EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000002644 (Gene tree)
Gene ID: 102695546
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 18372 bases
Position: chrLG13:4032806-4051177
Accession: 102695546
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000003121	MMR_HSR1	PF01926.23	1.2e-08	1	1
ENSLOCP00000003104	MMR_HSR1	PF01926.23	1.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000003128	-	4609	XM_006637035	ENSLOCP00000003121	469 (aa)	XP_015215432	W5M413
ENSLOCT00000003111	-	5314	-	ENSLOCP00000003104	704 (aa)	-	W5M3Z6

Gene Model

Click here to download ENSLOCG00000002644's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000002644's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000002644	srl	74	32.659	ENSLOCG00000009774	ehd4	62	32.659
ENSLOCG00000002644	srl	79	33.244	ENSLOCG00000016786	ehd3	71	33.248
ENSLOCG00000002644	srl	57	40.226	ENSLOCG00000000924	ehd1b	51	38.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000002644	srl	97	84.581	ENSG00000185739	SRL	99	86.047	Homo_sapiens
ENSLOCG00000002644	srl	99	87.580	ENSAPOG00000018093	srl	99	90.249	Acanthochromis_polyacanthus
ENSLOCG00000002644	srl	94	76.749	ENSAPOG00000012432	SRL	99	76.749	Acanthochromis_polyacanthus
ENSLOCG00000002644	srl	97	84.279	ENSAMEG00000010862	SRL	52	84.498	Ailuropoda_melanoleuca
ENSLOCG00000002644	srl	96	75.893	ENSACIG00000015419	SRL	99	75.893	Amphilophus_citrinellus
ENSLOCG00000002644	srl	96	89.159	ENSACIG00000015799	srl	100	89.159	Amphilophus_citrinellus
ENSLOCG00000002644	srl	95	77.303	ENSAOCG00000017049	SRL	97	77.303	Amphiprion_ocellaris
ENSLOCG00000002644	srl	93	90.783	ENSAOCG00000007574	srl	100	90.783	Amphiprion_ocellaris
ENSLOCG00000002644	srl	95	73.198	ENSAPEG00000006533	SRL	97	74.157	Amphiprion_percula
ENSLOCG00000002644	srl	99	87.794	ENSAPEG00000006911	srl	99	87.794	Amphiprion_percula
ENSLOCG00000002644	srl	95	76.149	ENSATEG00000009643	SRL	53	76.805	Anabas_testudineus
ENSLOCG00000002644	srl	98	88.453	ENSATEG00000024315	srl	99	87.527	Anabas_testudineus
ENSLOCG00000002644	srl	94	84.768	ENSACAG00000016380	SRL	89	80.825	Anolis_carolinensis
ENSLOCG00000002644	srl	99	87.393	ENSACLG00000027685	srl	99	88.571	Astatotilapia_calliptera
ENSLOCG00000002644	srl	96	74.620	ENSACLG00000024674	SRL	55	77.451	Astatotilapia_calliptera
ENSLOCG00000002644	srl	99	89.056	ENSAMXG00000018789	srl	91	89.056	Astyanax_mexicanus
ENSLOCG00000002644	srl	89	77.804	ENSAMXG00000038693	SRL	100	73.510	Astyanax_mexicanus
ENSLOCG00000002644	srl	97	84.361	ENSBTAG00000001078	SRL	57	84.361	Bos_taurus
