EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000003045 (Gene tree)
Gene ID: 102693671
Gene Symbol: ythdc1
Alias: zgc:101592
Full Name: YTH domain containing 1
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 23828 bases
Position: chrLG2:7630069-7653896
Accession: 102693671
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000003603	YTH	PF04146.15	1.3e-41	1	1
ENSLOCP00000003586	YTH	PF04146.15	1.6e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000003593	-	3299	XM_015362745	ENSLOCP00000003586	765 (aa)	XP_015218231	W5M5C8
ENSLOCT00000003610	-	3131	XM_006626575	ENSLOCP00000003603	666 (aa)	-	W5M5E5

Gene Model

Click here to download ENSLOCG00000003045's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003045's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003045	ythdc1	92	88.702	ENSG00000083896	YTHDC1	82	89.610	Homo_sapiens
ENSLOCG00000003045	ythdc1	52	68.497	ENSAPOG00000013997	ythdc1	93	55.947	Acanthochromis_polyacanthus
ENSLOCG00000003045	ythdc1	92	89.183	ENSAMEG00000005688	YTHDC1	93	73.049	Ailuropoda_melanoleuca
ENSLOCG00000003045	ythdc1	92	53.958	ENSACIG00000019728	ythdc1	93	55.556	Amphilophus_citrinellus
ENSLOCG00000003045	ythdc1	52	70.027	ENSAOCG00000000239	ythdc1	94	57.610	Amphiprion_ocellaris
ENSLOCG00000003045	ythdc1	91	72.897	ENSAPLG00000009921	YTHDC1	92	73.053	Anas_platyrhynchos
ENSLOCG00000003045	ythdc1	92	70.348	ENSACAG00000009697	YTHDC1	93	71.726	Anolis_carolinensis
ENSLOCG00000003045	ythdc1	92	88.702	ENSANAG00000001522	YTHDC1	93	73.708	Aotus_nancymaae
ENSLOCG00000003045	ythdc1	87	55.252	ENSACLG00000019371	ythdc1	94	58.106	Astatotilapia_calliptera
ENSLOCG00000003045	ythdc1	92	71.280	ENSAMXG00000006978	ythdc1	92	74.524	Astyanax_mexicanus
ENSLOCG00000003045	ythdc1	92	87.981	ENSBTAG00000015572	YTHDC1	93	72.821	Bos_taurus
ENSLOCG00000003045	ythdc1	92	88.702	ENSCJAG00000009934	YTHDC1	93	73.560	Callithrix_jacchus
ENSLOCG00000003045	ythdc1	92	89.183	ENSCAFG00000002821	YTHDC1	93	73.049	Canis_familiaris
ENSLOCG00000003045	ythdc1	92	89.183	ENSCAFG00020027112	YTHDC1	93	73.049	Canis_lupus_dingo
ENSLOCG00000003045	ythdc1	91	75.708	ENSCHIG00000004810	YTHDC1	91	71.146	Capra_hircus
ENSLOCG00000003045	ythdc1	92	88.702	ENSTSYG00000011668	YTHDC1	93	73.225	Carlito_syrichta
ENSLOCG00000003045	ythdc1	89	52.009	ENSCAPG00000008722	YTHDC1	90	50.901	Cavia_aperea
ENSLOCG00000003045	ythdc1	92	78.606	ENSCPOG00000010929	YTHDC1	92	65.630	Cavia_porcellus
ENSLOCG00000003045	ythdc1	92	88.702	ENSCCAG00000035754	YTHDC1	93	73.481	Cebus_capucinus
ENSLOCG00000003045	ythdc1	92	87.028	ENSCATG00000036320	YTHDC1	93	73.431	Cercocebus_atys
ENSLOCG00000003045	ythdc1	86	72.889	ENSCLAG00000005482	YTHDC1	92	73.254	Chinchilla_lanigera
