EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000003456 (Gene tree)
Gene ID: 102697968
Gene Symbol: rbm38
Alias: fi25e12|rnpc1|wu:fi25e12|zgc:92336
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 13228 bases
Position: chrLG18:7224844-7238071
Accession: 102697968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004094	RRM_1	PF00076.22	2.4e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004102	-	1889	XM_006639503	ENSLOCP00000004094	229 (aa)	XP_006639566	W5M6T6

Gene Model

Click here to download ENSLOCG00000003456's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003456's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000003456	rbm38	97	60.081	ENSLOCG00000006244	rbm24a	100	67.949
ENSLOCG00000003456	rbm38	66	34.667	ENSLOCG00000010743	hnrnpd	67	34.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003456	rbm38	95	71.111	ENSG00000132819	RBM38	94	88.889	Homo_sapiens
ENSLOCG00000003456	rbm38	100	76.170	ENSAPOG00000009939	-	100	76.170	Acanthochromis_polyacanthus
ENSLOCG00000003456	rbm38	100	64.516	ENSAPOG00000003301	rbm38	98	64.516	Acanthochromis_polyacanthus
ENSLOCG00000003456	rbm38	100	77.872	ENSACIG00000012502	-	100	89.744	Amphilophus_citrinellus
ENSLOCG00000003456	rbm38	100	64.516	ENSACIG00000000010	rbm38	98	64.516	Amphilophus_citrinellus
ENSLOCG00000003456	rbm38	100	64.516	ENSAOCG00000013497	-	98	64.516	Amphiprion_ocellaris
ENSLOCG00000003456	rbm38	97	73.729	ENSAOCG00000012559	RBM38	99	75.424	Amphiprion_ocellaris
ENSLOCG00000003456	rbm38	100	73.361	ENSAPEG00000023581	-	100	75.000	Amphiprion_percula
ENSLOCG00000003456	rbm38	100	64.516	ENSAPEG00000013137	rbm38	98	64.516	Amphiprion_percula
ENSLOCG00000003456	rbm38	99	64.435	ENSATEG00000016366	rbm38	99	64.435	Anabas_testudineus
ENSLOCG00000003456	rbm38	100	74.590	ENSATEG00000016710	-	100	75.000	Anabas_testudineus
ENSLOCG00000003456	rbm38	95	70.222	ENSACAG00000016238	RBM38	95	68.220	Anolis_carolinensis
ENSLOCG00000003456	rbm38	94	71.875	ENSANAG00000031959	RBM38	82	91.000	Aotus_nancymaae
ENSLOCG00000003456	rbm38	100	74.590	ENSACLG00000019514	-	100	74.590	Astatotilapia_calliptera
ENSLOCG00000003456	rbm38	100	77.447	ENSAMXG00000015601	-	100	77.731	Astyanax_mexicanus
ENSLOCG00000003456	rbm38	99	65.236	ENSAMXG00000038120	rbm38	99	65.236	Astyanax_mexicanus
ENSLOCG00000003456	rbm38	95	70.667	ENSBTAG00000008105	RBM38	91	70.667	Bos_taurus
ENSLOCG00000003456	rbm38	57	66.154	WBGene00006321	sup-12	59	83.146	Caenorhabditis_elegans
ENSLOCG00000003456	rbm38	95	71.556	ENSCJAG00000019139	RBM38	82	91.000	Callithrix_jacchus
ENSLOCG00000003456	rbm38	95	72.444	ENSCAFG00020021943	RBM38	91	72.444	Canis_lupus_dingo