ENSLOCG00000002644	srl	94	86.425	ENSCJAG00000019750	SRL	99	83.617	Callithrix_jacchus
ENSLOCG00000002644	srl	97	84.361	ENSCAFG00000019233	SRL	84	84.361	Canis_familiaris
ENSLOCG00000002644	srl	96	84.327	ENSCAFG00020025024	SRL	56	84.327	Canis_lupus_dingo
ENSLOCG00000002644	srl	97	84.061	ENSCHIG00000017927	SRL	56	84.513	Capra_hircus
ENSLOCG00000002644	srl	99	83.191	ENSTSYG00000007919	SRL	99	86.279	Carlito_syrichta
ENSLOCG00000002644	srl	96	84.292	ENSCPOG00000012643	SRL	99	82.516	Cavia_porcellus
ENSLOCG00000002644	srl	94	80.543	ENSCCAG00000032646	SRL	100	86.280	Cebus_capucinus
ENSLOCG00000002644	srl	97	84.581	ENSCATG00000032227	-	99	83.191	Cercocebus_atys
ENSLOCG00000002644	srl	96	84.071	ENSCLAG00000016242	SRL	99	82.303	Chinchilla_lanigera
ENSLOCG00000002644	srl	82	86.494	ENSCHOG00000001618	SRL	52	86.494	Choloepus_hoffmanni
ENSLOCG00000002644	srl	96	87.047	ENSCPBG00000026371	SRL	99	81.799	Chrysemys_picta_bellii
ENSLOCG00000002644	srl	88	60.096	ENSCING00000005231	-	93	60.096	Ciona_intestinalis
ENSLOCG00000002644	srl	97	84.581	ENSCANG00000035872	SRL	99	86.047	Colobus_angolensis_palliatus
ENSLOCG00000002644	srl	96	84.768	ENSCGRG00001016630	Srl	99	82.766	Cricetulus_griseus_chok1gshd
ENSLOCG00000002644	srl	96	84.768	ENSCGRG00000005458	Srl	99	82.766	Cricetulus_griseus_crigri
ENSLOCG00000002644	srl	99	87.366	ENSCSEG00000016151	srl	99	87.366	Cynoglossus_semilaevis
ENSLOCG00000002644	srl	96	74.614	ENSCSEG00000011866	SRL	91	74.670	Cynoglossus_semilaevis
ENSLOCG00000002644	srl	94	76.549	ENSCVAG00000022465	SRL	60	76.549	Cyprinodon_variegatus
ENSLOCG00000002644	srl	96	89.579	ENSCVAG00000003513	srl	99	87.580	Cyprinodon_variegatus
ENSLOCG00000002644	srl	99	88.675	ENSDARG00000104587	srl	99	88.675	Danio_rerio
ENSLOCG00000002644	srl	81	78.906	ENSDARG00000112959	CABZ01072309.1	100	78.906	Danio_rerio
ENSLOCG00000002644	srl	94	85.747	ENSDNOG00000011643	SRL	54	84.768	Dasypus_novemcinctus
ENSLOCG00000002644	srl	96	84.956	ENSDORG00000014807	Srl	99	83.156	Dipodomys_ordii
ENSLOCG00000002644	srl	78	66.667	ENSEBUG00000015937	srl	95	66.667	Eptatretus_burgeri
ENSLOCG00000002644	srl	94	85.714	ENSEASG00005000942	SRL	55	84.581	Equus_asinus_asinus
ENSLOCG00000002644	srl	99	83.582	ENSECAG00000024219	SRL	99	83.582	Equus_caballus
ENSLOCG00000002644	srl	99	83.058	ENSELUG00000015616	srl	99	83.058	Esox_lucius
ENSLOCG00000002644	srl	99	82.766	ENSFCAG00000022075	SRL	99	83.830	Felis_catus
ENSLOCG00000002644	srl	96	84.922	ENSFALG00000004328	SRL	64	84.922	Ficedula_albicollis
ENSLOCG00000002644	srl	96	84.956	ENSFDAG00000006199	SRL	99	83.369	Fukomys_damarensis