ENSLOCG00000003045	ythdc1	92	88.702	ENSCSAG00000005252	YTHDC1	93	73.560	Chlorocebus_sabaeus
ENSLOCG00000003045	ythdc1	91	73.178	ENSCPBG00000021965	YTHDC1	94	72.960	Chrysemys_picta_bellii
ENSLOCG00000003045	ythdc1	92	88.702	ENSCANG00000004769	YTHDC1	93	73.560	Colobus_angolensis_palliatus
ENSLOCG00000003045	ythdc1	92	86.792	ENSCGRG00001000816	Ythdc1	93	72.661	Cricetulus_griseus_chok1gshd
ENSLOCG00000003045	ythdc1	91	88.462	ENSCGRG00000009807	Ythdc1	92	73.013	Cricetulus_griseus_crigri
ENSLOCG00000003045	ythdc1	62	61.319	ENSCSEG00000020404	ythdc1	94	56.652	Cynoglossus_semilaevis
ENSLOCG00000003045	ythdc1	63	61.454	ENSCVAG00000022349	ythdc1	94	56.330	Cyprinodon_variegatus
ENSLOCG00000003045	ythdc1	92	69.300	ENSDARG00000051953	ythdc1	92	70.631	Danio_rerio
ENSLOCG00000003045	ythdc1	92	69.896	ENSDNOG00000004949	YTHDC1	93	73.254	Dasypus_novemcinctus
ENSLOCG00000003045	ythdc1	90	88.702	ENSDORG00000013045	Ythdc1	92	72.714	Dipodomys_ordii
ENSLOCG00000003045	ythdc1	76	92.958	ENSETEG00000001878	YTHDC1	69	92.208	Echinops_telfairi
ENSLOCG00000003045	ythdc1	92	89.183	ENSEASG00005018383	YTHDC1	93	73.196	Equus_asinus_asinus
ENSLOCG00000003045	ythdc1	92	89.183	ENSECAG00000018303	YTHDC1	96	70.058	Equus_caballus
ENSLOCG00000003045	ythdc1	89	87.981	ENSEEUG00000015466	YTHDC1	93	72.419	Erinaceus_europaeus
ENSLOCG00000003045	ythdc1	92	66.906	ENSELUG00000014029	ythdc1	95	68.546	Esox_lucius
ENSLOCG00000003045	ythdc1	92	89.183	ENSFCAG00000026791	YTHDC1	93	73.599	Felis_catus
ENSLOCG00000003045	ythdc1	67	90.281	ENSFALG00000006581	YTHDC1	87	90.281	Ficedula_albicollis
ENSLOCG00000003045	ythdc1	90	88.221	ENSFDAG00000018560	YTHDC1	92	73.494	Fukomys_damarensis
ENSLOCG00000003045	ythdc1	66	54.885	ENSFHEG00000001286	ythdc1	81	48.221	Fundulus_heteroclitus
ENSLOCG00000003045	ythdc1	61	79.803	ENSGMOG00000018815	ythdc1	65	79.803	Gadus_morhua
ENSLOCG00000003045	ythdc1	91	72.826	ENSGALG00000035906	YTHDC1	85	73.002	Gallus_gallus
ENSLOCG00000003045	ythdc1	69	54.681	ENSGAFG00000001759	ythdc1	91	54.989	Gambusia_affinis
ENSLOCG00000003045	ythdc1	92	52.899	ENSGACG00000015486	ythdc1	94	49.931	Gasterosteus_aculeatus
ENSLOCG00000003045	ythdc1	91	71.713	ENSGAGG00000007108	YTHDC1	91	73.134	Gopherus_agassizii
ENSLOCG00000003045	ythdc1	92	87.028	ENSGGOG00000021958	YTHDC1	93	73.431	Gorilla_gorilla
ENSLOCG00000003045	ythdc1	87	55.396	ENSHBUG00000019288	ythdc1	93	58.250	Haplochromis_burtoni
ENSLOCG00000003045	ythdc1	87	73.021	ENSHGLG00000006319	-	93	72.500	Heterocephalus_glaber_female
ENSLOCG00000003045	ythdc1	94	57.580	ENSHGLG00000003239	-	86	58.176	Heterocephalus_glaber_female
ENSLOCG00000003045	ythdc1	94	56.098	ENSHGLG00100008060	-	86	56.651	Heterocephalus_glaber_male
ENSLOCG00000003045	ythdc1	87	72.419	ENSHGLG00100001556	-	93	71.746	Heterocephalus_glaber_male
