EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000002657 (Gene tree)
Gene ID: 102691096
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 24911 bases
Position: chrLG12:4711379-4736289
Accession: 102691096
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000003151	Rif1_N	PF12231.8	1.7e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000003158	-	6811	XM_006636346	ENSLOCP00000003151	2179 (aa)	-	W5M443

Gene Model

Click here to download ENSLOCG00000002657's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000002657's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000002657	rif1	82	51.613	ENSG00000080345	RIF1	88	61.784	Homo_sapiens
ENSLOCG00000002657	rif1	77	58.333	ENSAPOG00000011073	rif1	76	54.737	Acanthochromis_polyacanthus
ENSLOCG00000002657	rif1	82	53.094	ENSAMEG00000008461	RIF1	63	54.712	Ailuropoda_melanoleuca
ENSLOCG00000002657	rif1	74	60.933	ENSACIG00000017765	rif1	71	60.058	Amphilophus_citrinellus
ENSLOCG00000002657	rif1	77	58.357	ENSAOCG00000017231	rif1	78	57.224	Amphiprion_ocellaris
ENSLOCG00000002657	rif1	77	52.993	ENSAPEG00000013228	rif1	77	49.390	Amphiprion_percula
ENSLOCG00000002657	rif1	82	59.770	ENSATEG00000022887	rif1	99	44.383	Anabas_testudineus
ENSLOCG00000002657	rif1	98	44.844	ENSAPLG00000007092	RIF1	90	50.000	Anas_platyrhynchos
ENSLOCG00000002657	rif1	67	44.969	ENSACAG00000003714	RIF1	54	49.809	Anolis_carolinensis
ENSLOCG00000002657	rif1	83	48.780	ENSANAG00000024840	RIF1	64	53.510	Aotus_nancymaae
ENSLOCG00000002657	rif1	100	51.188	ENSAMXG00000010910	rif1	99	51.455	Astyanax_mexicanus
ENSLOCG00000002657	rif1	81	47.782	ENSBTAG00000021020	RIF1	65	55.596	Bos_taurus
ENSLOCG00000002657	rif1	82	50.161	ENSCJAG00000003138	RIF1	62	54.466	Callithrix_jacchus
ENSLOCG00000002657	rif1	69	52.573	ENSCAFG00000005670	RIF1	60	52.811	Canis_familiaris
ENSLOCG00000002657	rif1	69	52.573	ENSCAFG00020016401	RIF1	63	52.890	Canis_lupus_dingo
ENSLOCG00000002657	rif1	88	47.434	ENSCHIG00000020327	RIF1	69	53.297	Capra_hircus
ENSLOCG00000002657	rif1	82	52.090	ENSTSYG00000008861	RIF1	62	51.491	Carlito_syrichta
ENSLOCG00000002657	rif1	77	38.642	ENSCAPG00000008957	RIF1	82	42.378	Cavia_aperea
ENSLOCG00000002657	rif1	87	46.637	ENSCPOG00000037898	RIF1	83	46.951	Cavia_porcellus
ENSLOCG00000002657	rif1	71	52.711	ENSCCAG00000024760	RIF1	62	52.791	Cebus_capucinus
ENSLOCG00000002657	rif1	82	51.923	ENSCATG00000033353	RIF1	62	54.022	Cercocebus_atys
ENSLOCG00000002657	rif1	78	51.140	ENSCLAG00000001517	RIF1	63	53.586	Chinchilla_lanigera
ENSLOCG00000002657	rif1	82	52.244	ENSCSAG00000016089	RIF1	63	54.101	Chlorocebus_sabaeus
ENSLOCG00000002657	rif1	86	54.185	ENSCHOG00000007187	RIF1	60	54.185	Choloepus_hoffmanni
ENSLOCG00000002657	rif1	96	55.961	ENSCPBG00000025885	RIF1	89	52.329	Chrysemys_picta_bellii
ENSLOCG00000002657	rif1	78	62.559	ENSCANG00000028962	RIF1	61	60.190	Colobus_angolensis_palliatus
ENSLOCG00000002657	rif1	83	47.748	ENSCGRG00001024589	Rif1	65	51.246	Cricetulus_griseus_chok1gshd