ENSLOCG00000003456	rbm38	95	70.667	ENSCHIG00000002609	RBM38	91	70.667	Capra_hircus
ENSLOCG00000003456	rbm38	95	71.556	ENSCPOG00000012781	RBM38	91	71.556	Cavia_porcellus
ENSLOCG00000003456	rbm38	95	71.556	ENSCCAG00000036872	RBM38	82	91.000	Cebus_capucinus
ENSLOCG00000003456	rbm38	95	72.000	ENSCATG00000032133	RBM38	82	91.000	Cercocebus_atys
ENSLOCG00000003456	rbm38	95	71.111	ENSCLAG00000005906	RBM38	94	71.111	Chinchilla_lanigera
ENSLOCG00000003456	rbm38	95	72.000	ENSCSAG00000015503	RBM38	91	72.000	Chlorocebus_sabaeus
ENSLOCG00000003456	rbm38	94	73.991	ENSCPBG00000024059	RBM38	100	73.991	Chrysemys_picta_bellii
ENSLOCG00000003456	rbm38	63	66.013	ENSCING00000025102	-	89	56.311	Ciona_intestinalis
ENSLOCG00000003456	rbm38	65	63.636	ENSCSAVG00000001132	-	77	55.610	Ciona_savignyi
ENSLOCG00000003456	rbm38	92	55.556	ENSCANG00000030105	-	79	55.204	Colobus_angolensis_palliatus
ENSLOCG00000003456	rbm38	95	69.912	ENSCGRG00001012928	Rbm38	92	69.912	Cricetulus_griseus_chok1gshd
ENSLOCG00000003456	rbm38	100	73.361	ENSCSEG00000004701	-	100	73.361	Cynoglossus_semilaevis
ENSLOCG00000003456	rbm38	93	58.824	ENSCSEG00000020943	rbm38	70	58.371	Cynoglossus_semilaevis
ENSLOCG00000003456	rbm38	100	74.590	ENSCVAG00000005472	-	100	75.820	Cyprinodon_variegatus
ENSLOCG00000003456	rbm38	99	59.756	ENSCVAG00000015952	rbm38	98	60.081	Cyprinodon_variegatus
ENSLOCG00000003456	rbm38	99	74.786	ENSDARG00000058818	rbm38	100	74.786	Danio_rerio
ENSLOCG00000003456	rbm38	94	72.973	ENSDNOG00000032004	RBM38	100	72.973	Dasypus_novemcinctus
ENSLOCG00000003456	rbm38	95	71.111	ENSECAG00000007700	RBM38	91	71.111	Equus_caballus
ENSLOCG00000003456	rbm38	95	68.142	ENSEEUG00000013489	RBM38	91	69.469	Erinaceus_europaeus
ENSLOCG00000003456	rbm38	91	66.372	ENSELUG00000000585	-	99	66.372	Esox_lucius
ENSLOCG00000003456	rbm38	100	80.165	ENSELUG00000005849	-	100	80.165	Esox_lucius
ENSLOCG00000003456	rbm38	95	72.889	ENSFCAG00000042916	RBM38	82	90.000	Felis_catus
ENSLOCG00000003456	rbm38	74	80.925	ENSFALG00000010805	RBM38	90	80.925	Ficedula_albicollis
ENSLOCG00000003456	rbm38	100	61.446	ENSFHEG00000017748	rbm38	98	61.446	Fundulus_heteroclitus
ENSLOCG00000003456	rbm38	100	74.043	ENSFHEG00000006160	-	100	74.043	Fundulus_heteroclitus
ENSLOCG00000003456	rbm38	78	80.000	ENSGMOG00000016655	-	99	83.243	Gadus_morhua
ENSLOCG00000003456	rbm38	94	73.991	ENSGALG00000026081	RBM38	100	73.991	Gallus_gallus
ENSLOCG00000003456	rbm38	94	74.661	ENSGACG00000009873	-	100	74.661	Gasterosteus_aculeatus
ENSLOCG00000003456	rbm38	94	68.182	ENSGACG00000015224	rbm38	100	68.182	Gasterosteus_aculeatus
