EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLOCG00000003467 (Gene tree)
Gene ID: 102695918
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Plus strand
Length: 4588 bases
Position: chrLG6:5659812-5664399
Accession: 102695918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004109	MMR_HSR1	PF01926.23	5.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004117	-	1017	XM_006631386	ENSLOCP00000004109	215 (aa)	XP_006631449	W5M6V1

Gene Model

Click here to download ENSLOCG00000003467's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003467's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLOCG00000003467	si:dkey-34d22.5	76	30.909	ENSLOCG00000016464	si:cabz01085950.1	81	30.909
ENSLOCG00000003467	si:dkey-34d22.5	100	66.047	ENSLOCG00000003453	rab42a	100	66.047
ENSLOCG00000003467	si:dkey-34d22.5	100	49.074	ENSLOCG00000015825	-	99	49.074
ENSLOCG00000003467	si:dkey-34d22.5	54	30.769	ENSLOCG00000012693	arl3	55	31.818
ENSLOCG00000003467	si:dkey-34d22.5	100	31.651	ENSLOCG00000015576	zgc:100918	100	31.651
ENSLOCG00000003467	si:dkey-34d22.5	77	32.727	ENSLOCG00000010004	rheb	87	32.727
ENSLOCG00000003467	si:dkey-34d22.5	83	42.135	ENSLOCG00000016037	rab1ab	86	42.135
ENSLOCG00000003467	si:dkey-34d22.5	73	31.013	ENSLOCG00000007682	rhebl1	85	31.013
ENSLOCG00000003467	si:dkey-34d22.5	77	41.176	ENSLOCG00000018352	rab9b	83	38.462
ENSLOCG00000003467	si:dkey-34d22.5	76	41.718	ENSLOCG00000005884	rab30	80	41.463
ENSLOCG00000003467	si:dkey-34d22.5	76	36.585	ENSLOCG00000007029	rab22a	84	36.585
ENSLOCG00000003467	si:dkey-34d22.5	89	30.693	ENSLOCG00000014424	rasl11a	79	30.693
ENSLOCG00000003467	si:dkey-34d22.5	95	35.610	ENSLOCG00000013835	rab11a	93	35.610
ENSLOCG00000003467	si:dkey-34d22.5	79	33.140	ENSLOCG00000014547	RAB7A	82	33.140
ENSLOCG00000003467	si:dkey-34d22.5	76	41.916	ENSLOCG00000017414	rab9a	82	39.157
ENSLOCG00000003467	si:dkey-34d22.5	76	34.756	ENSLOCG00000012566	rab5c	76	34.756
ENSLOCG00000003467	si:dkey-34d22.5	79	38.824	ENSLOCG00000010535	rab33ba	73	38.824
ENSLOCG00000003467	si:dkey-34d22.5	77	36.310	ENSLOCG00000002825	rab36	72	35.119
ENSLOCG00000003467	si:dkey-34d22.5	77	35.329	ENSLOCG00000005802	rab34a	62	35.329
ENSLOCG00000003467	si:dkey-34d22.5	97	37.850	ENSLOCG00000015191	rab41	93	37.089
ENSLOCG00000003467	si:dkey-34d22.5	77	40.964	ENSLOCG00000007491	rab18a	80	39.157
ENSLOCG00000003467	si:dkey-34d22.5	99	35.514	ENSLOCG00000008865	rab11al	96	35.514
ENSLOCG00000003467	si:dkey-34d22.5	100	55.093	ENSLOCG00000006748	-	100	55.093
ENSLOCG00000003467	si:dkey-34d22.5	98	39.437	ENSLOCG00000005509	rab14	97	39.437