ENSLOCG00000002657	rif1	82	47.748	ENSCGRG00000010713	Rif1	65	52.829	Cricetulus_griseus_crigri
ENSLOCG00000002657	rif1	78	63.121	ENSCSEG00000003945	rif1	66	62.057	Cynoglossus_semilaevis
ENSLOCG00000002657	rif1	82	56.091	ENSCVAG00000022479	rif1	68	55.939	Cyprinodon_variegatus
ENSLOCG00000002657	rif1	98	55.712	ENSDARG00000062650	rif1	86	59.062	Danio_rerio
ENSLOCG00000002657	rif1	83	49.541	ENSDNOG00000011194	RIF1	80	48.923	Dasypus_novemcinctus
ENSLOCG00000002657	rif1	69	50.039	ENSETEG00000012421	RIF1	66	49.961	Echinops_telfairi
ENSLOCG00000002657	rif1	75	69.333	ENSEASG00005023434	RIF1	78	69.333	Equus_asinus_asinus
ENSLOCG00000002657	rif1	84	51.299	ENSECAG00000012679	RIF1	62	54.353	Equus_caballus
ENSLOCG00000002657	rif1	84	59.635	ENSELUG00000006826	rif1	70	58.854	Esox_lucius
ENSLOCG00000002657	rif1	82	52.769	ENSFCAG00000029742	RIF1	62	54.712	Felis_catus
ENSLOCG00000002657	rif1	82	51.198	ENSFALG00000013874	RIF1	93	57.196	Ficedula_albicollis
ENSLOCG00000002657	rif1	82	50.485	ENSFDAG00000006538	RIF1	63	53.468	Fukomys_damarensis
ENSLOCG00000002657	rif1	83	56.056	ENSFHEG00000013721	rif1	77	55.775	Fundulus_heteroclitus
ENSLOCG00000002657	rif1	66	63.415	ENSGMOG00000003517	rif1	99	58.537	Gadus_morhua
ENSLOCG00000002657	rif1	93	43.750	ENSGALG00000012484	RIF1	51	55.989	Gallus_gallus
ENSLOCG00000002657	rif1	89	58.610	ENSGAFG00000017196	rif1	84	57.704	Gambusia_affinis
ENSLOCG00000002657	rif1	85	58.781	ENSGACG00000008579	rif1	83	58.065	Gasterosteus_aculeatus
ENSLOCG00000002657	rif1	99	51.187	ENSGAGG00000012595	RIF1	98	52.235	Gopherus_agassizii
ENSLOCG00000002657	rif1	73	62.089	ENSGGOG00000040178	RIF1	52	62.089	Gorilla_gorilla
ENSLOCG00000002657	rif1	73	51.683	ENSHBUG00000007125	rif1	81	66.052	Haplochromis_burtoni
ENSLOCG00000002657	rif1	78	55.435	ENSHGLG00100009807	RIF1	82	55.495	Heterocephalus_glaber_male
ENSLOCG00000002657	rif1	81	53.448	ENSHCOG00000015943	rif1	68	52.874	Hippocampus_comes
ENSLOCG00000002657	rif1	83	66.066	ENSIPUG00000021703	rif1	76	65.465	Ictalurus_punctatus
ENSLOCG00000002657	rif1	82	50.000	ENSSTOG00000020712	RIF1	63	54.212	Ictidomys_tridecemlineatus
ENSLOCG00000002657	rif1	85	45.596	ENSJJAG00000023000	Rif1	66	50.607	Jaculus_jaculus
ENSLOCG00000002657	rif1	90	51.102	ENSKMAG00000002852	rif1	85	50.908	Kryptolebias_marmoratus
ENSLOCG00000002657	rif1	78	64.164	ENSLBEG00000023196	rif1	67	62.457	Labrus_bergylta
ENSLOCG00000002657	rif1	88	50.305	ENSLACG00000005425	RIF1	83	51.648	Latimeria_chalumnae
ENSLOCG00000002657	rif1	82	52.733	ENSLAFG00000009796	RIF1	64	54.396	Loxodonta_africana
ENSLOCG00000002657	rif1	82	52.244	ENSMFAG00000032233	RIF1	62	53.943	Macaca_fascicularis
ENSLOCG00000002657	rif1	82	52.244	ENSMMUG00000008611	RIF1	62	53.943	Macaca_mulatta
ENSLOCG00000002657	rif1	82	52.244	ENSMNEG00000031616	RIF1	62	54.124	Macaca_nemestrina
ENSLOCG00000002657	rif1	82	51.923	ENSMLEG00000042945	RIF1	62	54.022	Mandrillus_leucophaeus
ENSLOCG00000002657	rif1	82	62.614	ENSMAMG00000001745	rif1	66	61.702	Mastacembelus_armatus
ENSLOCG00000002657	rif1	79	56.537	ENSMZEG00005020920	rif1	79	56.300	Maylandia_zebra
