENSCHOG00000006008	SF1	71	75.263	Choloepus_hoffmanni
ENSLOCG00000002130	sf1	65	57.210	ENSCING00000005564	-	93	53.909	Ciona_intestinalis
ENSLOCG00000002130	sf1	64	60.584	ENSCSAVG00000009055	-	74	61.165	Ciona_savignyi
ENSLOCG00000002130	sf1	57	84.946	ENSCANG00000042201	SF1	88	85.294	Colobus_angolensis_palliatus
ENSLOCG00000002130	sf1	59	80.296	ENSCGRG00001003677	Sf1	65	85.146	Cricetulus_griseus_chok1gshd
ENSLOCG00000002130	sf1	58	80.247	ENSCGRG00000001708	Sf1	68	85.523	Cricetulus_griseus_crigri
ENSLOCG00000002130	sf1	97	71.971	ENSCSEG00000014375	sf1	65	76.842	Cynoglossus_semilaevis
ENSLOCG00000002130	sf1	72	80.000	ENSCVAG00000001670	sf1	59	88.859	Cyprinodon_variegatus
ENSLOCG00000002130	sf1	75	84.025	ENSDARG00000008188	sf1	64	93.425	Danio_rerio
ENSLOCG00000002130	sf1	59	80.049	ENSDNOG00000001282	SF1	68	84.881	Dasypus_novemcinctus
ENSLOCG00000002130	sf1	59	80.049	ENSDORG00000016334	Sf1	58	85.294	Dipodomys_ordii
ENSLOCG00000002130	sf1	93	45.042	ENSEBUG00000012728	sf1	61	54.737	Eptatretus_burgeri
ENSLOCG00000002130	sf1	59	79.557	ENSEASG00005018272	SF1	68	84.350	Equus_asinus_asinus
ENSLOCG00000002130	sf1	59	79.803	ENSECAG00000024544	SF1	68	84.615	Equus_caballus
ENSLOCG00000002130	sf1	52	79.558	ENSEEUG00000001058	SF1	83	84.985	Erinaceus_europaeus
ENSLOCG00000002130	sf1	72	82.516	ENSELUG00000013225	sf1	60	82.627	Esox_lucius
ENSLOCG00000002130	sf1	59	80.049	ENSFCAG00000012231	SF1	58	85.294	Felis_catus
ENSLOCG00000002130	sf1	58	79.753	ENSFDAG00000009833	SF1	66	84.840	Fukomys_damarensis
ENSLOCG00000002130	sf1	72	81.023	ENSFHEG00000022656	sf1	67	79.449	Fundulus_heteroclitus
ENSLOCG00000002130	sf1	75	77.526	ENSGMOG00000007469	sf1	61	91.592	Gadus_morhua
ENSLOCG00000002130	sf1	92	78.930	ENSGAFG00000019284	sf1	70	86.170	Gambusia_affinis
ENSLOCG00000002130	sf1	58	87.200	ENSGACG00000000826	sf1	64	87.903	Gasterosteus_aculeatus
ENSLOCG00000002130	sf1	66	83.059	ENSGAGG00000021691	SF1	53	86.968	Gopherus_agassizii
ENSLOCG00000002130	sf1	72	79.957	ENSHBUG00000011598	sf1	67	79.915	Haplochromis_burtoni
ENSLOCG00000002130	sf1	59	79.803	ENSHGLG00000009541	SF1	65	84.881	Heterocephalus_glaber_female
ENSLOCG00000002130	sf1	65	70.787	ENSHGLG00100008255	-	72	76.127	Heterocephalus_glaber_male
ENSLOCG00000002130	sf1	58	79.753	ENSHGLG00100013879	-	66	84.840	Heterocephalus_glaber_male
ENSLOCG00000002130	sf1	69	78.323	ENSHCOG00000011388	sf1	68	78.390	Hippocampus_comes
ENSLOCG00000002130	sf1	58	80.000	ENSSTOG00000009790	-	59	85.255	Ictidomys_tridecemlineatus
ENSLOCG00000002130	sf1	66	72.350	ENSSTOG00000024353	-	67	74.271	Ictidomys_tridecemlineatus
ENSLOCG00000002130	sf1	59	80.296	ENSJJAG00000011788	Sf1	58	85.561	Jaculus_jaculus
ENSLOCG00000002130	sf1	73	79.665	ENSKMAG00000005854	sf1	70	79.915	Kryptolebias_marmoratus
ENSLOCG00000002130	sf1	97	61.730	ENSLBEG00000019836	sf1	72	79.202	Labrus_bergylta
ENSLOCG00000002130	sf1	63	81.436	ENSLACG00000018493	SF1	68	83.243	Latimeria_chalumnae
ENSLOCG00000002130	sf1	59	81.034	ENSLAFG00000007201	SF1	63	85.561	Loxodonta_africana
ENSLOCG00000002130	sf1	59	82.552	ENSMFAG00000033122	SF1	88	85.294	Macaca_fascicularis