ENSLOCG00000003045	ythdc1	65	74.468	ENSHCOG00000001520	ythdc1	88	65.130	Hippocampus_comes
ENSLOCG00000003045	ythdc1	92	73.551	ENSIPUG00000018136	ythdc1	92	73.529	Ictalurus_punctatus
ENSLOCG00000003045	ythdc1	90	87.028	ENSSTOG00000013652	YTHDC1	93	73.285	Ictidomys_tridecemlineatus
ENSLOCG00000003045	ythdc1	89	86.321	ENSJJAG00000010268	Ythdc1	93	72.429	Jaculus_jaculus
ENSLOCG00000003045	ythdc1	62	63.409	ENSKMAG00000006483	ythdc1	85	65.909	Kryptolebias_marmoratus
ENSLOCG00000003045	ythdc1	60	79.545	ENSLBEG00000020831	ythdc1	72	79.545	Labrus_bergylta
ENSLOCG00000003045	ythdc1	86	87.828	ENSLACG00000004893	YTHDC1	92	72.441	Latimeria_chalumnae
ENSLOCG00000003045	ythdc1	92	87.736	ENSLAFG00000021592	YTHDC1	100	86.301	Loxodonta_africana
ENSLOCG00000003045	ythdc1	92	87.028	ENSMFAG00000031927	YTHDC1	93	73.431	Macaca_fascicularis
ENSLOCG00000003045	ythdc1	92	88.702	ENSMMUG00000002265	YTHDC1	93	73.560	Macaca_mulatta
ENSLOCG00000003045	ythdc1	92	88.702	ENSMNEG00000033751	YTHDC1	93	73.560	Macaca_nemestrina
ENSLOCG00000003045	ythdc1	92	88.702	ENSMLEG00000042147	YTHDC1	93	73.560	Mandrillus_leucophaeus
ENSLOCG00000003045	ythdc1	62	64.073	ENSMAMG00000013122	ythdc1	92	56.919	Mastacembelus_armatus
ENSLOCG00000003045	ythdc1	87	55.252	ENSMZEG00005023173	ythdc1	93	58.106	Maylandia_zebra
ENSLOCG00000003045	ythdc1	92	72.630	ENSMGAG00000010391	YTHDC1	92	72.783	Meleagris_gallopavo
ENSLOCG00000003045	ythdc1	92	86.792	ENSMAUG00000001286	Ythdc1	93	72.515	Mesocricetus_auratus
ENSLOCG00000003045	ythdc1	87	73.684	ENSMICG00000034640	YTHDC1	93	73.900	Microcebus_murinus
ENSLOCG00000003045	ythdc1	92	86.792	ENSMOCG00000020201	Ythdc1	93	72.687	Microtus_ochrogaster
ENSLOCG00000003045	ythdc1	75	55.046	ENSMMOG00000021200	ythdc1	93	52.695	Mola_mola
ENSLOCG00000003045	ythdc1	70	56.688	ENSMODG00000009173	-	88	58.072	Monodelphis_domestica
ENSLOCG00000003045	ythdc1	92	70.776	ENSMODG00000020754	-	92	72.173	Monodelphis_domestica
ENSLOCG00000003045	ythdc1	91	46.770	ENSMODG00000010076	-	75	58.780	Monodelphis_domestica
ENSLOCG00000003045	ythdc1	96	53.882	ENSMODG00000014337	-	95	62.470	Monodelphis_domestica
ENSLOCG00000003045	ythdc1	51	60.997	ENSMODG00000004117	-	92	60.510	Monodelphis_domestica
ENSLOCG00000003045	ythdc1	81	55.943	ENSMALG00000013412	ythdc1	93	56.804	Monopterus_albus
ENSLOCG00000003045	ythdc1	92	88.221	MGP_CAROLIEiJ_G0027347	Ythdc1	93	72.041	Mus_caroli
ENSLOCG00000003045	ythdc1	92	67.947	ENSMUSG00000035851	Ythdc1	93	72.117	Mus_musculus
ENSLOCG00000003045	ythdc1	92	67.799	MGP_PahariEiJ_G0017126	Ythdc1	93	72.230	Mus_pahari
ENSLOCG00000003045	ythdc1	92	67.799	MGP_SPRETEiJ_G0028339	Ythdc1	93	72.083	Mus_spretus
ENSLOCG00000003045	ythdc1	92	62.592	ENSMPUG00000001743	YTHDC1	68	87.719	Mustela_putorius_furo
