EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLOCG00000003546 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: uncharacterized LOC102691565
Gene Type: protein_coding
Species: Lepisosteus_oculatus
Status: putative
Strand: Minus strand
Length: 27941 bases
Position: chrLG18:7321196-7349136
Accession: 102691565
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLOCP00000004203	AXH	PF08517.12	2.5e-38	1	1
ENSLOCP00000004192	AXH	PF08517.12	3.8e-38	1	1
ENSLOCP00000004224	AXH	PF08517.12	9e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLOCT00000004211	-	1755	-	ENSLOCP00000004203	258 (aa)	-	W5M745
ENSLOCT00000004232	-	1731	XM_006639556	ENSLOCP00000004224	577 (aa)	XP_006639619	W5M766
ENSLOCT00000004200	-	3232	XM_015364917	ENSLOCP00000004192	273 (aa)	XP_015220403	W5M734

Gene Model

Click here to download ENSLOCG00000003546's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLOCG00000003546's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLOCG00000003546	-	94	51.282	ENSAPOG00000010154	-	86	51.515	Acanthochromis_polyacanthus
ENSLOCG00000003546	-	95	49.576	ENSAOCG00000006788	-	86	50.000	Amphiprion_ocellaris
ENSLOCG00000003546	-	95	49.576	ENSAPEG00000013961	-	86	50.000	Amphiprion_percula
ENSLOCG00000003546	-	82	70.635	ENSATEG00000015767	-	84	48.523	Anabas_testudineus
ENSLOCG00000003546	-	89	50.000	ENSAMXG00000002724	-	99	38.288	Astyanax_mexicanus
ENSLOCG00000003546	-	87	48.684	ENSCSEG00000020655	-	75	50.455	Cynoglossus_semilaevis
ENSLOCG00000003546	-	93	48.954	ENSCVAG00000012483	-	88	49.372	Cyprinodon_variegatus
ENSLOCG00000003546	-	85	49.123	ENSFHEG00000003223	-	73	50.685	Fundulus_heteroclitus
ENSLOCG00000003546	-	90	45.417	ENSGMOG00000002722	-	90	45.382	Gadus_morhua
ENSLOCG00000003546	-	89	51.037	ENSGAFG00000013774	-	76	52.381	Gambusia_affinis
ENSLOCG00000003546	-	94	46.800	ENSGACG00000015121	-	100	46.324	Gasterosteus_aculeatus
ENSLOCG00000003546	-	80	68.966	ENSHBUG00000007567	-	85	47.807	Haplochromis_burtoni
ENSLOCG00000003546	-	95	47.664	ENSHCOG00000000585	-	99	34.135	Hippocampus_comes
ENSLOCG00000003546	-	89	46.241	ENSIPUG00000014628	-	80	38.390	Ictalurus_punctatus
ENSLOCG00000003546	-	94	48.485	ENSKMAG00000013261	-	86	47.679	Kryptolebias_marmoratus
ENSLOCG00000003546	-	99	45.833	ENSLBEG00000007715	-	83	46.774	Labrus_bergylta
ENSLOCG00000003546	-	92	49.074	ENSMAMG00000024117	-	86	48.945	Mastacembelus_armatus
ENSLOCG00000003546	-	80	68.966	ENSMZEG00005025990	-	85	47.807	Maylandia_zebra
ENSLOCG00000003546	-	94	51.082	ENSMALG00000022211	-	85	50.216	Monopterus_albus
ENSLOCG00000003546	-	99	32.851	ENSORLG00000025783	-	99	33.430	Oryzias_latipes
ENSLOCG00000003546	-	99	32.855	ENSORLG00020018594	-	99	33.429	Oryzias_latipes_hni
ENSLOCG00000003546	-	100	42.164	ENSORLG00015013642	-	99	33.675	Oryzias_latipes_hsok
ENSLOCG00000003546	-	71	68.293	ENSOMEG00000007446	-	84	46.637	Oryzias_melastigma
ENSLOCG00000003546	-	98	32.000	ENSPKIG00000018378	-	99	31.643	Paramormyrops_kingsleyae
ENSLOCG00000003546	-	88	38.036	ENSPKIG00000025441	-	99	36.239	Paramormyrops_kingsleyae
ENSLOCG00000003546	-	89	51.452	ENSPFOG00000009556	-	76	52.381	Poecilia_formosa
ENSLOCG00000003546	-	50	56.923	ENSPFOG00000023374	-	63	57.692	Poecilia_formosa
ENSLOCG00000003546	-	89	51.452	ENSPMEG00000023122	-	76	52.381	Poecilia_mexicana
ENSLOCG00000003546	-	89	51.667	ENSPREG00000007919	-	76	52.155	Poecilia_reticulata
ENSLOCG00000003546	-	94	48.163	ENSPNAG00000001615	-	98	38.010	Pygocentrus_nattereri
ENSLOCG00000003546	-	96	47.170	ENSSFOG00015020613	-	99	38.295	Scleropages_formosus
ENSLOCG00000003546	-	82	69.841	ENSSDUG00000022785	-	80	69.841	Seriola_dumerili
ENSLOCG00000003546	-	82	69.841	ENSSLDG00000012498	-	86	48.261	Seriola_lalandi_dorsalis
ENSLOCG00000003546	-	94	50.215	ENSSPAG00000018983	-	85	51.073	Stegastes_partitus
ENSLOCG00000003546	-	89	49.583	ENSXMAG00000028965	-	76	50.215	Xiphophorus_maculatus