ENSLOCG00000003456	rbm38	94	74.439	ENSGAGG00000001187	RBM38	100	74.439	Gopherus_agassizii
ENSLOCG00000003456	rbm38	100	77.021	ENSHBUG00000011778	-	100	77.021	Haplochromis_burtoni
ENSLOCG00000003456	rbm38	100	65.323	ENSHBUG00000012058	rbm38	98	65.323	Haplochromis_burtoni
ENSLOCG00000003456	rbm38	95	68.750	ENSHGLG00000015077	RBM38	91	70.982	Heterocephalus_glaber_female
ENSLOCG00000003456	rbm38	87	79.710	ENSHCOG00000005622	-	60	81.159	Hippocampus_comes
ENSLOCG00000003456	rbm38	98	51.282	ENSHCOG00000019040	rbm38	96	51.282	Hippocampus_comes
ENSLOCG00000003456	rbm38	100	73.418	ENSIPUG00000019349	-	100	73.418	Ictalurus_punctatus
ENSLOCG00000003456	rbm38	92	58.009	ENSKMAG00000012402	rbm38	98	58.009	Kryptolebias_marmoratus
ENSLOCG00000003456	rbm38	100	64.113	ENSLBEG00000018878	rbm38	98	64.113	Labrus_bergylta
ENSLOCG00000003456	rbm38	100	77.872	ENSLBEG00000016163	RBM38	100	78.723	Labrus_bergylta
ENSLOCG00000003456	rbm38	95	72.000	ENSMFAG00000043808	RBM38	82	91.000	Macaca_fascicularis
ENSLOCG00000003456	rbm38	95	72.000	ENSMMUG00000031391	RBM38	82	91.000	Macaca_mulatta
ENSLOCG00000003456	rbm38	95	72.000	ENSMNEG00000034683	RBM38	82	91.000	Macaca_nemestrina
ENSLOCG00000003456	rbm38	100	74.897	ENSMAMG00000020499	RBM38	100	75.309	Mastacembelus_armatus
ENSLOCG00000003456	rbm38	100	64.919	ENSMAMG00000024135	rbm38	98	64.919	Mastacembelus_armatus
ENSLOCG00000003456	rbm38	100	77.021	ENSMZEG00005000849	-	100	77.021	Maylandia_zebra
ENSLOCG00000003456	rbm38	100	65.323	ENSMZEG00005026036	rbm38	98	65.323	Maylandia_zebra
ENSLOCG00000003456	rbm38	95	71.239	ENSMAUG00000021211	Rbm38	92	71.239	Mesocricetus_auratus
ENSLOCG00000003456	rbm38	94	71.429	ENSMICG00000038011	RBM38	100	71.429	Microcebus_murinus
ENSLOCG00000003456	rbm38	95	70.796	ENSMOCG00000008715	Rbm38	92	70.796	Microtus_ochrogaster
ENSLOCG00000003456	rbm38	100	75.820	ENSMMOG00000020051	-	100	76.639	Mola_mola
ENSLOCG00000003456	rbm38	94	71.749	ENSMODG00000016458	RBM38	92	72.197	Monodelphis_domestica
ENSLOCG00000003456	rbm38	80	85.185	ENSMALG00000004680	RBM38	91	71.130	Monopterus_albus
ENSLOCG00000003456	rbm38	100	59.746	ENSMALG00000022327	rbm38	98	60.169	Monopterus_albus
ENSLOCG00000003456	rbm38	95	69.027	MGP_CAROLIEiJ_G0024745	Rbm38	92	71.239	Mus_caroli
ENSLOCG00000003456	rbm38	95	69.027	ENSMUSG00000027510	Rbm38	92	71.239	Mus_musculus
ENSLOCG00000003456	rbm38	95	69.027	MGP_PahariEiJ_G0026186	Rbm38	92	71.239	Mus_pahari
ENSLOCG00000003456	rbm38	95	69.027	MGP_SPRETEiJ_G0025665	Rbm38	92	71.239	Mus_spretus
ENSLOCG00000003456	rbm38	78	77.419	ENSMPUG00000006518	RBM38	97	74.372	Mustela_putorius_furo
