EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000003453 (Gene tree)
Gene ID: 102695725
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 3502 bases
Position: chrLG6:5647950-5651451
Accession: 102695725
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004092	MMR_HSR1	PF01926.23	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004100	-	1034	XM_006631385	ENSLOCP00000004092	212 (aa)	XP_006631448	W5M6T4

Gene Model

Click here to download ENSLOCG00000003453's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003453's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000003453	rab42a	75	42.331	ENSLOCG00000015358	rab33a	67	42.331
ENSLOCG00000003453	rab42a	78	41.212	ENSLOCG00000007491	rab18a	80	41.212
ENSLOCG00000003453	rab42a	97	36.585	ENSLOCG00000015191	rab41	93	36.585
ENSLOCG00000003453	rab42a	74	33.758	ENSLOCG00000016767	rabl2	67	33.758
ENSLOCG00000003453	rab42a	77	39.521	ENSLOCG00000017414	rab9a	82	39.521
ENSLOCG00000003453	rab42a	84	41.899	ENSLOCG00000002680	rab12	82	39.130
ENSLOCG00000003453	rab42a	71	35.099	ENSLOCG00000000684	hrasb	85	34.146
ENSLOCG00000003453	rab42a	76	36.145	ENSLOCG00000014547	RAB7A	79	36.145
ENSLOCG00000003453	rab42a	83	35.429	ENSLOCG00000007682	rhebl1	92	35.429
ENSLOCG00000003453	rab42a	71	35.099	ENSLOCG00000015334	kras	86	34.146
ENSLOCG00000003453	rab42a	74	43.312	ENSLOCG00000008881	rab25a	90	43.312
ENSLOCG00000003453	rab42a	96	37.500	ENSLOCG00000005904	zgc:101559	84	37.500
ENSLOCG00000003453	rab42a	69	36.735	ENSLOCG00000016999	rab23	65	35.849
ENSLOCG00000003453	rab42a	71	38.158	ENSLOCG00000001886	mras	77	37.805
ENSLOCG00000003453	rab42a	95	35.922	ENSLOCG00000017482	rab9b	96	35.922
ENSLOCG00000003453	rab42a	100	51.643	ENSLOCG00000015825	-	99	51.643
ENSLOCG00000003453	rab42a	100	59.155	ENSLOCG00000006748	-	100	59.155
ENSLOCG00000003453	rab42a	82	32.955	ENSLOCG00000010440	nras	85	33.537
ENSLOCG00000003453	rab42a	100	66.047	ENSLOCG00000003467	si:dkey-34d22.5	100	66.047
ENSLOCG00000003453	rab42a	77	35.976	ENSLOCG00000012566	rab5c	76	35.976
ENSLOCG00000003453	rab42a	77	41.317	ENSLOCG00000010535	rab33ba	72	41.317
ENSLOCG00000003453	rab42a	98	39.252	ENSLOCG00000005509	rab14	97	39.252
ENSLOCG00000003453	rab42a	95	40.299	ENSLOCG00000012406	rab15	90	40.299
ENSLOCG00000003453	rab42a	77	34.756	ENSLOCG00000007029	rab22a	84	34.756
ENSLOCG00000003453	rab42a	95	30.435	ENSLOCG00000005802	rab34a	77	30.435
ENSLOCG00000003453	rab42a	89	46.809	ENSLOCG00000005108	rab2a	89	46.316
ENSLOCG00000003453	rab42a	79	43.713	ENSLOCG00000005884	rab30	81	43.713
ENSLOCG00000003453	rab42a	77	38.922	ENSLOCG00000018352	rab9b	81	38.922
ENSLOCG00000003453	rab42a	97	31.250	ENSLOCG00000014749	si:dkey-13a21.4	97	31.250
ENSLOCG00000003453	rab42a	97	32.195	ENSLOCG00000006591	rab5ab	89	32.195
ENSLOCG00000003453	rab42a	73	36.538	ENSLOCG00000002825	rab36	67	36.538
ENSLOCG00000003453	rab42a	100	58.685	ENSLOCG00000014927	rab39bb	98	58.685
ENSLOCG00000003453	rab42a	88	30.159	ENSLOCG00000016464	si:cabz01085950.1	93	30.159
ENSLOCG00000003453	rab42a	75	31.677	ENSLOCG00000017737	-	79	31.677
ENSLOCG00000003453	rab42a	97	38.605	ENSLOCG00000014692	zgc:171927	96	38.605
ENSLOCG00000003453	rab42a	77	43.902	ENSLOCG00000001637	rab35b	79	43.902
ENSLOCG00000003453	rab42a	87	35.450	ENSLOCG00000015576	zgc:100918	90	35.450
ENSLOCG00000003453	rab42a	79	34.132	ENSLOCG00000010004	rheb	88	34.132
ENSLOCG00000003453	rab42a	98	39.423	ENSLOCG00000008865	rab11al	96	39.423
ENSLOCG00000003453	rab42a	98	39.713	ENSLOCG00000013835	rab11a	95	39.713
ENSLOCG00000003453	rab42a	85	43.094	ENSLOCG00000016037	rab1ab	87	43.094