ENSLOCG00000002644	srl	94	88.939	ENSFHEG00000011239	srl	99	86.081	Fundulus_heteroclitus
ENSLOCG00000002644	srl	96	76.339	ENSFHEG00000011854	SRL	99	76.837	Fundulus_heteroclitus
ENSLOCG00000002644	srl	94	87.225	ENSGMOG00000014954	srl	100	87.225	Gadus_morhua
ENSLOCG00000002644	srl	99	83.691	ENSGALG00000038884	SRL	99	83.691	Gallus_gallus
ENSLOCG00000002644	srl	97	88.079	ENSGAFG00000000010	srl	98	88.079	Gambusia_affinis
ENSLOCG00000002644	srl	94	78.054	ENSGAFG00000016984	SRL	98	78.054	Gambusia_affinis
ENSLOCG00000002644	srl	94	86.784	ENSGACG00000011332	srl	99	86.784	Gasterosteus_aculeatus
ENSLOCG00000002644	srl	97	84.581	ENSGGOG00000011312	-	99	82.979	Gorilla_gorilla
ENSLOCG00000002644	srl	96	74.620	ENSHBUG00000015710	SRL	57	75.054	Haplochromis_burtoni
ENSLOCG00000002644	srl	99	87.393	ENSHBUG00000007581	srl	99	88.571	Haplochromis_burtoni
ENSLOCG00000002644	srl	96	84.956	ENSHGLG00000015271	SRL	99	83.156	Heterocephalus_glaber_female
ENSLOCG00000002644	srl	96	84.956	ENSHGLG00100019378	SRL	99	83.156	Heterocephalus_glaber_male
ENSLOCG00000002644	srl	94	74.505	ENSHCOG00000001012	SRL	50	74.505	Hippocampus_comes
ENSLOCG00000002644	srl	99	86.325	ENSHCOG00000008687	srl	99	88.667	Hippocampus_comes
ENSLOCG00000002644	srl	93	70.183	ENSIPUG00000011609	SRL	95	70.183	Ictalurus_punctatus
ENSLOCG00000002644	srl	99	86.994	ENSIPUG00000012513	srl	99	86.994	Ictalurus_punctatus
ENSLOCG00000002644	srl	97	84.061	ENSSTOG00000021151	-	99	82.942	Ictidomys_tridecemlineatus
ENSLOCG00000002644	srl	99	82.833	ENSJJAG00000016400	Srl	99	82.833	Jaculus_jaculus
ENSLOCG00000002644	srl	94	77.778	ENSKMAG00000019537	SRL	100	77.778	Kryptolebias_marmoratus
ENSLOCG00000002644	srl	97	86.652	ENSKMAG00000014115	srl	93	91.211	Kryptolebias_marmoratus
ENSLOCG00000002644	srl	99	87.580	ENSLBEG00000026643	srl	99	87.580	Labrus_bergylta
ENSLOCG00000002644	srl	97	76.471	ENSLBEG00000013811	SRL	99	76.471	Labrus_bergylta
ENSLOCG00000002644	srl	96	84.956	ENSLACG00000002825	SRL	100	84.956	Latimeria_chalumnae
ENSLOCG00000002644	srl	96	84.768	ENSLAFG00000006329	SRL	52	84.768	Loxodonta_africana
ENSLOCG00000002644	srl	92	86.047	ENSMFAG00000037383	SRL	99	86.047	Macaca_fascicularis
ENSLOCG00000002644	srl	99	82.766	ENSMNEG00000019236	-	99	82.766	Macaca_nemestrina
ENSLOCG00000002644	srl	97	77.093	ENSMLEG00000032156	SRL	99	75.957	Mandrillus_leucophaeus
ENSLOCG00000002644	srl	95	75.711	ENSMAMG00000013756	SRL	53	75.930	Mastacembelus_armatus
ENSLOCG00000002644	srl	94	90.745	ENSMAMG00000023322	srl	100	86.624	Mastacembelus_armatus
ENSLOCG00000002644	srl	99	87.393	ENSMZEG00005004548	srl	99	88.571	Maylandia_zebra