ENSLOCG00000003456	rbm38	92	70.776	ENSMLUG00000011140	RBM38	98	70.776	Myotis_lucifugus
ENSLOCG00000003456	rbm38	100	75.000	ENSNBRG00000022545	-	100	75.000	Neolamprologus_brichardi
ENSLOCG00000003456	rbm38	97	68.996	ENSNBRG00000022685	rbm38	98	65.726	Neolamprologus_brichardi
ENSLOCG00000003456	rbm38	51	80.172	ENSMEUG00000005475	-	86	80.172	Notamacropus_eugenii
ENSLOCG00000003456	rbm38	95	71.111	ENSODEG00000007980	RBM38	91	71.111	Octodon_degus
ENSLOCG00000003456	rbm38	99	65.587	ENSONIG00000017073	rbm38	100	65.587	Oreochromis_niloticus
ENSLOCG00000003456	rbm38	99	74.897	ENSONIG00000020324	-	100	74.897	Oreochromis_niloticus
ENSLOCG00000003456	rbm38	97	70.796	ENSOANG00000009259	RBM38	84	70.796	Ornithorhynchus_anatinus
ENSLOCG00000003456	rbm38	100	57.371	ENSORLG00000012154	rbm38	98	58.233	Oryzias_latipes
ENSLOCG00000003456	rbm38	100	72.358	ENSORLG00000027180	-	100	73.984	Oryzias_latipes
ENSLOCG00000003456	rbm38	100	58.233	ENSORLG00020017871	rbm38	98	58.233	Oryzias_latipes_hni
ENSLOCG00000003456	rbm38	100	72.358	ENSORLG00020020751	-	100	73.984	Oryzias_latipes_hni
ENSLOCG00000003456	rbm38	100	59.438	ENSORLG00015012606	rbm38	98	59.438	Oryzias_latipes_hsok
ENSLOCG00000003456	rbm38	100	71.837	ENSORLG00015017040	-	100	74.286	Oryzias_latipes_hsok
ENSLOCG00000003456	rbm38	100	72.131	ENSOMEG00000023912	-	100	74.180	Oryzias_melastigma
ENSLOCG00000003456	rbm38	100	58.635	ENSOMEG00000006805	rbm38	98	58.635	Oryzias_melastigma
ENSLOCG00000003456	rbm38	95	71.556	ENSOGAG00000029136	RBM38	90	71.556	Otolemur_garnettii
ENSLOCG00000003456	rbm38	95	72.889	ENSPPRG00000009507	RBM38	82	90.000	Panthera_pardus
ENSLOCG00000003456	rbm38	55	87.200	ENSPTRG00000045845	-	68	87.200	Pan_troglodytes
ENSLOCG00000003456	rbm38	84	74.129	ENSPTRG00000013661	RBM38	82	91.000	Pan_troglodytes
ENSLOCG00000003456	rbm38	92	58.447	ENSPANG00000033127	-	92	57.207	Papio_anubis
ENSLOCG00000003456	rbm38	95	72.000	ENSPANG00000020919	-	82	91.000	Papio_anubis
ENSLOCG00000003456	rbm38	100	77.406	ENSPKIG00000025417	rbm38	100	78.243	Paramormyrops_kingsleyae
ENSLOCG00000003456	rbm38	100	78.205	ENSPKIG00000018122	-	100	88.034	Paramormyrops_kingsleyae
ENSLOCG00000003456	rbm38	95	72.889	ENSPSIG00000011649	RBM38	93	72.889	Pelodiscus_sinensis
ENSLOCG00000003456	rbm38	99	61.382	ENSPMGG00000011343	rbm38	98	61.789	Periophthalmus_magnuspinnatus
ENSLOCG00000003456	rbm38	100	66.802	ENSPMGG00000017094	-	100	67.611	Periophthalmus_magnuspinnatus
ENSLOCG00000003456	rbm38	94	71.749	ENSPCIG00000013648	RBM38	92	71.749	Phascolarctos_cinereus
ENSLOCG00000003456	rbm38	100	56.746	ENSPFOG00000011658	rbm38	98	60.714	Poecilia_formosa