ENSLOCG00000003045	ythdc1	90	88.942	ENSMLUG00000016300	YTHDC1	92	72.851	Myotis_lucifugus
ENSLOCG00000003045	ythdc1	57	63.575	ENSNGAG00000024000	Ythdc1	93	62.585	Nannospalax_galili
ENSLOCG00000003045	ythdc1	52	68.994	ENSNBRG00000007663	ythdc1	92	57.216	Neolamprologus_brichardi
ENSLOCG00000003045	ythdc1	91	86.085	ENSNLEG00000009202	YTHDC1	92	72.741	Nomascus_leucogenys
ENSLOCG00000003045	ythdc1	66	75.667	ENSMEUG00000007128	YTHDC1	68	75.667	Notamacropus_eugenii
ENSLOCG00000003045	ythdc1	72	90.099	ENSOPRG00000008986	YTHDC1	67	90.000	Ochotona_princeps
ENSLOCG00000003045	ythdc1	87	72.997	ENSODEG00000001715	YTHDC1	93	72.470	Octodon_degus
ENSLOCG00000003045	ythdc1	99	79.545	ENSONIG00000012651	ythdc1	95	72.000	Oreochromis_niloticus
ENSLOCG00000003045	ythdc1	83	64.264	ENSOANG00000014398	YTHDC1	91	63.014	Ornithorhynchus_anatinus
ENSLOCG00000003045	ythdc1	92	88.161	ENSOCUG00000015886	YTHDC1	84	86.207	Oryctolagus_cuniculus
ENSLOCG00000003045	ythdc1	92	52.847	ENSORLG00000030544	ythdc1	94	57.842	Oryzias_latipes
ENSLOCG00000003045	ythdc1	92	52.263	ENSORLG00020019316	ythdc1	94	57.593	Oryzias_latipes_hni
ENSLOCG00000003045	ythdc1	87	54.624	ENSOMEG00000000551	ythdc1	94	56.196	Oryzias_melastigma
ENSLOCG00000003045	ythdc1	92	89.183	ENSOGAG00000003362	YTHDC1	93	73.225	Otolemur_garnettii
ENSLOCG00000003045	ythdc1	92	87.981	ENSOARG00000008633	YTHDC1	93	72.821	Ovis_aries
ENSLOCG00000003045	ythdc1	92	87.028	ENSPPAG00000041315	YTHDC1	93	73.246	Pan_paniscus
ENSLOCG00000003045	ythdc1	92	87.500	ENSPPRG00000011979	YTHDC1	93	73.324	Panthera_pardus
ENSLOCG00000003045	ythdc1	90	87.028	ENSPTIG00000015527	YTHDC1	93	73.077	Panthera_tigris_altaica
ENSLOCG00000003045	ythdc1	92	87.028	ENSPTRG00000016105	YTHDC1	93	73.246	Pan_troglodytes
ENSLOCG00000003045	ythdc1	92	87.028	ENSPANG00000021590	YTHDC1	93	73.431	Papio_anubis
ENSLOCG00000003045	ythdc1	92	73.105	ENSPKIG00000018497	ythdc1	93	76.583	Paramormyrops_kingsleyae
ENSLOCG00000003045	ythdc1	91	72.671	ENSPSIG00000002782	YTHDC1	92	73.002	Pelodiscus_sinensis
ENSLOCG00000003045	ythdc1	53	65.646	ENSPMGG00000000970	-	86	60.393	Periophthalmus_magnuspinnatus
ENSLOCG00000003045	ythdc1	90	88.462	ENSPEMG00000013850	Ythdc1	92	72.973	Peromyscus_maniculatus_bairdii
ENSLOCG00000003045	ythdc1	92	70.928	ENSPCIG00000006870	YTHDC1	92	72.321	Phascolarctos_cinereus
ENSLOCG00000003045	ythdc1	52	67.385	ENSPFOG00000013404	ythdc1	94	56.916	Poecilia_formosa
ENSLOCG00000003045	ythdc1	52	67.385	ENSPLAG00000011079	ythdc1	85	66.129	Poecilia_latipinna
ENSLOCG00000003045	ythdc1	52	67.385	ENSPMEG00000009238	ythdc1	94	56.916	Poecilia_mexicana
ENSLOCG00000003045	ythdc1	62	61.985	ENSPREG00000016973	ythdc1	93	55.259	Poecilia_reticulata