ENSLOCG00000003467	si:dkey-34d22.5	76	38.922	ENSLOCG00000015358	rab33a	69	38.922
ENSLOCG00000003467	si:dkey-34d22.5	76	38.323	ENSLOCG00000005904	zgc:101559	71	38.323
ENSLOCG00000003467	si:dkey-34d22.5	76	35.976	ENSLOCG00000006591	rab5ab	75	35.976
ENSLOCG00000003467	si:dkey-34d22.5	81	38.506	ENSLOCG00000001637	rab35b	83	38.506
ENSLOCG00000003467	si:dkey-34d22.5	95	37.561	ENSLOCG00000014692	zgc:171927	87	38.579
ENSLOCG00000003467	si:dkey-34d22.5	70	33.553	ENSLOCG00000001886	mras	91	30.570
ENSLOCG00000003467	si:dkey-34d22.5	79	31.214	ENSLOCG00000016679	dnajc27	64	30.857
ENSLOCG00000003467	si:dkey-34d22.5	75	36.364	ENSLOCG00000014749	si:dkey-13a21.4	83	34.302
ENSLOCG00000003467	si:dkey-34d22.5	73	40.127	ENSLOCG00000008881	rab25a	90	40.127
ENSLOCG00000003467	si:dkey-34d22.5	100	52.778	ENSLOCG00000014927	rab39bb	98	52.778
ENSLOCG00000003467	si:dkey-34d22.5	79	39.412	ENSLOCG00000002680	rab12	80	37.799
ENSLOCG00000003467	si:dkey-34d22.5	89	40.625	ENSLOCG00000005108	rab2a	90	40.625
ENSLOCG00000003467	si:dkey-34d22.5	100	34.842	ENSLOCG00000012406	rab15	100	34.842
ENSLOCG00000003467	si:dkey-34d22.5	73	34.615	ENSLOCG00000016999	rab23	72	32.955
ENSLOCG00000003467	si:dkey-34d22.5	73	31.210	ENSLOCG00000016767	rabl2	67	30.573
ENSLOCG00000003467	si:dkey-34d22.5	77	41.176	ENSLOCG00000017482	rab9b	83	38.462
ENSLOCG00000003467	si:dkey-34d22.5	75	31.138	ENSLOCG00000014119	rasl11b	69	31.138

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003467	si:dkey-34d22.5	99	72.018	ENSACIG00000016958	si:dkey-34d22.5	98	69.266	Amphilophus_citrinellus
ENSLOCG00000003467	si:dkey-34d22.5	98	70.968	ENSATEG00000010784	si:dkey-34d22.5	84	70.968	Anabas_testudineus
ENSLOCG00000003467	si:dkey-34d22.5	100	63.721	ENSCPBG00000011236	-	100	63.721	Chrysemys_picta_bellii
ENSLOCG00000003467	si:dkey-34d22.5	98	64.977	ENSCSEG00000019183	si:dkey-34d22.5	98	64.977	Cynoglossus_semilaevis
ENSLOCG00000003467	si:dkey-34d22.5	98	70.507	ENSCVAG00000017064	si:dkey-34d22.5	98	70.507	Cyprinodon_variegatus
ENSLOCG00000003467	si:dkey-34d22.5	85	48.087	ENSDARG00000100379	si:dkey-34d22.2	99	48.087	Danio_rerio
ENSLOCG00000003467	si:dkey-34d22.5	100	63.889	ENSFALG00000001373	-	100	63.889	Ficedula_albicollis
ENSLOCG00000003467	si:dkey-34d22.5	98	70.642	ENSFHEG00000012041	si:dkey-34d22.5	98	70.642	Fundulus_heteroclitus
ENSLOCG00000003467	si:dkey-34d22.5	100	64.651	ENSGALG00000000994	-	100	64.651	Gallus_gallus
ENSLOCG00000003467	si:dkey-34d22.5	98	70.046	ENSGAFG00000008183	si:dkey-34d22.5	98	67.281	Gambusia_affinis
ENSLOCG00000003467	si:dkey-34d22.5	94	63.054	ENSGAGG00000004918	-	100	63.054	Gopherus_agassizii