ENSLOCG00000003456	rbm38	100	73.171	ENSPLAG00000002500	-	100	74.390	Poecilia_latipinna
ENSLOCG00000003456	rbm38	100	56.349	ENSPLAG00000005218	rbm38	98	60.317	Poecilia_latipinna
ENSLOCG00000003456	rbm38	100	56.746	ENSPMEG00000015770	rbm38	98	59.524	Poecilia_mexicana
ENSLOCG00000003456	rbm38	100	57.143	ENSPREG00000007398	rbm38	98	61.111	Poecilia_reticulata
ENSLOCG00000003456	rbm38	95	71.556	ENSPCOG00000026201	RBM38	81	91.000	Propithecus_coquereli
ENSLOCG00000003456	rbm38	96	46.053	ENSPVAG00000006457	RBM38	92	46.725	Pteropus_vampyrus
ENSLOCG00000003456	rbm38	100	74.590	ENSPNYG00000019727	-	100	90.598	Pundamilia_nyererei
ENSLOCG00000003456	rbm38	100	64.919	ENSPNYG00000021373	rbm38	98	64.919	Pundamilia_nyererei
ENSLOCG00000003456	rbm38	100	77.872	ENSPNAG00000015123	-	100	77.872	Pygocentrus_nattereri
ENSLOCG00000003456	rbm38	99	72.650	ENSPNAG00000010596	rbm38	100	72.650	Pygocentrus_nattereri
ENSLOCG00000003456	rbm38	95	69.912	ENSRNOG00000006420	Rbm38	92	69.912	Rattus_norvegicus
ENSLOCG00000003456	rbm38	95	58.108	ENSRROG00000036388	-	90	58.108	Rhinopithecus_roxellana
ENSLOCG00000003456	rbm38	92	71.689	ENSSBOG00000031053	RBM38	93	91.000	Saimiri_boliviensis_boliviensis
ENSLOCG00000003456	rbm38	100	70.213	ENSSFOG00015004453	rbm38	100	75.319	Scleropages_formosus
ENSLOCG00000003456	rbm38	100	75.000	ENSSDUG00000021082	RBM38	100	75.410	Seriola_dumerili
ENSLOCG00000003456	rbm38	100	66.532	ENSSDUG00000022611	rbm38	98	66.532	Seriola_dumerili
ENSLOCG00000003456	rbm38	100	66.532	ENSSLDG00000010845	rbm38	98	66.532	Seriola_lalandi_dorsalis
ENSLOCG00000003456	rbm38	100	75.820	ENSSLDG00000011778	RBM38	100	76.230	Seriola_lalandi_dorsalis
ENSLOCG00000003456	rbm38	100	64.113	ENSSPAG00000011113	rbm38	98	64.113	Stegastes_partitus
ENSLOCG00000003456	rbm38	100	74.590	ENSSPAG00000020989	RBM38	100	75.214	Stegastes_partitus
ENSLOCG00000003456	rbm38	95	72.000	ENSSSCG00000007504	RBM38	91	72.000	Sus_scrofa
ENSLOCG00000003456	rbm38	98	62.656	ENSTRUG00000024954	rbm38	97	63.900	Takifugu_rubripes
ENSLOCG00000003456	rbm38	100	75.510	ENSTRUG00000019869	-	100	75.510	Takifugu_rubripes
ENSLOCG00000003456	rbm38	94	77.477	ENSTNIG00000007093	-	100	77.477	Tetraodon_nigroviridis
ENSLOCG00000003456	rbm38	95	72.889	ENSUAMG00000019780	RBM38	91	72.889	Ursus_americanus
ENSLOCG00000003456	rbm38	95	72.444	ENSVVUG00000017246	RBM38	91	72.444	Vulpes_vulpes
ENSLOCG00000003456	rbm38	94	71.806	ENSXETG00000011268	rbm38	99	71.806	Xenopus_tropicalis
ENSLOCG00000003456	rbm38	86	65.196	ENSXCOG00000017324	-	89	65.196	Xiphophorus_couchianus
ENSLOCG00000003456	rbm38	100	58.065	ENSXMAG00000023662	rbm38	98	62.097	Xiphophorus_maculatus