ENSLOCG00000002657	rif1	98	44.043	ENSMGAG00000012732	RIF1	99	43.709	Meleagris_gallopavo
ENSLOCG00000002657	rif1	76	67.042	ENSMAUG00000013158	Rif1	62	67.042	Mesocricetus_auratus
ENSLOCG00000002657	rif1	84	51.935	ENSMICG00000046127	RIF1	62	54.924	Microcebus_murinus
ENSLOCG00000002657	rif1	83	50.962	ENSMOCG00000009381	Rif1	64	51.770	Microtus_ochrogaster
ENSLOCG00000002657	rif1	83	58.182	ENSMMOG00000006519	rif1	75	56.970	Mola_mola
ENSLOCG00000002657	rif1	82	50.804	ENSMODG00000003703	RIF1	85	50.804	Monodelphis_domestica
ENSLOCG00000002657	rif1	83	53.652	ENSMALG00000016759	rif1	86	56.980	Monopterus_albus
ENSLOCG00000002657	rif1	82	50.321	MGP_CAROLIEiJ_G0023555	Rif1	63	54.006	Mus_caroli
ENSLOCG00000002657	rif1	82	49.521	ENSMUSG00000036202	Rif1	64	52.955	Mus_musculus
ENSLOCG00000002657	rif1	82	48.589	MGP_PahariEiJ_G0025006	Rif1	63	51.262	Mus_pahari
ENSLOCG00000002657	rif1	82	49.679	MGP_SPRETEiJ_G0024476	Rif1	65	53.344	Mus_spretus
ENSLOCG00000002657	rif1	82	52.443	ENSMPUG00000000371	RIF1	62	54.633	Mustela_putorius_furo
ENSLOCG00000002657	rif1	73	50.804	ENSMLUG00000003376	RIF1	60	50.439	Myotis_lucifugus
ENSLOCG00000002657	rif1	82	48.408	ENSNGAG00000009268	Rif1	84	49.191	Nannospalax_galili
ENSLOCG00000002657	rif1	79	60.111	ENSNBRG00000014257	rif1	80	59.280	Neolamprologus_brichardi
ENSLOCG00000002657	rif1	84	47.013	ENSNLEG00000010955	RIF1	63	53.557	Nomascus_leucogenys
ENSLOCG00000002657	rif1	58	65.639	ENSMEUG00000007601	-	75	65.639	Notamacropus_eugenii
ENSLOCG00000002657	rif1	87	45.180	ENSODEG00000003950	RIF1	68	50.667	Octodon_degus
ENSLOCG00000002657	rif1	85	58.133	ENSONIG00000013657	rif1	82	58.678	Oreochromis_niloticus
ENSLOCG00000002657	rif1	69	70.270	ENSOANG00000006078	-	71	70.270	Ornithorhynchus_anatinus
ENSLOCG00000002657	rif1	91	47.293	ENSOCUG00000017435	RIF1	83	47.139	Oryctolagus_cuniculus
ENSLOCG00000002657	rif1	87	53.804	ENSORLG00020001302	rif1	83	53.261	Oryzias_latipes_hni
ENSLOCG00000002657	rif1	81	53.804	ENSORLG00015000009	rif1	78	53.261	Oryzias_latipes_hsok
ENSLOCG00000002657	rif1	80	55.587	ENSOMEG00000021513	rif1	55	55.959	Oryzias_melastigma
ENSLOCG00000002657	rif1	89	46.910	ENSOGAG00000006141	RIF1	63	54.916	Otolemur_garnettii
ENSLOCG00000002657	rif1	89	47.460	ENSOARG00000008930	RIF1	64	53.876	Ovis_aries
ENSLOCG00000002657	rif1	82	51.290	ENSPPAG00000023754	RIF1	62	53.785	Pan_paniscus
ENSLOCG00000002657	rif1	82	52.769	ENSPPRG00000003618	RIF1	62	54.712	Panthera_pardus
ENSLOCG00000002657	rif1	82	52.769	ENSPTIG00000020652	RIF1	62	54.712	Panthera_tigris_altaica
ENSLOCG00000002657	rif1	82	51.613	ENSPTRG00000012534	RIF1	62	53.785	Pan_troglodytes
ENSLOCG00000002657	rif1	82	52.244	ENSPANG00000008525	RIF1	62	54.022	Papio_anubis
ENSLOCG00000002657	rif1	99	56.592	ENSPKIG00000004267	rif1	94	56.472	Paramormyrops_kingsleyae
ENSLOCG00000002657	rif1	81	59.394	ENSPMGG00000016141	rif1	87	58.485	Periophthalmus_magnuspinnatus
ENSLOCG00000002657	rif1	88	48.139	ENSPEMG00000000446	Rif1	64	53.446	Peromyscus_maniculatus_bairdii