ENSLOCG00000002644	srl	96	74.837	ENSMZEG00005004010	SRL	58	75.271	Maylandia_zebra
ENSLOCG00000002644	srl	96	85.619	ENSMGAG00000009342	SRL	95	87.798	Meleagris_gallopavo
ENSLOCG00000002644	srl	98	84.532	ENSMICG00000032307	SRL	99	83.547	Microcebus_murinus
ENSLOCG00000002644	srl	99	82.340	ENSMOCG00000008208	Srl	99	82.340	Microtus_ochrogaster
ENSLOCG00000002644	srl	95	75.328	ENSMMOG00000021572	SRL	100	75.328	Mola_mola
ENSLOCG00000002644	srl	96	88.641	ENSMMOG00000013970	srl	99	88.641	Mola_mola
ENSLOCG00000002644	srl	97	84.581	ENSMODG00000016380	-	51	84.581	Monodelphis_domestica
ENSLOCG00000002644	srl	89	77.327	ENSMALG00000000670	SRL	98	77.327	Monopterus_albus
ENSLOCG00000002644	srl	96	87.973	ENSMALG00000005039	srl	99	88.341	Monopterus_albus
ENSLOCG00000002644	srl	96	84.768	MGP_CAROLIEiJ_G0020400	Srl	99	82.942	Mus_caroli
ENSLOCG00000002644	srl	96	84.768	ENSMUSG00000022519	Srl	99	82.942	Mus_musculus
ENSLOCG00000002644	srl	96	84.768	MGP_SPRETEiJ_G0021294	Srl	99	82.942	Mus_spretus
ENSLOCG00000002644	srl	96	84.547	ENSMPUG00000015025	SRL	55	84.547	Mustela_putorius_furo
ENSLOCG00000002644	srl	97	85.055	ENSMLUG00000030733	SRL	57	85.055	Myotis_lucifugus
ENSLOCG00000002644	srl	94	85.294	ENSNGAG00000019741	Srl	99	82.303	Nannospalax_galili
ENSLOCG00000002644	srl	96	74.403	ENSNBRG00000002422	SRL	61	71.218	Neolamprologus_brichardi
ENSLOCG00000002644	srl	100	87.207	ENSNBRG00000023775	srl	99	87.207	Neolamprologus_brichardi
ENSLOCG00000002644	srl	94	79.638	ENSNLEG00000029051	SRL	99	77.234	Nomascus_leucogenys
ENSLOCG00000002644	srl	97	77.729	ENSOPRG00000000477	-	54	77.729	Ochotona_princeps
ENSLOCG00000002644	srl	94	85.294	ENSODEG00000013256	SRL	99	82.090	Octodon_degus
ENSLOCG00000002644	srl	98	88.286	ENSONIG00000005192	srl	97	88.286	Oreochromis_niloticus
ENSLOCG00000002644	srl	97	83.843	ENSOCUG00000025140	SRL	50	83.843	Oryctolagus_cuniculus
ENSLOCG00000002644	srl	96	75.223	ENSORLG00000015064	SRL	98	75.223	Oryzias_latipes
ENSLOCG00000002644	srl	94	89.391	ENSORLG00000008291	srl	92	91.753	Oryzias_latipes
ENSLOCG00000002644	srl	94	89.616	ENSORLG00020019784	srl	79	92.010	Oryzias_latipes_hni
ENSLOCG00000002644	srl	96	75.446	ENSORLG00020018173	SRL	98	75.446	Oryzias_latipes_hni
ENSLOCG00000002644	srl	94	89.165	ENSORLG00015009342	srl	96	86.510	Oryzias_latipes_hsok
ENSLOCG00000002644	srl	96	75.670	ENSORLG00015019063	SRL	98	75.670	Oryzias_latipes_hsok
ENSLOCG00000002644	srl	95	88.539	ENSOMEG00000010006	srl	99	88.539	Oryzias_melastigma
ENSLOCG00000002644	srl	94	73.465	ENSOMEG00000005682	SRL	53	73.684	Oryzias_melastigma