ENSLOCG00000003467	si:dkey-34d22.5	98	68.075	ENSHCOG00000015692	si:dkey-34d22.5	98	68.075	Hippocampus_comes
ENSLOCG00000003467	si:dkey-34d22.5	98	71.429	ENSKMAG00000012778	si:dkey-34d22.5	98	69.585	Kryptolebias_marmoratus
ENSLOCG00000003467	si:dkey-34d22.5	98	69.585	ENSLBEG00000002926	si:dkey-34d22.5	98	69.585	Labrus_bergylta
ENSLOCG00000003467	si:dkey-34d22.5	100	58.986	ENSLACG00000012674	si:dkey-34d22.5	100	58.986	Latimeria_chalumnae
ENSLOCG00000003467	si:dkey-34d22.5	99	69.302	ENSMMOG00000006846	si:dkey-34d22.5	98	69.302	Mola_mola
ENSLOCG00000003467	si:dkey-34d22.5	98	70.507	ENSMALG00000013152	si:dkey-34d22.5	98	70.507	Monopterus_albus
ENSLOCG00000003467	si:dkey-34d22.5	98	71.628	ENSORLG00000014099	si:dkey-34d22.5	98	68.837	Oryzias_latipes
ENSLOCG00000003467	si:dkey-34d22.5	98	71.163	ENSORLG00020020277	si:dkey-34d22.5	98	68.372	Oryzias_latipes_hni
ENSLOCG00000003467	si:dkey-34d22.5	98	71.163	ENSORLG00015000142	si:dkey-34d22.5	98	68.837	Oryzias_latipes_hsok
ENSLOCG00000003467	si:dkey-34d22.5	92	75.879	ENSOMEG00000017958	si:dkey-34d22.5	98	70.833	Oryzias_melastigma
ENSLOCG00000003467	si:dkey-34d22.5	99	71.759	ENSPKIG00000021209	si:dkey-34d22.5	99	71.759	Paramormyrops_kingsleyae
ENSLOCG00000003467	si:dkey-34d22.5	96	66.019	ENSPSIG00000006606	-	99	66.019	Pelodiscus_sinensis
ENSLOCG00000003467	si:dkey-34d22.5	99	71.101	ENSPMGG00000001298	-	99	71.101	Periophthalmus_magnuspinnatus
ENSLOCG00000003467	si:dkey-34d22.5	100	60.000	ENSPCIG00000022399	-	97	60.000	Phascolarctos_cinereus
ENSLOCG00000003467	si:dkey-34d22.5	98	70.507	ENSPFOG00000014499	si:dkey-34d22.5	98	67.281	Poecilia_formosa
ENSLOCG00000003467	si:dkey-34d22.5	98	70.507	ENSPLAG00000007773	si:dkey-34d22.5	98	67.281	Poecilia_latipinna
ENSLOCG00000003467	si:dkey-34d22.5	98	70.507	ENSPMEG00000012932	si:dkey-34d22.5	98	67.281	Poecilia_mexicana
ENSLOCG00000003467	si:dkey-34d22.5	100	60.465	ENSSHAG00000008520	-	97	60.465	Sarcophilus_harrisii
ENSLOCG00000003467	si:dkey-34d22.5	99	71.163	ENSSFOG00015012088	rab42	96	68.372	Scleropages_formosus
ENSLOCG00000003467	si:dkey-34d22.5	98	71.889	ENSSLDG00000002646	si:dkey-34d22.5	98	71.889	Seriola_lalandi_dorsalis
ENSLOCG00000003467	si:dkey-34d22.5	98	71.889	ENSSPAG00000012955	si:dkey-34d22.5	98	69.124	Stegastes_partitus
ENSLOCG00000003467	si:dkey-34d22.5	82	55.932	ENSXETG00000020622	rab39a	86	55.932	Xenopus_tropicalis
ENSLOCG00000003467	si:dkey-34d22.5	98	69.124	ENSXCOG00000008410	si:dkey-34d22.5	98	66.359	Xiphophorus_couchianus
ENSLOCG00000003467	si:dkey-34d22.5	98	69.124	ENSXMAG00000029317	si:dkey-34d22.5	98	66.359	Xiphophorus_maculatus