ENSLOCG00000002130	sf1	57	84.946	ENSMMUG00000022606	SF1	91	84.881	Macaca_mulatta
ENSLOCG00000002130	sf1	59	82.552	ENSMNEG00000037901	SF1	88	85.294	Macaca_nemestrina
ENSLOCG00000002130	sf1	59	82.292	ENSMLEG00000040706	SF1	89	85.027	Mandrillus_leucophaeus
ENSLOCG00000002130	sf1	66	81.702	ENSMAMG00000001780	sf1	67	79.704	Mastacembelus_armatus
ENSLOCG00000002130	sf1	72	79.957	ENSMZEG00005009196	sf1	67	79.915	Maylandia_zebra
ENSLOCG00000002130	sf1	59	80.049	ENSMAUG00000014064	Sf1	65	85.146	Mesocricetus_auratus
ENSLOCG00000002130	sf1	57	84.718	ENSMICG00000001202	SF1	88	85.067	Microcebus_murinus
ENSLOCG00000002130	sf1	59	80.049	ENSMOCG00000022038	Sf1	65	85.146	Microtus_ochrogaster
ENSLOCG00000002130	sf1	72	79.229	ENSMMOG00000020474	sf1	67	75.966	Mola_mola
ENSLOCG00000002130	sf1	63	81.446	ENSMODG00000029407	SF1	81	84.615	Monodelphis_domestica
ENSLOCG00000002130	sf1	72	78.112	ENSMALG00000020521	sf1	72	74.732	Monopterus_albus
ENSLOCG00000002130	sf1	59	80.296	MGP_CAROLIEiJ_G0022607	Sf1	99	96.241	Mus_caroli
ENSLOCG00000002130	sf1	59	80.296	ENSMUSG00000024949	Sf1	99	96.241	Mus_musculus
ENSLOCG00000002130	sf1	59	80.296	MGP_PahariEiJ_G0014101	Sf1	99	96.241	Mus_pahari
ENSLOCG00000002130	sf1	59	80.296	MGP_SPRETEiJ_G0023518	Sf1	99	96.241	Mus_spretus
ENSLOCG00000002130	sf1	59	80.049	ENSMPUG00000012684	SF1	58	85.294	Mustela_putorius_furo
ENSLOCG00000002130	sf1	66	77.574	ENSMLUG00000029800	-	64	81.432	Myotis_lucifugus
ENSLOCG00000002130	sf1	59	80.049	ENSMLUG00000015217	-	58	85.294	Myotis_lucifugus
ENSLOCG00000002130	sf1	59	80.049	ENSNGAG00000005550	Sf1	65	85.146	Nannospalax_galili
ENSLOCG00000002130	sf1	72	80.000	ENSNBRG00000017606	sf1	68	79.526	Neolamprologus_brichardi
ENSLOCG00000002130	sf1	57	84.946	ENSNLEG00000005236	-	88	85.294	Nomascus_leucogenys
ENSLOCG00000002130	sf1	58	80.451	ENSMEUG00000013424	SF1	69	85.405	Notamacropus_eugenii
ENSLOCG00000002130	sf1	52	79.558	ENSOPRG00000005008	SF1	66	85.455	Ochotona_princeps
ENSLOCG00000002130	sf1	77	69.361	ENSODEG00000006102	-	59	82.888	Octodon_degus
ENSLOCG00000002130	sf1	72	79.744	ENSONIG00000015728	sf1	67	79.704	Oreochromis_niloticus
ENSLOCG00000002130	sf1	54	73.867	ENSOANG00000002909	SF1	76	79.743	Ornithorhynchus_anatinus
ENSLOCG00000002130	sf1	59	79.803	ENSOCUG00000026486	SF1	59	84.759	Oryctolagus_cuniculus
ENSLOCG00000002130	sf1	75	79.022	ENSORLG00000011853	sf1	66	77.755	Oryzias_latipes
ENSLOCG00000002130	sf1	69	78.937	ENSORLG00020011834	sf1	66	77.755	Oryzias_latipes_hni
ENSLOCG00000002130	sf1	67	79.202	ENSORLG00015012855	sf1	66	78.992	Oryzias_latipes_hsok
ENSLOCG00000002130	sf1	67	80.085	ENSOMEG00000005210	sf1	67	79.832	Oryzias_melastigma
ENSLOCG00000002130	sf1	59	79.803	ENSOGAG00000016196	SF1	58	85.294	Otolemur_garnettii
ENSLOCG00000002130	sf1	59	79.803	ENSOARG00000009166	SF1	65	85.294	Ovis_aries
ENSLOCG00000002130	sf1	57	84.946	ENSPPAG00000002799	-	90	85.294	Pan_paniscus
ENSLOCG00000002130	sf1	66	74.222	ENSPPRG00000013566	SF1	57	86.275	Panthera_pardus
ENSLOCG00000002130	sf1	60	78.657	ENSPTIG00000016141	SF1	67	84.881	Panthera_tigris_altaica