ENSLOCG00000002657	rif1	81	50.804	ENSPCIG00000009185	RIF1	65	53.165	Phascolarctos_cinereus
ENSLOCG00000002657	rif1	76	60.366	ENSPFOG00000000554	-	81	59.451	Poecilia_formosa
ENSLOCG00000002657	rif1	83	59.760	ENSPFOG00000017804	rif1	82	58.859	Poecilia_formosa
ENSLOCG00000002657	rif1	83	60.366	ENSPLAG00000017945	rif1	79	58.333	Poecilia_latipinna
ENSLOCG00000002657	rif1	72	56.374	ENSPMEG00000006897	-	64	57.696	Poecilia_mexicana
ENSLOCG00000002657	rif1	83	57.231	ENSPREG00000018052	rif1	66	63.078	Poecilia_reticulata
ENSLOCG00000002657	rif1	82	51.935	ENSPPYG00000012846	RIF1	62	54.101	Pongo_abelii
ENSLOCG00000002657	rif1	58	60.825	ENSPCAG00000009032	RIF1	60	60.825	Procavia_capensis
ENSLOCG00000002657	rif1	83	50.456	ENSPCOG00000027888	RIF1	63	54.960	Propithecus_coquereli
ENSLOCG00000002657	rif1	77	61.382	ENSPVAG00000014276	RIF1	70	61.382	Pteropus_vampyrus
ENSLOCG00000002657	rif1	63	54.770	ENSPNYG00000012940	rif1	62	52.997	Pundamilia_nyererei
ENSLOCG00000002657	rif1	100	55.034	ENSPNAG00000016685	rif1	95	55.839	Pygocentrus_nattereri
ENSLOCG00000002657	rif1	82	47.937	ENSRNOG00000054901	Rif1	64	50.622	Rattus_norvegicus
ENSLOCG00000002657	rif1	82	52.581	ENSRBIG00000003704	RIF1	62	53.275	Rhinopithecus_bieti
ENSLOCG00000002657	rif1	82	52.903	ENSRROG00000028206	RIF1	62	54.180	Rhinopithecus_roxellana
ENSLOCG00000002657	rif1	66	53.731	ENSSBOG00000029530	RIF1	61	53.731	Saimiri_boliviensis_boliviensis
ENSLOCG00000002657	rif1	86	51.592	ENSSHAG00000018552	RIF1	65	53.039	Sarcophilus_harrisii
ENSLOCG00000002657	rif1	75	54.514	ENSSFOG00015021539	rif1	76	54.450	Scleropages_formosus
ENSLOCG00000002657	rif1	83	61.468	ENSSMAG00000011704	rif1	79	60.550	Scophthalmus_maximus
ENSLOCG00000002657	rif1	81	57.341	ENSSDUG00000015632	rif1	88	53.571	Seriola_dumerili
ENSLOCG00000002657	rif1	84	56.522	ENSSLDG00000019531	rif1	88	50.977	Seriola_lalandi_dorsalis
ENSLOCG00000002657	rif1	98	43.172	ENSSPUG00000003062	RIF1	66	54.202	Sphenodon_punctatus
ENSLOCG00000002657	rif1	70	62.200	ENSSPAG00000018359	rif1	92	62.200	Stegastes_partitus
ENSLOCG00000002657	rif1	85	50.613	ENSSSCG00000016395	RIF1	64	53.972	Sus_scrofa
ENSLOCG00000002657	rif1	83	53.338	ENSTRUG00000015808	rif1	70	57.973	Takifugu_rubripes
ENSLOCG00000002657	rif1	87	55.707	ENSTNIG00000011538	rif1	81	58.410	Tetraodon_nigroviridis
ENSLOCG00000002657	rif1	73	56.364	ENSTBEG00000016082	RIF1	54	56.364	Tupaia_belangeri
ENSLOCG00000002657	rif1	83	50.305	ENSTTRG00000011190	RIF1	63	53.914	Tursiops_truncatus
ENSLOCG00000002657	rif1	74	53.094	ENSUAMG00000026385	RIF1	72	52.117	Ursus_americanus
ENSLOCG00000002657	rif1	86	53.094	ENSUMAG00000000337	RIF1	70	55.630	Ursus_maritimus
ENSLOCG00000002657	rif1	83	49.390	ENSVPAG00000002162	RIF1	63	52.006	Vicugna_pacos
ENSLOCG00000002657	rif1	80	50.838	ENSVVUG00000011293	RIF1	70	51.466	Vulpes_vulpes
ENSLOCG00000002657	rif1	100	49.492	ENSXETG00000004530	rif1	83	54.711	Xenopus_tropicalis
ENSLOCG00000002657	rif1	88	48.348	ENSXMAG00000000506	rif1	81	47.948	Xiphophorus_maculatus