ENSLOCG00000002644	srl	97	84.396	ENSOGAG00000029266	SRL	55	84.396	Otolemur_garnettii
ENSLOCG00000002644	srl	97	84.061	ENSOARG00000003074	SRL	57	84.061	Ovis_aries
ENSLOCG00000002644	srl	97	84.581	ENSPPAG00000024919	-	99	86.047	Pan_paniscus
ENSLOCG00000002644	srl	99	82.766	ENSPPRG00000010274	SRL	99	85.814	Panthera_pardus
ENSLOCG00000002644	srl	99	82.766	ENSPTIG00000015162	SRL	99	85.814	Panthera_tigris_altaica
ENSLOCG00000002644	srl	97	84.581	ENSPTRG00000007712	SRL	99	86.047	Pan_troglodytes
ENSLOCG00000002644	srl	97	84.279	ENSPANG00000013804	SRL	98	84.279	Papio_anubis
ENSLOCG00000002644	srl	99	89.149	ENSPKIG00000006405	srl	99	89.149	Paramormyrops_kingsleyae
ENSLOCG00000002644	srl	99	78.846	ENSPKIG00000024974	SRL	93	78.846	Paramormyrops_kingsleyae
ENSLOCG00000002644	srl	96	85.144	ENSPSIG00000008586	SRL	50	85.144	Pelodiscus_sinensis
ENSLOCG00000002644	srl	94	75.395	ENSPMGG00000023505	-	100	75.395	Periophthalmus_magnuspinnatus
ENSLOCG00000002644	srl	96	90.687	ENSPMGG00000021081	srl	97	90.687	Periophthalmus_magnuspinnatus
ENSLOCG00000002644	srl	96	84.292	ENSPEMG00000015842	Srl	99	82.340	Peromyscus_maniculatus_bairdii
ENSLOCG00000002644	srl	90	67.890	ENSPMAG00000004786	srl	99	68.519	Petromyzon_marinus
ENSLOCG00000002644	srl	96	84.922	ENSPCIG00000012128	SRL	99	84.922	Phascolarctos_cinereus
ENSLOCG00000002644	srl	98	84.989	ENSPFOG00000011408	srl	97	84.989	Poecilia_formosa
ENSLOCG00000002644	srl	98	87.391	ENSPLAG00000008017	srl	99	87.391	Poecilia_latipinna
ENSLOCG00000002644	srl	94	76.697	ENSPLAG00000002932	SRL	98	76.697	Poecilia_latipinna
ENSLOCG00000002644	srl	94	74.725	ENSPMEG00000005890	SRL	59	75.385	Poecilia_mexicana
ENSLOCG00000002644	srl	98	87.391	ENSPMEG00000006745	srl	99	87.391	Poecilia_mexicana
ENSLOCG00000002644	srl	94	89.616	ENSPREG00000007751	srl	98	89.616	Poecilia_reticulata
ENSLOCG00000002644	srl	96	76.615	ENSPREG00000000315	SRL	100	76.615	Poecilia_reticulata
ENSLOCG00000002644	srl	89	86.396	ENSPPYG00000007053	SRL	98	86.396	Pongo_abelii
ENSLOCG00000002644	srl	97	84.802	ENSPCAG00000003378	-	51	84.802	Procavia_capensis
ENSLOCG00000002644	srl	97	84.802	ENSPCOG00000023135	SRL	99	85.814	Propithecus_coquereli
ENSLOCG00000002644	srl	96	85.210	ENSPVAG00000006586	SRL	56	85.210	Pteropus_vampyrus
ENSLOCG00000002644	srl	100	86.994	ENSPNYG00000001200	srl	99	88.352	Pundamilia_nyererei
ENSLOCG00000002644	srl	96	74.837	ENSPNYG00000003423	SRL	57	75.271	Pundamilia_nyererei
ENSLOCG00000002644	srl	95	75.225	ENSPNAG00000007361	-	91	75.225	Pygocentrus_nattereri