ENSLOCG00000002130	sf1	57	84.946	ENSPTRG00000003846	SF1	88	85.294	Pan_troglodytes
ENSLOCG00000002130	sf1	59	82.552	ENSPANG00000020754	SF1	88	85.294	Papio_anubis
ENSLOCG00000002130	sf1	51	83.976	ENSPKIG00000012116	sf1	80	83.596	Paramormyrops_kingsleyae
ENSLOCG00000002130	sf1	59	80.049	ENSPEMG00000010463	Sf1	65	85.146	Peromyscus_maniculatus_bairdii
ENSLOCG00000002130	sf1	59	80.344	ENSPCIG00000018173	SF1	60	85.829	Phascolarctos_cinereus
ENSLOCG00000002130	sf1	72	81.277	ENSPFOG00000013683	sf1	76	89.946	Poecilia_formosa
ENSLOCG00000002130	sf1	82	81.955	ENSPLAG00000018076	sf1	56	89.757	Poecilia_latipinna
ENSLOCG00000002130	sf1	72	81.277	ENSPMEG00000005726	sf1	68	80.679	Poecilia_mexicana
ENSLOCG00000002130	sf1	66	81.064	ENSPREG00000004155	sf1	68	80.467	Poecilia_reticulata
ENSLOCG00000002130	sf1	59	80.049	ENSPPYG00000003098	-	70	85.294	Pongo_abelii
ENSLOCG00000002130	sf1	59	79.951	ENSPCAG00000013631	SF1	55	84.615	Procavia_capensis
ENSLOCG00000002130	sf1	57	84.718	ENSPCOG00000027546	SF1	88	85.067	Propithecus_coquereli
ENSLOCG00000002130	sf1	59	80.196	ENSPVAG00000016938	SF1	75	74.651	Pteropus_vampyrus
ENSLOCG00000002130	sf1	72	80.384	ENSPNYG00000004673	sf1	67	79.915	Pundamilia_nyererei
ENSLOCG00000002130	sf1	73	84.120	ENSPNAG00000013072	sf1	67	82.937	Pygocentrus_nattereri
ENSLOCG00000002130	sf1	59	80.049	ENSRNOG00000021085	Sf1	61	84.466	Rattus_norvegicus
ENSLOCG00000002130	sf1	57	84.946	ENSRBIG00000042818	SF1	88	85.294	Rhinopithecus_bieti
ENSLOCG00000002130	sf1	57	84.677	ENSRROG00000045655	SF1	89	85.027	Rhinopithecus_roxellana
ENSLOCG00000002130	sf1	71	64.547	ENSSBOG00000022267	-	88	71.088	Saimiri_boliviensis_boliviensis
ENSLOCG00000002130	sf1	57	87.193	ENSSHAG00000006841	SF1	69	87.297	Sarcophilus_harrisii
ENSLOCG00000002130	sf1	76	84.536	ENSSFOG00015021978	sf1	66	84.086	Scleropages_formosus
ENSLOCG00000002130	sf1	91	79.258	ENSSMAG00000007549	sf1	71	78.981	Scophthalmus_maximus
ENSLOCG00000002130	sf1	72	80.508	ENSSDUG00000003903	sf1	70	78.858	Seriola_dumerili
ENSLOCG00000002130	sf1	72	80.297	ENSSLDG00000013075	sf1	68	78.647	Seriola_lalandi_dorsalis
ENSLOCG00000002130	sf1	58	75.062	ENSSARG00000008180	SF1	71	79.893	Sorex_araneus
ENSLOCG00000002130	sf1	62	81.412	ENSSPUG00000012907	SF1	59	88.952	Sphenodon_punctatus
ENSLOCG00000002130	sf1	70	80.162	ENSSPAG00000019060	sf1	67	80.338	Stegastes_partitus
ENSLOCG00000002130	sf1	59	80.049	ENSSSCG00000013021	SF1	68	84.881	Sus_scrofa
ENSLOCG00000002130	sf1	76	65.217	ENSTNIG00000004820	sf1	72	75.000	Tetraodon_nigroviridis
ENSLOCG00000002130	sf1	58	75.556	ENSTTRG00000008857	SF1	68	80.053	Tursiops_truncatus
ENSLOCG00000002130	sf1	59	81.955	ENSUMAG00000007268	SF1	71	84.881	Ursus_maritimus
ENSLOCG00000002130	sf1	59	80.049	ENSVVUG00000028585	SF1	68	84.881	Vulpes_vulpes
ENSLOCG00000002130	sf1	82	70.609	ENSXETG00000008434	sf1	64	87.027	Xenopus_tropicalis
ENSLOCG00000002130	sf1	56	88.950	ENSXCOG00000003704	sf1	69	88.950	Xiphophorus_couchianus
ENSLOCG00000002130	sf1	72	80.213	ENSXMAG00000007822	sf1	70	80.086	Xiphophorus_maculatus