ENSLOCG00000003045	ythdc1	62	88.702	ENSPPYG00000014726	YTHDC1	91	75.993	Pongo_abelii
ENSLOCG00000003045	ythdc1	75	79.762	ENSPCAG00000009607	YTHDC1	77	76.339	Procavia_capensis
ENSLOCG00000003045	ythdc1	87	69.298	ENSPCOG00000019105	YTHDC1	92	69.355	Propithecus_coquereli
ENSLOCG00000003045	ythdc1	92	85.817	ENSPVAG00000015551	YTHDC1	93	71.912	Pteropus_vampyrus
ENSLOCG00000003045	ythdc1	87	55.252	ENSPNYG00000011687	ythdc1	94	58.106	Pundamilia_nyererei
ENSLOCG00000003045	ythdc1	92	75.111	ENSPNAG00000028365	ythdc1	93	78.038	Pygocentrus_nattereri
ENSLOCG00000003045	ythdc1	92	86.557	ENSRNOG00000001996	Ythdc1	93	72.926	Rattus_norvegicus
ENSLOCG00000003045	ythdc1	91	86.792	ENSRBIG00000028279	YTHDC1	92	72.485	Rhinopithecus_bieti
ENSLOCG00000003045	ythdc1	92	88.702	ENSRROG00000035028	YTHDC1	93	73.560	Rhinopithecus_roxellana
ENSLOCG00000003045	ythdc1	92	87.028	ENSSBOG00000022353	YTHDC1	93	73.431	Saimiri_boliviensis_boliviensis
ENSLOCG00000003045	ythdc1	92	70.015	ENSSHAG00000002538	YTHDC1	92	71.429	Sarcophilus_harrisii
ENSLOCG00000003045	ythdc1	92	76.054	ENSSFOG00015003298	ythdc1	93	76.289	Scleropages_formosus
ENSLOCG00000003045	ythdc1	62	62.921	ENSSMAG00000009086	ythdc1	94	55.777	Scophthalmus_maximus
ENSLOCG00000003045	ythdc1	52	69.755	ENSSDUG00000022008	ythdc1	94	58.298	Seriola_dumerili
ENSLOCG00000003045	ythdc1	52	69.755	ENSSLDG00000007926	ythdc1	94	58.156	Seriola_lalandi_dorsalis
ENSLOCG00000003045	ythdc1	62	88.462	ENSSARG00000010960	YTHDC1	89	81.202	Sorex_araneus
ENSLOCG00000003045	ythdc1	92	71.277	ENSSPUG00000009357	YTHDC1	94	70.904	Sphenodon_punctatus
ENSLOCG00000003045	ythdc1	87	55.714	ENSSPAG00000011449	ythdc1	94	57.386	Stegastes_partitus
ENSLOCG00000003045	ythdc1	92	87.264	ENSSSCG00000035505	YTHDC1	93	73.149	Sus_scrofa
ENSLOCG00000003045	ythdc1	92	73.242	ENSTGUG00000004452	-	92	73.403	Taeniopygia_guttata
ENSLOCG00000003045	ythdc1	69	68.750	ENSTRUG00000010142	ythdc1	70	79.487	Takifugu_rubripes
ENSLOCG00000003045	ythdc1	92	55.660	ENSTNIG00000013243	ythdc1	89	66.204	Tetraodon_nigroviridis
ENSLOCG00000003045	ythdc1	92	65.919	ENSTBEG00000011546	YTHDC1	92	69.345	Tupaia_belangeri
ENSLOCG00000003045	ythdc1	92	88.221	ENSTTRG00000005083	YTHDC1	93	72.459	Tursiops_truncatus
ENSLOCG00000003045	ythdc1	84	89.183	ENSUAMG00000010388	YTHDC1	92	72.684	Ursus_americanus
ENSLOCG00000003045	ythdc1	91	65.000	ENSUMAG00000013668	YTHDC1	90	66.063	Ursus_maritimus
ENSLOCG00000003045	ythdc1	87	70.920	ENSVPAG00000009040	YTHDC1	92	70.920	Vicugna_pacos
ENSLOCG00000003045	ythdc1	91	87.500	ENSVVUG00000005387	YTHDC1	92	72.249	Vulpes_vulpes
ENSLOCG00000003045	ythdc1	91	72.178	ENSXETG00000017960	ythdc1	91	72.857	Xenopus_tropicalis
ENSLOCG00000003045	ythdc1	52	65.969	ENSXMAG00000005196	ythdc1	94	55.764	Xiphophorus_maculatus