ENSLOCG00000002644	srl	99	88.223	ENSPNAG00000023106	srl	99	88.223	Pygocentrus_nattereri
ENSLOCG00000002644	srl	96	84.547	ENSRNOG00000005269	Srl	50	84.547	Rattus_norvegicus
ENSLOCG00000002644	srl	97	83.843	ENSRBIG00000042358	SRL	51	83.843	Rhinopithecus_bieti
ENSLOCG00000002644	srl	94	86.425	ENSSBOG00000029273	SRL	99	83.617	Saimiri_boliviensis_boliviensis
ENSLOCG00000002644	srl	97	84.176	ENSSHAG00000011715	-	51	84.176	Sarcophilus_harrisii
ENSLOCG00000002644	srl	99	88.627	ENSSFOG00015009773	srl	99	88.627	Scleropages_formosus
ENSLOCG00000002644	srl	95	79.372	ENSSFOG00015021327	SRL	50	79.372	Scleropages_formosus
ENSLOCG00000002644	srl	94	75.824	ENSSMAG00000002232	SRL	50	76.484	Scophthalmus_maximus
ENSLOCG00000002644	srl	96	89.087	ENSSMAG00000016274	srl	98	89.087	Scophthalmus_maximus
ENSLOCG00000002644	srl	96	89.062	ENSSDUG00000010808	srl	99	89.062	Seriola_dumerili
ENSLOCG00000002644	srl	95	77.384	ENSSDUG00000009161	SRL	99	77.384	Seriola_dumerili
ENSLOCG00000002644	srl	96	89.087	ENSSLDG00000022024	srl	99	87.905	Seriola_lalandi_dorsalis
ENSLOCG00000002644	srl	94	76.974	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSLOCG00000002644	srl	96	85.177	ENSSPUG00000016859	SRL	99	85.177	Sphenodon_punctatus
ENSLOCG00000002644	srl	95	75.901	ENSSPAG00000014254	SRL	99	75.901	Stegastes_partitus
ENSLOCG00000002644	srl	99	87.821	ENSSPAG00000019105	srl	99	87.821	Stegastes_partitus
ENSLOCG00000002644	srl	96	84.956	ENSSSCG00000007949	SRL	98	85.941	Sus_scrofa
ENSLOCG00000002644	srl	97	84.989	ENSTGUG00000003951	-	99	84.989	Taeniopygia_guttata
ENSLOCG00000002644	srl	77	87.017	ENSTGUG00000016121	-	100	87.017	Taeniopygia_guttata
ENSLOCG00000002644	srl	89	78.520	ENSTRUG00000013310	SRL	55	78.520	Takifugu_rubripes
ENSLOCG00000002644	srl	99	86.724	ENSTRUG00000006005	srl	99	86.724	Takifugu_rubripes
ENSLOCG00000002644	srl	96	88.196	ENSTNIG00000009739	srl	99	86.882	Tetraodon_nigroviridis
ENSLOCG00000002644	srl	97	84.141	ENSUAMG00000005701	SRL	56	84.141	Ursus_americanus
ENSLOCG00000002644	srl	97	84.361	ENSUMAG00000002574	SRL	56	84.361	Ursus_maritimus
ENSLOCG00000002644	srl	97	84.176	ENSVVUG00000016331	-	50	84.176	Vulpes_vulpes
ENSLOCG00000002644	srl	100	82.090	ENSXETG00000017313	srl	100	84.257	Xenopus_tropicalis
ENSLOCG00000002644	srl	90	91.449	ENSXCOG00000010424	srl	97	91.449	Xiphophorus_couchianus
ENSLOCG00000002644	srl	94	77.828	ENSXCOG00000014584	SRL	98	77.828	Xiphophorus_couchianus
ENSLOCG00000002644	srl	94	90.068	ENSXMAG00000004625	srl	95	87.152	Xiphophorus_maculatus
ENSLOCG00000002644	srl	94	75.385	ENSXMAG00000027598	SRL	62	76.044	Xiphophorus_maculatus