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003453	rab42a	94	88.000	ENSAPOG00000009188	rab42a	100	83.486	Acanthochromis_polyacanthus
ENSLOCG00000003453	rab42a	95	88.060	ENSACIG00000003102	rab42a	100	83.486	Amphilophus_citrinellus
ENSLOCG00000003453	rab42a	94	87.500	ENSAOCG00000012921	rab42a	83	83.028	Amphiprion_ocellaris
ENSLOCG00000003453	rab42a	94	87.500	ENSAPEG00000007713	rab42a	83	83.028	Amphiprion_percula
ENSLOCG00000003453	rab42a	100	83.028	ENSATEG00000009052	rab42a	100	83.028	Anabas_testudineus
ENSLOCG00000003453	rab42a	100	83.410	ENSACLG00000007514	rab42a	100	83.410	Astatotilapia_calliptera
ENSLOCG00000003453	rab42a	100	87.793	ENSAMXG00000032729	rab42a	100	87.793	Astyanax_mexicanus
ENSLOCG00000003453	rab42a	100	82.110	ENSCSEG00000010582	rab42a	100	82.110	Cynoglossus_semilaevis
ENSLOCG00000003453	rab42a	92	51.777	ENSDARG00000102580	CU571310.1	93	51.777	Danio_rerio
ENSLOCG00000003453	rab42a	100	85.915	ENSDARG00000034215	rab42a	100	85.915	Danio_rerio
ENSLOCG00000003453	rab42a	100	82.870	ENSELUG00000010345	rab42a	100	82.870	Esox_lucius
ENSLOCG00000003453	rab42a	100	81.651	ENSFHEG00000013106	rab42a	100	81.651	Fundulus_heteroclitus
ENSLOCG00000003453	rab42a	100	80.734	ENSGAFG00000002141	rab42a	100	80.734	Gambusia_affinis
ENSLOCG00000003453	rab42a	100	83.410	ENSHBUG00000015126	rab42a	82	83.410	Haplochromis_burtoni
ENSLOCG00000003453	rab42a	100	85.915	ENSIPUG00000011376	rab42a	100	85.915	Ictalurus_punctatus
ENSLOCG00000003453	rab42a	100	82.192	ENSKMAG00000007267	rab42a	100	83.028	Kryptolebias_marmoratus
ENSLOCG00000003453	rab42a	94	87.000	ENSLBEG00000001193	rab42a	100	82.488	Labrus_bergylta
ENSLOCG00000003453	rab42a	100	67.925	ENSLACG00000012755	-	100	67.925	Latimeria_chalumnae
ENSLOCG00000003453	rab42a	94	88.000	ENSMAMG00000002296	rab42a	100	83.486	Mastacembelus_armatus
ENSLOCG00000003453	rab42a	100	83.410	ENSMZEG00005012460	rab42a	82	83.410	Maylandia_zebra
ENSLOCG00000003453	rab42a	100	82.110	ENSMMOG00000014358	rab42a	100	82.110	Mola_mola
ENSLOCG00000003453	rab42a	100	83.028	ENSNBRG00000021487	rab42a	82	83.028	Neolamprologus_brichardi
ENSLOCG00000003453	rab42a	100	82.110	ENSORLG00000022335	rab42a	100	82.110	Oryzias_latipes
ENSLOCG00000003453	rab42a	100	82.110	ENSORLG00020013895	rab42a	100	82.110	Oryzias_latipes_hni
ENSLOCG00000003453	rab42a	100	82.110	ENSORLG00015004273	rab42a	100	82.110	Oryzias_latipes_hsok
ENSLOCG00000003453	rab42a	100	82.110	ENSOMEG00000020418	rab42a	100	82.110	Oryzias_melastigma
ENSLOCG00000003453	rab42a	99	46.919	ENSPKIG00000015234	-	99	46.919	Paramormyrops_kingsleyae
ENSLOCG00000003453	rab42a	100	79.343	ENSPKIG00000021215	-	100	79.343	Paramormyrops_kingsleyae
ENSLOCG00000003453	rab42a	93	88.325	ENSPMGG00000024112	rab42a	90	88.325	Periophthalmus_magnuspinnatus
ENSLOCG00000003453	rab42a	100	80.734	ENSPFOG00000004838	rab42a	82	80.734	Poecilia_formosa
ENSLOCG00000003453	rab42a	100	80.734	ENSPLAG00000005628	rab42a	100	80.734	Poecilia_latipinna
ENSLOCG00000003453	rab42a	100	80.734	ENSPMEG00000019497	rab42a	100	80.734	Poecilia_mexicana
ENSLOCG00000003453	rab42a	100	80.734	ENSPREG00000013962	rab42a	100	80.734	Poecilia_reticulata
ENSLOCG00000003453	rab42a	100	83.410	ENSPNYG00000010325	rab42a	82	83.410	Pundamilia_nyererei
ENSLOCG00000003453	rab42a	100	87.324	ENSPNAG00000016567	rab42a	100	87.324	Pygocentrus_nattereri
ENSLOCG00000003453	rab42a	100	47.418	ENSSFOG00015016000	-	97	47.418	Scleropages_formosus
ENSLOCG00000003453	rab42a	100	84.507	ENSSFOG00015020732	rab42a	100	84.507	Scleropages_formosus
ENSLOCG00000003453	rab42a	100	81.651	ENSSMAG00000020311	rab42a	100	81.651	Scophthalmus_maximus
ENSLOCG00000003453	rab42a	100	83.486	ENSSDUG00000011851	rab42a	100	83.486	Seriola_dumerili
ENSLOCG00000003453	rab42a	100	83.486	ENSSLDG00000020354	rab42a	100	83.486	Seriola_lalandi_dorsalis
ENSLOCG00000003453	rab42a	94	88.000	ENSSPAG00000016167	rab42a	100	83.486	Stegastes_partitus
ENSLOCG00000003453	rab42a	100	83.945	ENSTRUG00000010224	rab42a	100	83.945	Takifugu_rubripes
ENSLOCG00000003453	rab42a	100	81.193	ENSXCOG00000003428	rab42a	100	81.193	Xiphophorus_couchianus
ENSLOCG00000003453	rab42a	100	81.193	ENSXMAG00000028376	rab42a	100	81.193	Xiphophorus_maculatus