EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000003368 (Gene tree)
Gene ID: 102696735
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 14492 bases
Position: chrLG24:37047-51538
Accession: 102696735
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000003984	RRM_1	PF00076.22	2.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000003992	-	2094	XM_006641524	ENSLOCP00000003984	415 (aa)	XP_006641587	W5M6H6

Gene Model

Click here to download ENSLOCG00000003368's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003368's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003368	rbm42	100	68.720	ENSAPOG00000015109	rbm42	100	68.322	Acanthochromis_polyacanthus
ENSLOCG00000003368	rbm42	100	65.321	ENSACIG00000010771	rbm42	100	63.830	Amphilophus_citrinellus
ENSLOCG00000003368	rbm42	100	68.720	ENSAOCG00000008873	rbm42	100	68.558	Amphiprion_ocellaris
ENSLOCG00000003368	rbm42	100	68.720	ENSAPEG00000012051	rbm42	99	68.558	Amphiprion_percula
ENSLOCG00000003368	rbm42	100	67.933	ENSATEG00000000536	rbm42	100	67.221	Anabas_testudineus
ENSLOCG00000003368	rbm42	100	68.720	ENSACLG00000004988	rbm42	100	67.773	Astatotilapia_calliptera
ENSLOCG00000003368	rbm42	100	76.485	ENSAMXG00000016545	rbm42	100	76.485	Astyanax_mexicanus
ENSLOCG00000003368	rbm42	59	43.426	WBGene00021901	tag-262	71	42.231	Caenorhabditis_elegans
ENSLOCG00000003368	rbm42	97	63.658	ENSCSEG00000010248	rbm42	100	63.420	Cynoglossus_semilaevis
ENSLOCG00000003368	rbm42	100	65.640	ENSCVAG00000015589	rbm42	100	65.647	Cyprinodon_variegatus
ENSLOCG00000003368	rbm42	100	69.860	ENSDARG00000039910	rbm42	100	71.599	Danio_rerio
ENSLOCG00000003368	rbm42	100	71.824	ENSELUG00000022403	rbm42	100	69.977	Esox_lucius
ENSLOCG00000003368	rbm42	52	76.126	ENSFHEG00000006764	rbm42	87	68.797	Fundulus_heteroclitus
ENSLOCG00000003368	rbm42	100	63.744	ENSGMOG00000012660	rbm42	100	63.357	Gadus_morhua
ENSLOCG00000003368	rbm42	74	66.877	ENSGAFG00000009059	rbm42	100	67.937	Gambusia_affinis
ENSLOCG00000003368	rbm42	100	64.569	ENSGACG00000004170	rbm42	100	64.019	Gasterosteus_aculeatus
ENSLOCG00000003368	rbm42	100	68.720	ENSHBUG00000011141	rbm42	100	67.773	Haplochromis_burtoni
ENSLOCG00000003368	rbm42	100	65.882	ENSHCOG00000021214	rbm42	100	65.647	Hippocampus_comes
ENSLOCG00000003368	rbm42	100	77.143	ENSIPUG00000022365	rbm42	99	76.190	Ictalurus_punctatus
ENSLOCG00000003368	rbm42	91	62.435	ENSKMAG00000015287	rbm42	99	61.917	Kryptolebias_marmoratus
ENSLOCG00000003368	rbm42	100	66.033	ENSLBEG00000017547	rbm42	100	66.983	Labrus_bergylta
ENSLOCG00000003368	rbm42	83	66.952	ENSLBEG00000004578	-	96	68.946	Labrus_bergylta
ENSLOCG00000003368	rbm42	100	67.453	ENSMAMG00000006708	rbm42	100	67.773	Mastacembelus_armatus
ENSLOCG00000003368	rbm42	100	68.720	ENSMZEG00005025234	rbm42	100	67.773	Maylandia_zebra
ENSLOCG00000003368	rbm42	100	59.059	ENSMALG00000015720	rbm42	94	68.732	Monopterus_albus
ENSLOCG00000003368	rbm42	100	68.706	ENSONIG00000008029	rbm42	100	67.213	Oreochromis_niloticus
ENSLOCG00000003368	rbm42	100	54.157	ENSORLG00020022507	rbm42	100	53.864	Oryzias_latipes_hni
ENSLOCG00000003368	rbm42	100	65.714	ENSORLG00015000659	rbm42	100	63.723	Oryzias_latipes_hsok
ENSLOCG00000003368	rbm42	52	78.636	ENSOMEG00000014332	rbm42	90	74.790	Oryzias_melastigma
ENSLOCG00000003368	rbm42	100	80.952	ENSPKIG00000015165	rbm42	100	79.286	Paramormyrops_kingsleyae
ENSLOCG00000003368	rbm42	74	77.419	ENSPMGG00000003569	rbm42	100	95.714	Periophthalmus_magnuspinnatus
ENSLOCG00000003368	rbm42	52	55.603	ENSPMAG00000008633	rbm42	99	51.366	Petromyzon_marinus
ENSLOCG00000003368	rbm42	100	64.000	ENSPFOG00000007701	rbm42	100	66.981	Poecilia_formosa
ENSLOCG00000003368	rbm42	100	64.000	ENSPLAG00000009405	rbm42	100	66.981	Poecilia_latipinna
ENSLOCG00000003368	rbm42	100	62.963	ENSPMEG00000010375	rbm42	100	66.745	Poecilia_mexicana
ENSLOCG00000003368	rbm42	100	64.235	ENSPREG00000018102	rbm42	100	67.217	Poecilia_reticulata
ENSLOCG00000003368	rbm42	100	67.773	ENSPNYG00000014460	rbm42	100	67.536	Pundamilia_nyererei
ENSLOCG00000003368	rbm42	100	77.197	ENSPNAG00000009961	rbm42	100	76.247	Pygocentrus_nattereri
ENSLOCG00000003368	rbm42	100	76.722	ENSSFOG00015019227	rbm42	100	76.960	Scleropages_formosus
ENSLOCG00000003368	rbm42	100	65.640	ENSSMAG00000011935	rbm42	100	65.957	Scophthalmus_maximus
ENSLOCG00000003368	rbm42	100	69.031	ENSSDUG00000004033	rbm42	100	68.085	Seriola_dumerili
ENSLOCG00000003368	rbm42	100	61.611	ENSSLDG00000009918	rbm42	100	95.775	Seriola_lalandi_dorsalis
ENSLOCG00000003368	rbm42	100	68.009	ENSSPAG00000019871	rbm42	100	67.612	Stegastes_partitus
ENSLOCG00000003368	rbm42	100	65.000	ENSTRUG00000024586	-	76	63.333	Takifugu_rubripes
ENSLOCG00000003368	rbm42	99	55.629	ENSTNIG00000011669	rbm42	100	57.582	Tetraodon_nigroviridis
ENSLOCG00000003368	rbm42	100	58.166	ENSXETG00000017599	rbm42	100	56.167	Xenopus_tropicalis
ENSLOCG00000003368	rbm42	100	64.471	ENSXMAG00000012827	rbm42	100	66.981	Xiphophorus_maculatus